View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10318_low_18 (Length: 218)
Name: NF10318_low_18
Description: NF10318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10318_low_18 |
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Alignment Details
Target: chr8 (Bit Score: 109; Significance: 5e-55; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 12 - 201
Target Start/End: Complemental strand, 8750970 - 8750777
Alignment:
| Q |
12 |
gagaagaacgttacaatctnnnnnnntacaatgcaactaactactaaaaattacaagnnnnnnntacaagacgtaatgagaacgactaatcaagtaatgt |
111 |
Q |
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| T |
8750970 |
gagaagaacgttacaatctaaaaaaatacaatgcaactaactactaaaaattacaagaaaaaaatacaagacgtaatgagaacgactaatcaagtaatgt |
8750871 |
T |
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| Q |
112 |
tgatgaagaaagtggtagtagccgaagta-at-attcataga--actctcggacctatttataggctcgttgaaaaatcatccggtatctccac |
201 |
Q |
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| T |
8750870 |
tgatgaagaaagtggtagtagccgaagtacataattcatagaacactctcagacctatttataggctcgttaaaaaattatccggtgtctccac |
8750777 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 98 - 201
Target Start/End: Complemental strand, 8756550 - 8756446
Alignment:
| Q |
98 |
taatcaagtaatgttgatgaagaaagtggtagtagccgaagta-at-attcatagaactctcggacctatttataggctcgttgaaaaatcatccggtat |
195 |
Q |
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||||||| ||||||||| |||||||||||||||| ||||| || || |||||||||| |||| |||||||||| || |||||| |||||||| ||| | |
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| T |
8756550 |
taatcaaataatgttgacgaagaaagtggtagtaaccgaaatacataattcatagaagtctcaaacctatttat-gggtcgttggaaaatcatttggtgt |
8756452 |
T |
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| Q |
196 |
ctccac |
201 |
Q |
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|||||| |
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| T |
8756451 |
ctccac |
8756446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 129
Target Start/End: Original strand, 25953658 - 25953690
Alignment:
| Q |
97 |
ctaatcaagtaatgttgatgaagaaagtggtag |
129 |
Q |
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| T |
25953658 |
ctaatcaagaaatgttgatgaagaaagtggtag |
25953690 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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