View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10318_low_17 (Length: 223)

Name: NF10318_low_17
Description: NF10318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10318_low_17
NF10318_low_17
[»] chr1 (11 HSPs)
chr1 (15-205)||(1868437-1868627)
chr1 (15-205)||(1842828-1843018)
chr1 (21-205)||(1856848-1857029)
chr1 (18-205)||(1816015-1816199)
chr1 (15-94)||(9161948-9162027)
chr1 (21-115)||(9156015-9156109)
chr1 (15-87)||(9118425-9118497)
chr1 (15-87)||(9218864-9218936)
chr1 (15-102)||(9229734-9229821)
chr1 (15-87)||(9170781-9170853)
chr1 (15-87)||(9200348-9200420)
[»] chr7 (1 HSPs)
chr7 (39-165)||(37572123-37572246)
[»] chr3 (4 HSPs)
chr3 (15-82)||(40568396-40568463)
chr3 (15-94)||(40597784-40597863)
chr3 (15-94)||(40572997-40573076)
chr3 (15-82)||(40591302-40591369)
[»] chr2 (1 HSPs)
chr2 (15-67)||(2015288-2015340)


Alignment Details
Target: chr1 (Bit Score: 183; Significance: 4e-99; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 15 - 205
Target Start/End: Original strand, 1868437 - 1868627
Alignment:
Q  15 cataggaatgtggtcaaactcttggggtgttgtttagagacagaagttcctttgttggtttatgaatttgttaccaatggcaccctttctggttttatac 114  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1868437 cataggaatgttgtcaaactcttggggtgttgtttagagacagaagttcctttgttggtttatgaatttgttaccaatggcaccctttctggttttatac 1868536  T
Q  115 acacacaaggtaataaggtgaataatgaaacatggaaaactcgtcttaagatagccgcagaggtagctgaagctttgtcatatctacattc 205  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1868537 acacacaaagtaataaggtgaataatgaaacatggaaaactcgtcttaagatagccgcagaggtagctgaagctttgtcatatctacattc 1868627  T

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Target: chr1; HSP #2
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 15 - 205
Target Start/End: Original strand, 1842828 - 1843018
Alignment:
Q  15 cataggaatgtggtcaaactcttggggtgttgtttagagacagaagttcctttgttggtttatgaatttgttaccaatggcaccctttctggttttatac 114  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1842828 cataggaatgttgtcaaactcttggggtgttgtttagagacagaagttcctttgttggtttatgaatttgttaccaatggcaccctttctggttttatac 1842927  T
Q  115 acacacaaggtaataaggtgaataatgaaacatggaaaactcgtcttaagatagccgcagaggtagctgaagctttgtcatatctacattc 205  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  1842928 acacacaaagtaataaggtgaataatgaaacatggaaaactcgtcttaagatagccgcagaggtagctgaaactttgtcatatctacattc 1843018  T

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Target: chr1; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 21 - 205
Target Start/End: Original strand, 1856848 - 1857029
Alignment:
Q  21 aatgtggtcaaactcttggggtgttgtttagagacagaagttcctttgttggtttatgaatttgttaccaatggcaccctttctggttttatacacacac 120  Q
    ||||||||||||||||| ||||||||| |||| |||||||||||||||||||||||||| ||||||| |||||| || |||||||  ||||| ||||||     
T  1856848 aatgtggtcaaactcttagggtgttgtctagaaacagaagttcctttgttggtttatgagtttgttagcaatggtactctttctgaatttattcacacaa 1856947  T
Q  121 aaggtaataaggtgaataatgaaacatggaaaactcgtcttaagatagccgcagaggtagctgaagctttgtcatatctacattc 205  Q
    ||||   ||||  |||| ||  ||| ||||| |||||||||||||||||||||||||||||||| ||| ||||||||||||||||    
T  1856948 aagg---taagacgaatgatccaacttggaagactcgtcttaagatagccgcagaggtagctgaggctctgtcatatctacattc 1857029  T

