View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10317_low_8 (Length: 454)

Name: NF10317_low_8
Description: NF10317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10317_low_8
NF10317_low_8
[»] chr5 (1 HSPs)
chr5 (16-153)||(3533054-3533193)
[»] chr3 (1 HSPs)
chr3 (339-375)||(45150303-45150339)
[»] scaffold0662 (1 HSPs)
scaffold0662 (338-375)||(1075-1112)
[»] chr4 (2 HSPs)
chr4 (338-375)||(47014936-47014973)
chr4 (339-375)||(35017151-35017187)
[»] chr8 (1 HSPs)
chr8 (339-375)||(41935273-41935309)
[»] chr7 (1 HSPs)
chr7 (339-375)||(45555972-45556008)
[»] chr1 (1 HSPs)
chr1 (338-374)||(46902610-46902646)


Alignment Details
Target: chr5 (Bit Score: 129; Significance: 1e-66; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 16 - 153
Target Start/End: Original strand, 3533054 - 3533193
Alignment:
Q  16 aaaagcttatttggtgcaaacaacaaagtagacacgaaggtcgttgtcacttttggtgccaatgcaaagtataattggcagca--tagacaacacacaca 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||    
T  3533054 aaaagcttatttggtgcaaacaacaaagtagacacgaaggtcgttgtcacttttggtgccaatgcaaagtataattggcagcaagtagacaacacacaca 3533153  T
Q  114 tgagagttcatcgcaacccataagcaaagcaacactcgct 153  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  3533154 tgagagttcatcgcaacccataagcaaagcaacactcgct 3533193  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 339 - 375
Target Start/End: Complemental strand, 45150339 - 45150303
Alignment:
Q  339 tagagaaatgatacttctacaactattttgtgacaac 375  Q
    |||||||||||||||| ||||||||||||||||||||    
T  45150339 tagagaaatgatacttatacaactattttgtgacaac 45150303  T

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Target: scaffold0662 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0662
Description:

Target: scaffold0662; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 338 - 375
Target Start/End: Original strand, 1075 - 1112
Alignment:
Q  338 ttagagaaatgatacttctacaactattttgtgacaac 375  Q
    |||||||||||||| || ||||||||||||||||||||    
T  1075 ttagagaaatgatatttgtacaactattttgtgacaac 1112  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 338 - 375
Target Start/End: Original strand, 47014936 - 47014973
Alignment:
Q  338 ttagagaaatgatacttctacaactattttgtgacaac 375  Q
    |||||||||||||| || ||||||||||||||||||||    
T  47014936 ttagagaaatgatatttgtacaactattttgtgacaac 47014973  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 339 - 375
Target Start/End: Original strand, 35017151 - 35017187
Alignment:
Q  339 tagagaaatgatacttctacaactattttgtgacaac 375  Q
    ||||||||||||| || ||||||||||||||||||||    
T  35017151 tagagaaatgatatttgtacaactattttgtgacaac 35017187  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 339 - 375
Target Start/End: Complemental strand, 41935309 - 41935273
Alignment:
Q  339 tagagaaatgatacttctacaactattttgtgacaac 375  Q
    |||||||||||||||| |||||||||||||| |||||    
T  41935309 tagagaaatgatacttgtacaactattttgtaacaac 41935273  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 339 - 375
Target Start/End: Original strand, 45555972 - 45556008
Alignment:
Q  339 tagagaaatgatacttctacaactattttgtgacaac 375  Q
    |||||||||||||| | ||||||||||||||||||||    
T  45555972 tagagaaatgatacatgtacaactattttgtgacaac 45556008  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 338 - 374
Target Start/End: Original strand, 46902610 - 46902646
Alignment:
Q  338 ttagagaaatgatacttctacaactattttgtgacaa 374  Q
    ||||||||||||||||| || ||||||||||||||||    
T  46902610 ttagagaaatgatacttgtataactattttgtgacaa 46902646  T

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