View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10318_high_5 (Length: 361)
Name: NF10318_high_5
Description: NF10318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10318_high_5 |
 | |
|
| [»] chr8 (7 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 345; Significance: 0; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 13 - 361
Target Start/End: Complemental strand, 2929100 - 2928752
Alignment:
| Q |
13 |
gaagctgttcaaagtcttatcaactcgagtttccatgagacaacagagccgatcaatgtaagctatagtttgtcattgtcatcaggggaaatcattacaa |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2929100 |
gaagctgttcaaagtcttatcaactcgagtttccatgagacaacagagccgatcaatgtaagctatagtttgtcattgtcatcaggggaaatcattacaa |
2929001 |
T |
|
| Q |
113 |
agaaagcaaacaaaagggtacgttgggaaagtcaaagctgcaagtttatcatccagaagatggaggaagttcctggtgatgcattgagatgtgctacaag |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2929000 |
agaaagcaaacaaaagggtacgttgggaaagtcaaagctgcaagtttatcatccagaagatggaggaagttcctggtgatgcattgagatgtgctacaag |
2928901 |
T |
|
| Q |
213 |
tttctctgaagcaatatccgagggtattttgcgtgagaatcatgatcatgttgctgcactctcggaactaatcacattaggctttgttctgaaatttaag |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
2928900 |
tttctctgaagcaatatccgagggtattttgcgtgagaatcatgatcatgttgctgcactctcggaactaatcacactaggctttgttctgaaatttaag |
2928801 |
T |
|
| Q |
313 |
aatgaagaaattgattttctaatggaatccaagaatcttcagattgacc |
361 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2928800 |
aatgaagaaattgattttctaatggaatccaagaatcttcagattgacc |
2928752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 6 - 361
Target Start/End: Original strand, 3013675 - 3014030
Alignment:
| Q |
6 |
gagagaagaagctgttcaaagtcttatcaactcgagtttccatgagacaacagagccgatcaatgtaagctatagtttgtcattgtcatcaggggaaatc |
105 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||||||||| ||| |
|
|
| T |
3013675 |
gagacaagaagctgttcaaagtcttatcaacttgagtttccatgagacaacagagccaatcaatgtaagctatagtttatcattatcatcaggggacatc |
3013774 |
T |
|
| Q |
106 |
attacaaagaaagcaaacaaaagggtacgttgggaaagtcaaagctgcaagtttatcatccagaagatggaggaagttcctggtgatgcattgagatgtg |
205 |
Q |
| |
|
||||| |||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | ||||| ||||||| |||||| | || |
|
|
| T |
3013775 |
attaccaagaaatcaaacaaaagggtacgttgggaaagtcaaagttgcaagtttatcatccagaagatggatggagttcttggtgattcattgaagtatg |
3013874 |
T |
|
| Q |
206 |
ctacaagtttctctgaagcaatatccgagggtattttgcgtgagaatcatgatcatgttgctgcactctcggaactaatcacattaggctttgttctgaa |
305 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||| || || ||||||| | |||||||||||||| || ||||| |||| |
|
|
| T |
3013875 |
ctacaaatttctctgaagcaatatccgagggtattttgcgtgagaatcatgatgatattcctgcactggccgaactaatcacattgggttttgtgatgaa |
3013974 |
T |
|
| Q |
306 |
atttaagaatgaagaaattgattttctaatggaatccaagaatcttcagattgacc |
361 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3013975 |
attcaagaatgaagaaattgattttctaatggaatccaagaatcttcagattgacc |
3014030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 13 - 359
