View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10318_high_1 (Length: 732)

Name: NF10318_high_1
Description: NF10318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10318_high_1
NF10318_high_1
[»] chr1 (6 HSPs)
chr1 (20-341)||(26071805-26072120)
chr1 (20-341)||(26090866-26091181)
chr1 (494-720)||(10040053-10040279)
chr1 (221-344)||(26103840-26103963)
chr1 (20-93)||(26104130-26104203)
chr1 (369-425)||(10040348-10040405)
[»] chr2 (2 HSPs)
chr2 (521-725)||(562319-562523)
chr2 (369-425)||(562181-562237)
[»] chr5 (4 HSPs)
chr5 (494-725)||(11893859-11894090)
chr5 (494-641)||(28086057-28086204)
chr5 (369-425)||(28086273-28086329)
chr5 (369-425)||(11893737-11893793)
[»] chr6 (5 HSPs)
chr6 (494-725)||(33846270-33846495)
chr6 (494-725)||(33846883-33847108)
chr6 (340-425)||(33846116-33846201)
chr6 (340-425)||(33847177-33847262)
chr6 (378-424)||(15339446-15339492)
[»] chr7 (2 HSPs)
chr7 (339-420)||(12543380-12543461)
chr7 (380-424)||(7744523-7744567)
[»] chr8 (2 HSPs)
chr8 (342-424)||(24917424-24917506)
chr8 (379-424)||(1080887-1080932)
[»] chr3 (1 HSPs)
chr3 (358-424)||(53281562-53281629)


Alignment Details
Target: chr1 (Bit Score: 254; Significance: 1e-141; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 20 - 341
Target Start/End: Complemental strand, 26072120 - 26071805
Alignment:
Q  20 aagataacaataacatagcagttgtggcacagctctacagattgggtgttcctgatcctctaatctccaaggtacgtagaattaaaatcacattcactat 119  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    || |||||||||||||||||||    
T  26072120 aagataacaataacatagcagttgtggcacagctctatagattgggtgttcctgatcctctaatctccaaggta----gagttaaaatcacattcactat 26072025  T
Q  120 tattatgtgactcatataatataaagtatgtagtgtttattatttggaatgttaatagcacatatatataacataagtagatagtagtatagcttccaat 219  Q
    ||||||||||||||||||||||||||||| ||| |||||| ||||||||||||||||||||||| |||  ||||||||||||||||||||||||||||||    
T  26072024 tattatgtgactcatataatataaagtatatagggtttatcatttggaatgttaatagcacataaata--acataagtagatagtagtatagcttccaat 26071927  T
Q  220 tacatgtggttcttggatgcagattgaagacaagttctataagctagccaatgagaatcatgcaggcaataaagatgctaacattgctcttggcaccttt 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  26071926 tacatgtggttcttggatgcagattgaagacaagttctataagctagtcaatgagaaccatgcaggcaataaaaatgctaacattgctcttggcaccttt 26071827  T
Q  320 gatgtaaaggaattaaataaaa 341  Q
    |||||||| |||||||||||||    
T  26071826 gatgtaaatgaattaaataaaa 26071805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 20 - 341
Target Start/End: Complemental strand, 26091181 - 26090866
Alignment:
Q  20 aagataacaataacatagcagttgtggcacagctctacagattgggtgttcctgatcctctaatctccaaggtacgtagaattaaaatcacattcactat 119  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    || |||||||||||||||||||    
T  26091181 aagataacaataacatagcagttgtggcacagctctatagattgggtgttcctgatcctctaatctccaaggta----gagttaaaatcacattcactat 26091086  T
Q  120 tattatgtgactcatataatataaagtatgtagtgtttattatttggaatgttaatagcacatatatataacataagtagatagtagtatagcttccaat 219  Q
    ||||||||||||||||||||||||||||| ||| |||||| ||||||||||||||||||||||| |||  ||||||||||||||||||||||||||||||    
T  26091085 tattatgtgactcatataatataaagtatatagggtttatcatttggaatgttaatagcacataaata--acataagtagatagtagtatagcttccaat 26090988  T
Q  220 tacatgtggttcttggatgcagattgaagacaagttctataagctagccaatgagaatcatgcaggcaataaagatgctaacattgctcttggcaccttt 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  26090987 tacatgtggttcttggatgcagattgaagacaagttctataagctagtcaatgagaaccatgcaggcaataaaaatgctaacattgctcttggcaccttt 26090888  T
Q  320 gatgtaaaggaattaaataaaa 341  Q
    |||||||| |||||||||||||    
T  26090887 gatgtaaatgaattaaataaaa 26090866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 146; E-Value: 2e-76
