View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10318_high_15 (Length: 212)
Name: NF10318_high_15
Description: NF10318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10318_high_15 |
 | |
|
| [»] scaffold0010 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 10484817 - 10484617
Alignment:
| Q |
1 |
tatgttttgctacttgaggtatccactatcaccagaacctccaccatcatttgtcctattgaccctgtagttactatgttcaacaatggacacccttttt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10484817 |
tatgttttgctacttgaggtatccactatcaccagaacctccaccatcatttgtcctattgaccctgtagttactatgttcaacaatggacacccttttt |
10484718 |
T |
|
| Q |
101 |
ctgatgttctttcaaaaatatgatacattgttttactattgcacgtgcatcactcccttgggcctacaaaagacaaaagtttctatatgcggctacttca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10484717 |
ctgatgttctttcaaaaatatgatacattgttttactattgcacgtgcatcactcccttgggcctacaaaagacaaaagtttctatatgcggctacttca |
10484618 |
T |
|
| Q |
201 |
t |
201 |
Q |
| |
|
| |
|
|
| T |
10484617 |
t |
10484617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 84; Significance: 4e-40; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 1 - 150
Target Start/End: Original strand, 4951078 - 4951235
Alignment:
| Q |
1 |
tatgttttgctacttgaggtatccact------atcaccagaacctccaccatcatttgtcctattgaccct---gtagttactatgttcaacaatggac |
91 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| |||| ||||||||| | ||||||||||||| |
|
|
| T |
4951078 |
tatgttttgctacttgaggtatccactatcactatcaccagaacctccaccatcatttgtcatattggccctgtagtagttactcttttcaacaatggac |
4951177 |
T |
|
| Q |
92 |
accctttttctgatgttctttcaaaa-atatgatacattgttttactattgcacgtgcat |
150 |
Q |
| |
|
|||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
4951178 |
accctttt--ggatgttctttcaaaacatatgatacattgttttactattgcacgtgcat |
4951235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0010 (Bit Score: 49; Significance: 3e-19; HSPs: 1)
Name: scaffold0010
Description:
Target: scaffold0010; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 223787 - 223735
Alignment:
| Q |
1 |
tatgttttgctacttgaggtatccactatcaccagaacctccaccatcatttg |
53 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
223787 |
tatgttttgctacttgaggtatccactatcaccaaaacctccaccatcatttg |
223735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University