View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10317_low_9 (Length: 447)
Name: NF10317_low_9
Description: NF10317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10317_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 376; Significance: 0; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 19 - 431
Target Start/End: Complemental strand, 8674616 - 8674204
Alignment:
| Q |
19 |
gaggactctaagaaaagtgagaggaaaatgactagtgatgtgagaatgaatttttgtgccattttgtgttacaattgaaccttggttggttaatgtgata |
118 |
Q |
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| T |
8674616 |
gaggactctaagaaaagtgagaggaaaatgactagtgatgtgagaatgaatttttgtgccattttgtgttacaattgaaccttggttggttaatgtgata |
8674517 |
T |
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| Q |
119 |
tgatggaagaagagagcttctcaatgctcaagttggatgaaaatgctaatggggggtgttacttaaatagaaaattcctcacatgttcccacatgaannn |
218 |
Q |
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| T |
8674516 |
tgatggaagaagagagcttttcaatgctcaagtttgatgaaaatgctaatggggtgtgttacttaaatagaaaattcctcacatgttcccacatgaaatt |
8674417 |
T |
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| Q |
219 |
nnnnggtcaaaaccgcacatgcattaaacataaatctattttctttctttgcccatgttgcctttattcaagtgcattatgcgtgaaatgagttgcacta |
318 |
Q |
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| T |
8674416 |
ttttggtcaaaaccgcacatgcattaaacataaatctattttgtttctttgcccatgttgcctttattcaagtgcattatgcgtgaaatgagttgcacta |
8674317 |
T |
|
| Q |
319 |
agcatgaagtgaaagaatataagcacgcattgtagctggtcggttaattaagcacgcattatattaacatattatgtgtagattataatagagattaagt |
418 |
Q |
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| T |
8674316 |
agcatgaagtgaaagaatataagcacgcattgtagctggtcggttaattaagcacgcattatattaacatattatgtgtagattataatagagattaagt |
8674217 |
T |
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| Q |
419 |
aaatccatagaaa |
431 |
Q |
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| T |
8674216 |
aaatccatagaaa |
8674204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 22 - 141
Target Start/End: Original strand, 8687853 - 8687972
Alignment:
| Q |
22 |
gactctaagaaaagtgagaggaaaatgactagtgatgtgagaatgaatttttgtgccattttgtgttacaattgaaccttggttggttaatgtgatatga |
121 |
Q |
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| T |
8687853 |
gactctatgaagagtgagaggaaaatgattagtgatgtgagaatgaatttttgttccattttgtgttacaattgaaccttggttagttaatatgatatga |
8687952 |
T |
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| Q |
122 |
tggaagaagagagcttctca |
141 |
Q |
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| T |
8687953 |
tggaagaggagagtttctca |
8687972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 263 - 427
Target Start/End: Original strand, 8688075 - 8688255
Alignment:
| Q |
263 |
ttctttgcccatgttgcctttattcaagtgcattatgcgtgaaatgagttgcactaagcatgaagtgaaag------------aatataagcacgcattg |
350 |
Q |
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| T |
8688075 |
ttcttggcccatgttacctttattcaagtgcattatgcgtgcaatgagttgcaccaagcatgaagtgaaatccatattataacaaactaagcacgcatta |
8688174 |
T |
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| Q |
351 |
tagctggtcggttaattaagcacgcattatattaacata----ttatgtgtagattataatagagattaagtaaatccata |
427 |
Q |
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| T |
8688175 |
tagctggtcggttaattaagaacgcattatattaccataatattgatgtgtagattataatagagattaagtaaatccata |
8688255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 34 - 102
Target Start/End: Complemental strand, 8692832 - 8692764
Alignment:
| Q |
34 |
agtgagaggaaaatgactagtgatgtgagaatgaatttttgtgccattttgtgttacaattgaaccttg |
102 |
Q |
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| T |
8692832 |
agtgagaggaaaatgactagtgatgttagaatgagttttggtgccattttgggtttcaattgaaccttg |
8692764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 110 - 213
Target Start/End: Complemental strand, 8678539 - 8678437
Alignment:
| Q |
110 |
aatgtgatatgatggaagaagagagcttctcaatgctcaagttggatgaaaatgctaatggggggtgttacttaaatagaaaattcctcacatgttccca |
209 |
Q |
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|||||||||||||||||||||||| ||| ||| |||||| || ||||||||||||||||||| |||| |||| ||||| | ||||| |||| |||||| |
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| T |
8678539 |
aatgtgatatgatggaagaagagaatttc-caaagctcaaatttgatgaaaatgctaatggggtttgttgcttatatagagatttcctaacatattccca |
8678441 |
T |
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| Q |
210 |
catg |
213 |
Q |
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|||| |
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| T |
8678440 |
catg |
8678437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 398 - 431
Target Start/End: Original strand, 8688260 - 8688293
Alignment:
| Q |
398 |
agattataatagagattaagtaaatccatagaaa |
431 |
Q |
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| T |
8688260 |
agattataatagagattaagtaaatccatagaaa |
8688293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 110 - 189
Target Start/End: Original strand, 8696503 - 8696581
Alignment:
| Q |
110 |
aatgtgatatgatggaagaagagagcttctcaatgctcaagttggatgaaaatgctaatggggggtgttacttaaataga |
189 |
Q |
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|||||||||||||| ||||||||| ||| ||| |||||| || |||||||||||||||||| ||||||||| ||||| |
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| T |
8696503 |
aatgtgatatgatgaaagaagagaatttc-caaagctcaaatttgatgaaaatgctaatgggttttgttacttatataga |
8696581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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