View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10317_low_61 (Length: 207)
Name: NF10317_low_61
Description: NF10317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10317_low_61 |
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Alignment Details
Target: chr5 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 18 - 197
Target Start/End: Original strand, 42335021 - 42335204
Alignment:
| Q |
18 |
attataatacggaaaatatgataattaaaagcaacgatttataaaacaaccattaagtttgaacatttcatcttcttctacaaacattaattcaacaaat |
117 |
Q |
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| T |
42335021 |
attataatacggaaa-tatgataattaaaagcaacgatttataaaacaaccattaagtttgaacatttcatcttcttctacaaacattaattcaacaaat |
42335119 |
T |
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| Q |
118 |
c-----tctagaagaacaagatgacaataatcccactcaaagctaaacctcctagccacttggagctcttcgtggtctctgctcc |
197 |
Q |
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| T |
42335120 |
ctcatatctagaagaacaagatgacaataatcccactcaaagctaaacctcctagccacttggagctcttcgtggtgtctgctcc |
42335204 |
T |
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