Target Start/End: Complemental strand, 2945741 - 2945395
Alignment:
| Q |
13 |
gaagctgttcaaagtcttatcaactcgagtttccatgagacaacagagccgatcaatgtaagctatagtttgtcattgtcatcaggggaaatcattacaa |
112 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||| |||||||||||||||| |
|
|
| T |
2945741 |
gaagctgttcaaagtcttgtcaactcgagtttccatgagacaacagaaccgatcaatgtaagctatagtttatcattatcatcgggggaaatcattacaa |
2945642 |
T |
|
| Q |
113 |
agaaagcaaacaaaagggtacgttgggaaagtcaaagctgcaagtttatcatccagaagatggaggaagttcctggtgatgcattgagatgtgctacaag |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |||||| | |||| | |||||||| |
|
|
| T |
2945641 |
agaaagcaaacaaaagggtacgttgggaaagtcaaagctgtaagtttatcatccagaagattgaggaagttcccggtgattctttgaattatgctacaaa |
2945542 |
T |
|
| Q |
213 |
tttctctgaagcaatatccgagggtattttgcgtgagaatcatgatcatgttgctgcactctcggaactaatcacattaggctttgttctgaaatttaag |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||| ||||| ||||||| | |||||||||||||| || | ||| ||||||| ||| |
|
|
| T |
2945541 |
tttctctgaagcaatatccgagggtattttgcctgagaatcatgattatgttcctgcactggctgaactaatcacattgggttatgtgatgaaattcaag |
2945442 |
T |
|
| Q |
313 |
aatgaagaaattgattttctaatggaatccaagaatcttcagattga |
359 |
Q |
| |
|
|||||||||||||||||||| |||||||| |||||| | |||||||| |
|
|
| T |
2945441 |
aatgaagaaattgattttctcatggaatcgaagaatttgcagattga |
2945395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 70 - 357
Target Start/End: Complemental strand, 2919541 - 2919254
Alignment:
| Q |
70 |
gtaagctatagtttgtcattgtcatcaggggaaatcattacaaagaaagcaaacaaaagggtacgttgggaaagtcaaagctgcaagtttatcatccaga |
169 |
Q |
| |
|
||||| ||||||||||| ||||||||||||| |||||||||||||||| | |||||| |||||| ||||||| |||| | ||||| ||||||||| |
|
|
| T |
2919541 |
gtaagttatagtttgtcgctgtcatcaggggacatcattacaaagaaagaagacaaaatggtacgctgggaaaagaaaagttctaagttcttcatccaga |
2919442 |
T |
|
| Q |
170 |
agatggaggaagttcctggtgatgcattgagatgtgctacaagtttctctgaagcaatatccgagggtattttgcgtgagaatcatgatcatgttgctgc |
269 |
Q |
| |
|
||||||| | | ||| ||||| ||| || ||| ||| |||||||||||||||||| || ||| ||||| ||||||||||||||| |||| |||| |
|
|
| T |
2919441 |
agatggataagcctatgggtaatgcactgaaatatgccacatatttctctgaagcaatatcagaaggtgttttgtgtgagaatcatgatcttgttcctgc |
2919342 |
T |
|
| Q |
270 |
actctcggaactaatcacattaggctttgttctgaaatttaagaatgaagaaattgattttctaatggaatccaagaatcttcagatt |
357 |
Q |
| |
|
||||| ||||| |||||||| || ||| | |||||||| ||||||||||| ||||| ||||| ||||| ||||||||| | |||||| |
|
|
| T |
2919341 |
tctctctgaactgatcacattgggttttatgctgaaattcaagaatgaagatattgaatttctcatggagtccaagaatttacagatt |
2919254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 13 - 344
Target Start/End: Complemental strand, 37794469 - 37794138
Alignment:
| Q |
13 |
gaagctgttcaaagtcttatcaactcgagtttccatgagacaacagagccgatcaatgtaagctatagtttgtcattgtcatcaggggaaatcattacaa |
112 |
Q |
| |
|
|||||||||||| ||||| ||||| |||||||| |||||||| | ||| ||| |||||||||| | | ||| ||||||||||||| |||||||||| |
|
|
| T |
37794469 |
gaagctgttcaaggtcttctcaacctgagtttccttgagacaaaggtcccggtcacggtaagctataatctatcactgtcatcaggggacatcattacaa |
