View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10318_high_9 (Length: 291)

Name: NF10318_high_9
Description: NF10318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10318_high_9
NF10318_high_9
[»] chr8 (7 HSPs)
chr8 (19-147)||(25391961-25392092)
chr8 (192-281)||(25358820-25358909)
chr8 (192-281)||(25392139-25392228)
chr8 (170-251)||(25650621-25650707)
chr8 (19-98)||(25617859-25617938)
chr8 (185-217)||(25617952-25617984)
chr8 (119-147)||(25358745-25358773)
[»] scaffold0466 (3 HSPs)
scaffold0466 (170-281)||(6508-6619)
scaffold0466 (19-79)||(7737-7797)
scaffold0466 (99-147)||(6660-6708)
[»] scaffold1041 (2 HSPs)
scaffold1041 (172-223)||(605-656)
scaffold1041 (46-107)||(708-778)
[»] chr1 (1 HSPs)
chr1 (190-257)||(32973771-32973838)


Alignment Details
Target: chr8 (Bit Score: 105; Significance: 2e-52; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 19 - 147
Target Start/End: Original strand, 25391961 - 25392092
Alignment:
Q  19 ctaagtttgtgtatgcataatttgaaaagagacataa-taatgt--ggattatccattccctcatagatatctttaagtcatcgaggtgataagacctct 115  Q
    ||||||||||||||||||||||||||||||||||||| ||||||  ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||    
T  25391961 ctaagtttgtgtatgcataatttgaaaagagacataaataatgtatggattatccattccctcatagatatctttaagtcatcaaggtgataagagctct 25392060  T
Q  116 gtgttgtcatagtggtatgaatactacatgtg 147  Q
    ||||||||||||||||||||||||||||||||    
T  25392061 gtgttgtcatagtggtatgaatactacatgtg 25392092  T

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Target: chr8; HSP #2
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 192 - 281
Target Start/End: Original strand, 25358820 - 25358909
Alignment:
Q  192 ttgttcaacttctctaaatttttcttcttcaaattctggaaggaaaccgtattccttttagtgagtaataacgtctcactctccttcttc 281  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||    
T  25358820 ttgttcaacttctctaaatttttcttcttcaaattctggaaggaaaccgtattccttttagtgagtaataacatctcactttccttcttc 25358909  T

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Target: chr8; HSP #3
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 192 - 281
Target Start/End: Original strand, 25392139 - 25392228
Alignment:
Q  192 ttgttcaacttctctaaatttttcttcttcaaattctggaaggaaaccgtattccttttagtgagtaataacgtctcactctccttcttc 281  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||    
T  25392139 ttgttcaacttctctaaatttttcttcttcaaattctggaagaaaaccgtattccttttggtgagtaataacgtctcactctccttcttc 25392228  T

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Target: chr8; HSP #4
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 170 - 251
Target Start/End: Original strand, 25650621 - 25650707
Alignment:
Q  170 acaattttggtaagtgtgacactt-----gttcaacttctctaaatttttcttcttcaaattctggaaggaaaccgtattcctttta 251  Q
    ||||||||||||||||||||||||     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25650621 acaattttggtaagtgtgacacttagcttgttcaacttctctaaatttttcttcttcaaattctggaaggaaaccgtattcctttta 25650707  T

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Target: chr8; HSP #5
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 19 - 98
Target Start/End: Original strand, 25617859 - 25617938
Alignment:
Q  19 ctaagtttgtgtatgcataatttgaaaagagacataataatgtggattatccattccctcatagatatctttaagtcatc 98  Q
    |||||||||||||||||||||||||| ||||||||||||||| | | |||||||||||||||||||||||||||||||||    
T  25617859 ctaagtttgtgtatgcataatttgaagagagacataataatgcgaagtatccattccctcatagatatctttaagtcatc 25617938  T

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Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 185 - 217
Target Start/End: Original strand, 25617952 - 25617984
Alignment:
Q  185 gtgacacttgttcaacttctctaaatttttctt 217  Q
    |||||||||||||||||||||||||||||||||    
T  25617952 gtgacacttgttcaacttctctaaatttttctt 25617984  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 119 - 147
Target Start/End: Original strand, 25358745 - 25358773
Alignment:
Q  119 ttgtcatagtggtatgaatactacatgtg 147  Q
    |||||||||||||||||||||||||||||    
T  25358745 ttgtcatagtggtatgaatactacatgtg 25358773  T

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Target: scaffold0466 (Bit Score: 100; Significance: 2e-49; HSPs: 3)
Name: scaffold0466
Description:

Target: scaffold0466; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 170 - 281
Target Start/End: Complemental strand, 6619 - 6508
Alignment:
Q  170 acaattttggtaagtgtgacacttgttcaacttctctaaatttttcttcttcaaattctggaaggaaaccgtattccttttagtgagtaataacgtctca 269  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||     
T  6619 acaattttggtaagtgtgacacttgttcaacttctctaaatttttcttcttcaaattcttgaaggaaaccgtattcctttgagtgagtaataacgtctcg 6520  T
Q  270 ctctccttcttc 281  Q
    ||||||||||||    
T  6519 ctctccttcttc 6508  T

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Target: scaffold0466; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 19 - 79
Target Start/End: Complemental strand, 7797 - 7737
Alignment:
Q  19 ctaagtttgtgtatgcataatttgaaaagagacataataatgtggattatccattccctca 79  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  7797 ctaagtttgtgtatgcataatttgaagagagacataataatgtggattatccattccctca 7737  T

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Target: scaffold0466; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 99 - 147
Target Start/End: Complemental strand, 6708 - 6660
Alignment:
Q  99 gaggtgataagacctctgtgttgtcatagtggtatgaatactacatgtg 147  Q
    |||||||||||| || ||||||||||||||| |||| ||||||| ||||    
T  6708 gaggtgataagagctatgtgttgtcatagtgatatggatactacgtgtg 6660  T

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Target: scaffold1041 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: scaffold1041
Description:

Target: scaffold1041; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 172 - 223
Target Start/End: Complemental strand, 656 - 605
Alignment:
Q  172 aattttggtaagtgtgacacttgttcaacttctctaaatttttcttcttcaa 223  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  656 aattttggtaagcgtgacacttgttcaacttctctaaatttttcttcttcaa 605  T

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Target: scaffold1041; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 107
Target Start/End: Complemental strand, 778 - 708
Alignment:
Q  46 agagacataataatgtggattatcc---------attccctcatagatatctttaagtcatcgaggtgata 107  Q
    |||||||||||||||||||||||||         ||| ||||||||| |||||||||||||||||||||||    
T  778 agagacataataatgtggattatccatttcctcaatttcctcatagagatctttaagtcatcgaggtgata 708  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 190 - 257
Target Start/End: Complemental strand, 32973838 - 32973771
Alignment:
Q  190 acttgttcaacttctctaaatttttcttcttcaaattctggaaggaaaccgtattccttttagtgagt 257  Q
    ||||||| ||| |||||| || ||||||||||||||| ||||| ||||  ||||||||||| ||||||    
T  32973838 acttgttgaacgtctctagatgtttcttcttcaaattatggaaagaaattgtattcctttttgtgagt 32973771  T

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