Query Start/End: Original strand, 494 - 720
Target Start/End: Complemental strand, 10040279 - 10040053
Alignment:
Q  494 aactcaccagcctccaccactccccggccaccaccgccgcacccttttgttccatacccccaaatacatcctcgtgtggcctttcannnnnnnnnnnnnn 593  Q
    |||||||| ||||||||||||| |||||||||  ||||||||||||||||||||||| ||||||||||||||||||||||||||||                  
T  10040279 aactcaccggcctccaccactcaccggccaccgtcgccgcacccttttgttccatactcccaaatacatcctcgtgtggcctttcatcttctctcttctc 10040180  T
Q  594 nnnnngcaacatagacccactgactgcacatccatgctccttcaccactaccactgttgctcccgtcgcacctgcgccccatcctccttcatcttgtttc 693  Q
         |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  10040179 tctttgcaacatagacccactgactgcacatccatgctccttcaccactaccattgttgctcccgtcgcacctgcgccccatcctccttcatcttgtttc 10040080  T
Q  694 ccatctccgacgacacaaacctcttct 720  Q
    |||||||||||||||||||||||||||    
T  10040079 ccatctccgacgacacaaacctcttct 10040053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 221 - 344
Target Start/End: Complemental strand, 26103963 - 26103840
Alignment:
Q  221 acatgtggttcttggatgcagattgaagacaagttctataagctagccaatgagaatcatgcaggcaataaagatgctaacattgctcttggcacctttg 320  Q
    |||| ||||||||| |||||||||||||||||||||||| |||||||||||||||| | ||  || ||||||||||| || ||||| |||||||||||||    
T  26103963 acatttggttcttgaatgcagattgaagacaagttctatgagctagccaatgagaaccgtgtgggaaataaagatgccaaaattgcccttggcacctttg 26103864  T
Q  321 atgtaaaggaattaaataaaagga 344  Q
    ||||| ||||| ||||||||||||    
T  26103863 atgtagaggaaataaataaaagga 26103840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 20 - 93
Target Start/End: Complemental strand, 26104203 - 26104130
Alignment:
Q  20 aagataacaataacatagcagttgtggcacagctctacagattgggtgttcctgatcctctaatctccaaggta 93  Q
    ||||||||||||||||||||||| | |||   |||||||  ||||||| |||||||||||||||||||||||||    
T  26104203 aagataacaataacatagcagttattgcagccctctacaatttgggtgatcctgatcctctaatctccaaggta 26104130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 369 - 425
Target Start/End: Complemental strand, 10040405 - 10040348
Alignment:
Q  369 tgtacaccttcatatacacctc-ttatgtggcatgggtattttagaaatttcacacaa 425  Q
    |||||||||||||||||||| | |||| || |||| ||||||||||||||||||||||    
T  10040405 tgtacaccttcatatacacccccttatatgacatgagtattttagaaatttcacacaa 10040348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 136; Significance: 1e-70; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 521 - 725
Target Start/End: Original strand, 562319 - 562523
Alignment:
Q  521 ccaccaccgccgcacccttttgttccatacccccaaatacatcctcgtgtggcctttcannnnnnnnnnnnnnnnnnngcaacatagacccactgactgc 620  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                   |||||||||| |||||||||||    
T  562319 ccaccaccgccgcacccttttgttccatacccccaaatacatcctcgtgtggcctttcatcttctctcttctctctctgcaacatagatccactgactgc 562418  T
Q  621 acatccatgctccttcaccactaccactgttgctcccgtcgcacctgcgccccatcctccttcatcttgtttcccatctccgacgacacaaacctcttct 720  Q
    |||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  562419 acatccatgctccttcaccactaccattgctgctcccgtcgcacctgcgccccatcctccttcatcttgtttcccatctccgacgacacaaacctcttct 562518  T
Q  721 tctct 725  Q
    |||||    
T  562519 tctct 562523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 369 - 425
Target Start/End: Original strand, 562181 - 562237
Alignment:
Q  369 tgtacaccttcatatacacctcttatgtggcatgggtattttagaaatttcacacaa 425  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  562181 tgtacaccttcatatacaccccttatgtggcatgggtattttagaaatttcacacaa 562237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 135; Significance: 6e-70; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 135; E-Value: 6e-70
Query Start/End: Original strand, 494 - 725