37794370 |
T |
|
| Q |
113 |
agaaagcaaacaaaagggtacgttgggaaagtcaaagctgcaagtttatcatccagaagatggaggaagttcctggtgatgcattgagatgtgctacaag |
212 |
Q |
| |
|
|||||| |||||| |||||| |||||||| ||||| | ||||||| ||||||||||| |||| || || || ||||| ||| || ||| ||| |
|
|
| T |
37794369 |
agaaagatgacaaaatggtacgctgggaaaggcaaagttccaagtttttcatccagaagttggatgagcctcggggaaatgcactgaaatatgcgacata |
37794270 |
T |
|
| Q |
213 |
tttctctgaagcaatatccgagggtattttgcgtgagaatcatgatcatgttgctgcactctcggaactaatcacattaggctttgttctgaaatttaag |
312 |
Q |
| |
|
|||||||||| ||||||| || ||| ||||| ||||||||||||| |||| |||| || || ||| | |||||||| || ||||| |||||||| ||| |
|
|
| T |
37794269 |
tttctctgaaacaatatcagaaggtgttttgtctgagaatcatgattttgttcctgccctatctgaattgatcacattgggttttgtgctgaaattcaag |
37794170 |
T |
|
| Q |
313 |
aatgaagaaattgattttctaatggaatccaa |
344 |
Q |
| |
|
|||||||| ||||| ||||| ||||||||||| |
|
|
| T |
37794169 |
aatgaagatattgaatttctgatggaatccaa |
37794138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 227 - 286
Target Start/End: Complemental strand, 2941880 - 2941821
Alignment:
| Q |
227 |
tatccgagggtattttgcgtgagaatcatgatcatgttgctgcactctcggaactaatca |
286 |
Q |
| |
|
|||| |||||| |||||||||||||||||||||||||| |||||||| | ||||| |||| |
|
|
| T |
2941880 |
tatctgagggtgttttgcgtgagaatcatgatcatgttcctgcactcactgaactgatca |
2941821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 117 - 149
Target Start/End: Complemental strand, 2941982 - 2941950
Alignment:
| Q |
117 |
agcaaacaaaagggtacgttgggaaagtcaaag |
149 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| |
|
|
| T |
2941982 |
agcaaacaaaagggtacgtttggaaagtcaaag |
2941950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 171; Significance: 9e-92; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 171; E-Value: 9e-92
Query Start/End: Original strand, 13 - 359
Target Start/End: Original strand, 4917363 - 4917709
Alignment:
| Q |
13 |
gaagctgttcaaagtcttatcaactcgagtttccatgagacaacagagccgatcaatgtaagctatagtttgtcattgtcatcaggggaaatcattacaa |
112 |
Q |
| |
|
||||||||||||| | || |||||| ||||| |||||||||| ||||| |||||||||||||||||||| ||||| ||||||||| |||||||||| | |
|
|
| T |
4917363 |
gaagctgttcaaaattttctcaacttaagttttcatgagacaaaggagccaatcaatgtaagctatagtttatcattatcatcagggaaaatcattacca |
4917462 |
T |
|
| Q |
113 |
agaaagcaaacaaaagggtacgttgggaaagtcaaagctgcaagtttatcatccagaagatggaggaagttcctggtgatgcattgagatgtgctacaag |
212 |
Q |
| |
|
||||||| ||||||||||| |||||||| |||||||||||||||||||| ||||| |||||||| | || ||||| ||| ||||| || ||||||| |
|
|
| T |
4917463 |
agaaagccaacaaaagggtgcgttgggagagtcaaagctgcaagtttataatccaaaagatggatggagctcctgatgaaatattgaaatatgctacata |
4917562 |
T |
|
| Q |
213 |
tttctctgaagcaatatccgagggtattttgcgtgagaatcatgatcatgttgctgcactctcggaactaatcacattaggctttgttctgaaatttaag |
312 |
Q |
| |
|
||| |||||||||||||| |||||| |||||||||||||||| ||||||||| |||||||| | || ||||||||| || || |||||||||||||| |
|
|
| T |
4917563 |
tttttctgaagcaatatctgagggtgttttgcgtgagaatcacgatcatgttcctgcactcactgatctaatcacaacgggtttctttctgaaatttaag |