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Target: chr1; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 18 - 205
Target Start/End: Complemental strand, 1816199 - 1816015
Alignment:
Q  18 aggaatgtggtcaaactcttggggtgttgtttagagacagaagttcctttgttggtttatgaatttgttaccaatggcaccctttctggttttatacaca 117  Q
    |||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| ||||||| |||||| || |||||||  ||| | | ||    
T  1816199 aggaatgtggtcaaactcttggggtgttgtctagaaacagaagttcctttgttggtttatgagtttgttagcaatggtactctttctgaatttcttcgca 1816100  T
Q  118 cacaaggtaataaggtgaataatgaaacatggaaaactcgtcttaagatagccgcagaggtagctgaagctttgtcatatctacattc 205  Q
    |||||||   ||||  |||  ||   || |||||||||||||||| |||||| |  |||||||||| |||| |||||||||| |||||    
T  1816099 cacaagg---taagacgaacgatcttacttggaaaactcgtcttaggatagctgttgaggtagctggagctctgtcatatctgcattc 1816015  T

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Target: chr1; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 15 - 94
Target Start/End: Complemental strand, 9162027 - 9161948
Alignment:
Q  15 cataggaatgtggtcaaactcttggggtgttgtttagagacagaagttcctttgttggtttatgaatttgttaccaatgg 94  Q
    ||||| ||||| |||||||||||||| ||||||||||||||||||||||||| |||||| |||||||| |||| ||||||    
T  9162027 catagaaatgttgtcaaactcttgggatgttgtttagagacagaagttccttcgttggtgtatgaattcgttagcaatgg 9161948  T

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Target: chr1; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 21 - 115
Target Start/End: Complemental strand, 9156109 - 9156015
Alignment:
Q  21 aatgtggtcaaactcttggggtgttgtttagagacagaagttcctttgttggtttatgaatttgttaccaatggcaccctttctggttttataca 115  Q
    ||||| |||||||||||||| |||||||||||||||||||||||||  |||||||||||||| |||| |||||| || |||| || ||| |||||    
T  9156109 aatgttgtcaaactcttgggatgttgtttagagacagaagttccttccttggtttatgaattcgttagcaatggtacactttttgatttcataca 9156015  T

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Target: chr1; HSP #7
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 15 - 87
Target Start/End: Original strand, 9118425 - 9118497
Alignment:
Q  15 cataggaatgtggtcaaactcttggggtgttgtttagagacagaagttcctttgttggtttatgaatttgtta 87  Q
    ||||||||||| |||||||| || ||||||||||||||||||||||||||||  ||||| |||||||| ||||    
T  9118425 cataggaatgttgtcaaacttttagggtgttgtttagagacagaagttccttccttggtctatgaattcgtta 9118497  T

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Target: chr1; HSP #8
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 15 - 87
Target Start/End: Complemental strand, 9218936 - 9218864
Alignment:
Q  15 cataggaatgtggtcaaactcttggggtgttgtttagagacagaagttcctttgttggtttatgaatttgtta 87  Q
    |||||||| || |||||||| || ||||||||||| |||||||||||||||| |||||| |||||||||||||    
T  9218936 cataggaacgttgtcaaacttttagggtgttgtttggagacagaagttccttcgttggtgtatgaatttgtta 9218864  T

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Target: chr1; HSP #9
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 15 - 102
Target Start/End: Complemental strand, 9229821 - 9229734
Alignment:
Q  15 cataggaatgtggtcaaactcttggggtgttgtttagagacagaagttcctttgttggtttatgaatttgttaccaatggcacccttt 102  Q
    ||||| ||||| |||||||||||||| |||||||| |||||| ||||||||||  | |||||||||||| ||| |||||| |||||||    
T  9229821 catagaaatgttgtcaaactcttgggatgttgtttggagacacaagttcctttactagtttatgaatttattagcaatggtacccttt 9229734  T

