View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10318_low_11 (Length: 254)
Name: NF10318_low_11
Description: NF10318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10318_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 37097043 - 37096802
Alignment:
| Q |
1 |
taatcatatttgaaaaatgaaaccttaaaatgtgatttggtgaacatgtaggaatcccaaaagcaagcccttgcagaatcaacaggcctagatttgaagc |
100 |
Q |
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| T |
37097043 |
taatcatatttgaaaaatgaaaccttaaaatgtgatttggtgaacatgtaggaatcccaaaagcaagcccttgcagaatcaacaggcctagatttgaagc |
37096944 |
T |
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| Q |
101 |
agatcaacaattggttcattaatcagagaaaacgtcactggaagccttctgaggatatgcaatttgctgtgatggatgccacaaattactacatggaaaa |
200 |
Q |
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| T |
37096943 |
agatcaacaattggttcattaatcagagaaaacgtcactggaagccttctgaggatatgcaatttgctgtgatggatgccacaaattactacatggaaaa |
37096844 |
T |
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| Q |
201 |
tgtcatgtgcaagccattccctatggatgccatgcctatgct |
242 |
Q |
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| T |
37096843 |
tgtcatgtgcaagccattccctatggatgccatgcctatgct |
37096802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 96 - 176
Target Start/End: Original strand, 14552662 - 14552742
Alignment:
| Q |
96 |
gaagcagatcaacaattggttcattaatcagagaaaacgtcactggaagccttctgaggatatgcaatttgctgtgatgga |
176 |
Q |
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| T |
14552662 |
gaagcaaattaacaattggtttattaatcaaagaaaacgtcattggaaaccatctgagaatatgcagttttctatgatgga |
14552742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 73 - 177
Target Start/End: Complemental strand, 8791995 - 8791891
Alignment:
| Q |
73 |
gcagaatcaacaggcctagatttgaagcagatcaacaattggttcattaatcagagaaaacgtcactggaagccttctgaggatatgcaatttgctgtga |
172 |
Q |
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| T |
8791995 |
gcagaatcaacaggtcttgatcagaagcaaataaacaactggtttattaatcaaaggaaacggcactggaagccttcagaggacatgcagtttgtggtga |
8791896 |
T |
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| Q |
173 |
tggat |
177 |
Q |
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||||| |
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| T |
8791895 |
tggat |
8791891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 177
Target Start/End: Complemental strand, 8780452 - 8780396
Alignment:
| Q |
121 |
aatcagagaaaacgtcactggaagccttctgaggatatgcaatttgctgtgatggat |
177 |
Q |
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||||| |||||||| |||||||||||||| ||||| ||||| |||| ||||||||| |
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| T |
8780452 |
aatcaaagaaaacggcactggaagccttcagaggacatgcagtttgtggtgatggat |
8780396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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