View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10318_low_16 (Length: 230)
Name: NF10318_low_16
Description: NF10318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10318_low_16 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 12 - 230
Target Start/End: Complemental strand, 34301211 - 34300995
Alignment:
| Q |
12 |
agaacaatgcttgatccgagaatgaatgcttttgaaagggaacagtaaaaacaccacaaaaacttatccagtgataccttaaatttgggttcacactggt |
111 |
Q |
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| T |
34301211 |
agaacaatgcttgatccgagaatgaatgcttttgaaagggaacagtaaaaacaccacaaaaacttatccagtgataccttaaatttgggttcacactggt |
34301112 |
T |
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| Q |
112 |
cccacttatttaggaaacctatttttatggtcttaaaatagtaaaataagtacaagaatataacttacagnnnnnnnnnnaaaggaattatataattaac |
211 |
Q |
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| T |
34301111 |
cccacttatttaggaaacctatttttatggtcttaaaatagtaaaataagtacaagaatataacttacag--ttttttttaaaggaattatataattaac |
34301014 |
T |
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| Q |
212 |
atgaaccttgtgcaataaa |
230 |
Q |
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||||||||||||||||||| |
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| T |
34301013 |
atgaaccttgtgcaataaa |
34300995 |
T |
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