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Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 15 - 87
Target Start/End: Complemental strand, 9170853 - 9170781
Alignment:
Q  15 cataggaatgtggtcaaactcttggggtgttgtttagagacagaagttcctttgttggtttatgaatttgtta 87  Q
    ||||||||||| ||||||||| | ||||||||| ||||||||||||||||||  ||||| || ||||||||||    
T  9170853 cataggaatgttgtcaaactcctagggtgttgtctagagacagaagttccttcattggtgtacgaatttgtta 9170781  T

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Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 87
Target Start/End: Complemental strand, 9200420 - 9200348
Alignment:
Q  15 cataggaatgtggtcaaactcttggggtgttgtttagagacagaagttcctttgttggtttatgaatttgtta 87  Q
    ||||||||||| ||||||||| | || |||||| ||||||||||||||||||  || || || ||||||||||    
T  9200420 cataggaatgttgtcaaactcctaggctgttgtctagagacagaagttccttcattagtgtacgaatttgtta 9200348  T

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Target: chr7 (Bit Score: 49; Significance: 3e-19; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 39 - 165
Target Start/End: Original strand, 37572123 - 37572246
Alignment:
Q  39 gggtgttgtttagagacagaagttcctttgttggtttatgaatttgttaccaatggcaccctttctggttttatacacacacaaggtaataaggtgaata 138  Q
    ||||||||| |||| ||||||||||||  |||||||||||| ||||||| |||||| || |||||||  |||||||||||||||||||| |   |||||     
T  37572123 gggtgttgtctagaaacagaagttcctcggttggtttatgagtttgttagcaatggtactctttctgaatttatacacacacaaggtaaga---tgaatg 37572219  T
Q  139 atgaaacatggaaaactcgtcttaaga 165  Q
    ||  ||| | |||||||||||||||||    
T  37572220 atccaacttagaaaactcgtcttaaga 37572246  T

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Target: chr3 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 15 - 82
Target Start/End: Original strand, 40568396 - 40568463
Alignment:
Q  15 cataggaatgtggtcaaactcttggggtgttgtttagagacagaagttcctttgttggtttatgaatt 82  Q
    ||||| |||||||| || |||||||| ||||||||||||||||||||||| ||| | |||||||||||    
T  40568396 catagaaatgtggtaaagctcttgggttgttgtttagagacagaagttcccttgcttgtttatgaatt 40568463  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 94
Target Start/End: Original strand, 40597784 - 40597863
Alignment:
Q  15 cataggaatgtggtcaaactcttggggtgttgtttagagacagaagttcctttgttggtttatgaatttgttaccaatgg 94  Q
    |||||||||||||| |||||  | || ||||||||||| ||||||||||| ||| | |||||||||||| || |||||||    
T  40597784 cataggaatgtggtaaaacttgtaggttgttgtttagaaacagaagttccattgcttgtttatgaatttattcccaatgg 40597863  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 94
Target Start/End: Original strand, 40572997 - 40573076
Alignment:
Q  15 cataggaatgtggtcaaactcttggggtgttgtttagagacagaagttcctttgttggtttatgaatttgttaccaatgg 94  Q
    ||||| |||||||| ||  ||||||| ||||||||||||||||||||||| ||  | || ||||||||| || |||||||    
T  40572997 catagaaatgtggtaaagatcttgggctgttgtttagagacagaagttcccttagttgtgtatgaatttattcccaatgg 40573076  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 82
Target Start/End: Original strand, 40591302 - 40591369
Alignment:
Q  15 cataggaatgtggtcaaactcttggggtgttgtttagagacagaagttcctttgttggtttatgaatt 82  Q
    ||||| |||||||| | | | ||||| ||||||||||||||||||||||| ||| | |||||||||||    
T  40591302 catagaaatgtggtaagaattttgggttgttgtttagagacagaagttccattgcttgtttatgaatt 40591369  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 15 - 67
Target Start/End: Complemental strand, 2015340 - 2015288
Alignment:
Q  15 cataggaatgtggtcaaactcttggggtgttgtttagagacagaagttccttt 67  Q
    ||||| |||||||| || |||||||| ||||||||||||||||||||||||||    
T  2015340 catagaaatgtggtaaagctcttgggttgttgtttagagacagaagttccttt 2015288  T

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