4917662 |
T |
|
| Q |
313 |
aatgaagaaattgattttctaatggaatccaagaatcttcagattga |
359 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
4917663 |
aatgaagaaattgattttctaatggaatccaagaatctgcagattga |
4917709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 151; Significance: 8e-80; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 13 - 350
Target Start/End: Original strand, 1508015 - 1508346
Alignment:
| Q |
13 |
gaagctgttcaaagtcttatcaactcgagtttccatgagacaacagagccgatcaatgtaagctatagtttgtcattgtcatcaggggaaatcattacaa |
112 |
Q |
| |
|
||||||||||||| |||| |||||| || ||||||||||||| || || |||||||||||||||||| || || | ||||| || || |||||||||| |
|
|
| T |
1508015 |
gaagctgttcaaactcttctcaacttaagcttccatgagacaatggaaccaatcaatgtaagctatagtctgccactatcatccggagacatcattacaa |
1508114 |
T |
|
| Q |
113 |
agaaagcaaacaaaagggtacgttgggaaagtcaaagctgcaagtttatcatccagaagatggaggaagttcctggtgatgcattgagatgtgctacaag |
212 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||| | |||||||||||||||||||||||| | || ||| |||||| || || ||||| |
|
|
| T |
1508115 |
agaaagcaaacaaaagggtgcgttgggaaagtcaaagttccaagtttatcatccagaagatggatgg------tgaggattcattgaaatatgttacaaa |
1508208 |
T |
|
| Q |
213 |
tttctctgaagcaatatccgagggtattttgcgtgagaatcatgatcatgttgctgcactctcggaactaatcacattaggctttgttctgaaatttaag |
312 |
Q |
| |
|
|||||||||||||||||| |||||| |||||| ||| ||||||||||||||| ||||||| || |||||||||||||||| ||| |||||||||| ||| |
|
|
| T |
1508209 |
tttctctgaagcaatatctgagggtgttttgcatgaaaatcatgatcatgttcctgcactatctaaactaatcacattagggttttttctgaaattcaag |
1508308 |
T |
|
| Q |
313 |
aatgaagaaattgattttctaatggaatccaagaatct |
350 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| |||| |
|
|
| T |
1508309 |
aatgaagaaattgattttcttatggaatccaagtatct |
1508346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 52; Significance: 9e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 89 - 344
Target Start/End: Complemental strand, 28023406 - 28023151
Alignment:
| Q |
89 |
tgtcatcaggggaaatcattacaaagaaagcaaacaaaagggtacgttgggaaagtcaaagctgcaagtttatcatccagaagatggaggaagttcctgg |
188 |
Q |
| |
|
||||||||||||| ||| |||||||||||| |||||| ||| || |||||||| ||||| | ||||||| ||||||||||| |||| || || | |
|
|
| T |
28023406 |
tgtcatcaggggacatcgttacaaagaaagatgacaaaatggttcgctgggaaaggcaaagttccaagtttttcatccagaagttggatgagcctcagag |
28023307 |
T |
|
| Q |
189 |
tgatgcattgagatgtgctacaagtttctctgaagcaatatccgagggtattttgcgtgagaatcatgatcatgttgctgcactctcggaactaatcaca |
288 |
Q |
| |
|
||||| ||| || ||| ||| | |||||||| ||||||| || ||| ||||| ||||||||| ||| |||| |||| ||||| ||| | |||||| |
|
|
| T |
28023306 |
aaatgcactgaaatatgccacatatgtctctgaaacaatatcagaaggtgttttgtctgagaatcacgattttgttcctgccctctctgaattgatcaca |
28023207 |
T |
|
| Q |
289 |
ttaggctttgttctgaaatttaagaatgaagaaattgattttctaatggaatccaa |
344 |
Q |
| |
|
|| || ||||| |||||||| ||||||||||| ||||| || || ||||||||||| |
|
|
| T |
28023206 |
ttgggttttgtgctgaaattcaagaatgaagatattgaattcctgatggaatccaa |
28023151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University