View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10318_high_12 (Length: 242)
Name: NF10318_high_12
Description: NF10318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10318_high_12 |
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Alignment Details
Target: chr1 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 34301003 - 34300783
Alignment:
| Q |
1 |
tgcaataaattttatttgattaacatacatac-tacactattacaaataaaatcagacctatttattcaattaatcaaagtcctccatcttcatacatta |
99 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34301003 |
tgcaataaattttatttgattaacatacatacatacactattacaaataaaatgagacctatttattcaattaatcaaagtcctccatcttcatacatta |
34300904 |
T |
|
| Q |
100 |
gtaggcatatgagattttattcaaatttatagtgcttatccacaccaacagaaacatcccaagtacaactcattccttttgggaaaacaaccaaatcacc |
199 |
Q |
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| T |
34300903 |
g---gcatatgagattttattcaaatttatagtgcttatccacaccaacagaaacatcccaagtacaactcattccttttgggaaaacaaccaaatcacc |
34300807 |
T |
|
| Q |
200 |
agcagaaatttcaactgcctcatt |
223 |
Q |
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|||||||||||||||||||||||| |
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| T |
34300806 |
agcagaaatttcaactgcctcatt |
34300783 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 119 - 181
Target Start/End: Original strand, 29986114 - 29986176
Alignment:
| Q |
119 |
ttcaaatttatagtgcttatccacaccaacagaaacatcccaagtacaactcattccttttgg |
181 |
Q |
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||||||||| |||| |||||| ||| ||| ||||||||||||||||||||| | ||||||||| |
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| T |
29986114 |
ttcaaatttgtagtacttatcaacagcaatagaaacatcccaagtacaacttagtccttttgg |
29986176 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 46; Significance: 2e-17; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 128 - 225
Target Start/End: Original strand, 20658314 - 20658411
Alignment:
| Q |
128 |
atagtgcttatccacaccaacagaaacatcccaagtacaactcattccttttgggaaaacaaccaaatcaccagcagaaatttcaactgcctcatttg |
225 |
Q |
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| T |
20658314 |
atagtgcttgttcacagcaacagacacatcccaagtacaactcatccctttaggaaacacaaccaagtcaccagcaccaaattcaactgactcatttg |
20658411 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 128 - 225
Target Start/End: Complemental strand, 12027643 - 12027546
Alignment:
| Q |
128 |
atagtgcttatccacaccaacagaaacatcccaagtacaactcattccttttgggaaaacaaccaaatcaccagcagaaatttcaactgcctcatttg |
225 |
Q |
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| T |
12027643 |
atagtgcttgttcacagcaacagacacatcccaagtacaagtcatccctttaggaaacacaaccaagtcaccagcaccaaattcaactgactcatttg |
12027546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 128 - 225
Target Start/End: Complemental strand, 12034563 - 12034466
Alignment:
| Q |
128 |
atagtgcttatccacaccaacagaaacatcccaagtacaactcattccttttgggaaaacaaccaaatcaccagcagaaatttcaactgcctcatttg |
225 |
Q |
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| T |
12034563 |
atagtgcttgttcacagcaacagacacatcccaagtacaagtcatccctttaggaaacacaaccaagtcaccagcaccaaattcaactgactcatttg |
12034466 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 115 - 200
Target Start/End: Complemental strand, 35114371 - 35114286
Alignment:
| Q |
115 |
tttattcaaatttatagtgcttatccacaccaacagaaacatcccaagtacaactcattccttttgggaaaacaaccaaatcacca |
200 |
Q |
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|||||||||| | |||||| || | |||| ||||||| |||||||||||||||||||| ||||| || || |||||||| |||||| |
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| T |
35114371 |
tttattcaaagtgatagtgtttgttcacagcaacagacacatcccaagtacaactcatgcctttaggaaacacaaccaagtcacca |
35114286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 118 - 181
Target Start/End: Complemental strand, 39756305 - 39756242
Alignment:
| Q |
118 |
attcaaatttatagtgcttatccacaccaacagaaacatcccaagtacaactcattccttttgg |
181 |
Q |
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|||||||||| |||| ||| || ||| | ||||||||||||||||||||||| | ||||||||| |
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|
| T |
39756305 |
attcaaatttgtagtacttgtcaacagctacagaaacatcccaagtacaactgagtccttttgg |
39756242 |
T |
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