Target Start/End: Original strand, 11893859 - 11894090
Alignment:
Q  494 aactcaccagcctccaccactccccggccaccaccgccgcacccttttgttccatacccccaaatacatcctcgtgtggcctttcannnnnnnnnnnnnn 593  Q
    |||||| | ||||||||||| | ||||||||||||||| ||||||||||||||||||||||||||||| ||| |||||||||||||                  
T  11893859 aactcatcggcctccaccacccaccggccaccaccgccacacccttttgttccatacccccaaatacacccttgtgtggcctttcatcttctgtcttctc 11893958  T
Q  594 nnnnngcaacatagacccactgactgcacatccatgctccttcaccactaccactgttgctcccgtcgcacctgcgccccatcctccttcatcttgtttc 693  Q
         |||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  11893959 tctctgcaacacagacccactgattgcacatccatgctccttcaccactaccactgttgctcccgtcgcacctgcgccccatcctccttcgtcttgtttc 11894058  T
Q  694 ccatctccgacgacacaaacctcttcttctct 725  Q
    ||||||||||||||||||||||||||||||||    
T  11894059 ccatctccgacgacacaaacctcttcttctct 11894090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 494 - 641
Target Start/End: Complemental strand, 28086204 - 28086057
Alignment:
Q  494 aactcaccagcctccaccactccccggccaccaccgccgcacccttttgttccatacccccaaatacatcctcgtgtggcctttcannnnnnnnnnnnnn 593  Q
    |||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||                  
T  28086204 aactcaccggcctccaccactcaccggccaccaccgccgcacccttttgttccatacccccaagtacatcctcgtgtggcctttcatcttctctcttctc 28086105  T
Q  594 nnnnngcaacatagacccactgactgcacatccatgctccttcaccac 641  Q
         |||||||||||||||||||||||||||||||||||||||||||    
T  28086104 tctctgcaacatagacccactgactgcacatccatgctccttcaccac 28086057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 369 - 425
Target Start/End: Complemental strand, 28086329 - 28086273
Alignment:
Q  369 tgtacaccttcatatacacctcttatgtggcatgggtattttagaaatttcacacaa 425  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  28086329 tgtacaccttcatatacaccccttatgtggcatgggtattttagaaatttcacacaa 28086273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 369 - 425
Target Start/End: Original strand, 11893737 - 11893793
Alignment:
Q  369 tgtacaccttcatatacacctcttatgtggcatgggtattttagaaatttcacacaa 425  Q
    |||||||| ||||||||||| ||||||||||||||||||||| ||||||||||||||    
T  11893737 tgtacaccctcatatacaccccttatgtggcatgggtattttggaaatttcacacaa 11893793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 128; Significance: 9e-66; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 128; E-Value: 9e-66
Query Start/End: Original strand, 494 - 725
Target Start/End: Original strand, 33846270 - 33846495
Alignment:
Q  494 aactcaccagcctccaccactccccggccaccaccgccgcacccttttgttccatacccccaaatacatcctcgtgtggcctttcannnnnnnnnnnnnn 593  Q
    |||||||| ||||||||||||| | |||||||      ||||||||||||||||||| ||||||||||||||||||||||||||||                  
T  33846270 aactcaccggcctccaccactcactggccacc------gcacccttttgttccatactcccaaatacatcctcgtgtggcctttcatcttctctcttctc 33846363  T
Q  594 nnnnngcaacatagacccactgactgcacatccatgctccttcaccactaccactgttgctcccgtcgcacctgcgccccatcctccttcatcttgtttc 693  Q
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33846364 tctctacaacatagacccactgactgcacatccatgctccttcaccactaccactgttgctcccgtcgcacctgcgccccatcctccttcatcttgtttc 33846463  T
Q  694 ccatctccgacgacacaaacctcttcttctct 725  Q
    ||||||||||| ||||||||||||||||||||    
T  33846464 ccatctccgacaacacaaacctcttcttctct 33846495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 128; E-Value: 9e-66
Query Start/End: Original strand, 494 - 725
Target Start/End: Complemental strand, 33847108 - 33846883
Alignment:
Q  494 aactcaccagcctccaccactccccggccaccaccgccgcacccttttgttccatacccccaaatacatcctcgtgtggcctttcannnnnnnnnnnnnn 593  Q
    |||||||| ||||||||||||| | |||||||      ||||||||||||||||||| ||||||||||||||||||||||||||||                  
T  33847108 aactcaccggcctccaccactcactggccacc------gcacccttttgttccatactcccaaatacatcctcgtgtggcctttcatcttctctcttctc 33847015  T
Q  594 nnnnngcaacatagacccactgactgcacatccatgctccttcaccactaccactgttgctcccgtcgcacctgcgccccatcctccttcatcttgtttc 693  Q
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33847014 tctctacaacatagacccactgactgcacatccatgctccttcaccactaccactgttgctcccgtcgcacctgcgccccatcctccttcatcttgtttc 33846915  T
Q  694 ccatctccgacgacacaaacctcttcttctct 725  Q
    ||||||||||| ||||||||||||||||||||    
T  33846914 ccatctccgacaacacaaacctcttcttctct 33846883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 340 - 425
Target Start/End: Original strand, 33846116 - 33846201
Alignment:
Q  340 aaggaaaatgattcatgtacaccctttcttgtacaccttcatatacacctcttatgtggcatgggtattttagaaatttcacacaa 425  Q
    |||| |||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33846116 aagggaaatgattcatgcacaccctttcatgtacaccttcatatacacctcttatgtggcatgggtattttagaaatttcacacaa 33846201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 340 - 425
Target Start/End: Complemental strand, 33847262 - 33847177
Alignment:
Q  340 aaggaaaatgattcatgtacaccctttcttgtacaccttcatatacacctcttatgtggcatgggtattttagaaatttcacacaa 425  Q
    |||| |||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33847262 aagggaaatgattcatgcacaccctttcatgtacaccttcatatacacctcttatgtggcatgggtattttagaaatttcacacaa 33847177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 378 - 424
Target Start/End: Original strand, 15339446 - 15339492
Alignment:
Q  378 tcatatacacctcttatgtggcatgggtattttagaaatttcacaca 424  Q
    |||||||||||  |||||||||||||||||||| |||||||||||||    
T  15339446 tcatatacacccgttatgtggcatgggtattttggaaatttcacaca 15339492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 1e-21; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 339 - 420
Target Start/End: Complemental strand, 12543461 - 12543380
Alignment:
Q  339 aaaggaaaatgattcatgtacaccctttcttgtacaccttcatatacacctcttatgtggcatgggtattttagaaatttca 420  Q
    ||||||||||||| ||||||||||||||| ||||||||  |||||||| | ||||||||||||||||||||| |||||||||    
T  12543461 aaaggaaaatgatccatgtacaccctttcatgtacacccccatatacaacccttatgtggcatgggtattttggaaatttca 12543380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 380 - 424
Target Start/End: Original strand, 7744523 - 7744567
Alignment:
Q  380 atatacacctcttatgtggcatgggtattttagaaatttcacaca 424  Q
    ||||||||| ||||||||||||||||||||| |||||||||||||    
T  7744523 atatacaccccttatgtggcatgggtattttggaaatttcacaca 7744567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 342 - 424
Target Start/End: Original strand, 24917424 - 24917506
Alignment:
Q  342 ggaaaatgattcatgtacaccctttcttgtacaccttcatatacacctcttatgtggcatgggtattttagaaatttcacaca 424  Q
    |||||||||||  |  |||| ||||| |||||| |  |||||||||| ||||||||||||||||||||| |||||||||||||    
T  24917424 ggaaaatgattggtagacacactttcatgtacatccccatatacaccccttatgtggcatgggtattttggaaatttcacaca 24917506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 379 - 424
Target Start/End: Original strand, 1080887 - 1080932
Alignment:
Q  379 catatacacctcttatgtggcatgggtattttagaaatttcacaca 424  Q
    |||||||||| ||||||||||||||||||||| |||||||||||||    
T  1080887 catatacaccccttatgtggcatgggtattttggaaatttcacaca 1080932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 358 - 424
Target Start/End: Complemental strand, 53281629 - 53281562
Alignment:
Q  358 acaccctttcttgtacaccttcatatacacctc-ttatgtggcatgggtattttagaaatttcacaca 424  Q
    |||| ||||| | ||||||  |||||||||| | |||||||||||||||||||| |||||||||||||    
T  53281629 acacactttcatctacacccccatatacacccccttatgtggcatgggtattttggaaatttcacaca 53281562  T

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