View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10318_low_2 (Length: 455)
Name: NF10318_low_2
Description: NF10318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10318_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 272; Significance: 1e-152; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 17 - 312
Target Start/End: Complemental strand, 42759922 - 42759627
Alignment:
| Q |
17 |
aaacctttagtttttcatttagtttgtatttgtatttcaaaattccccttgcttgaatagagcacaacattaattaagggctattgaactttcgttttga |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| |
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| T |
42759922 |
aaacctttagtttttcatttagtttgtatttgtatttcgaaattccccttgcttgaatagagcacaacattagttaagggttattgaactttcgttttga |
42759823 |
T |
|
| Q |
117 |
aaaccaacacatctatccatctgtaatcctctttttcccatgcatgttaacacaatcatgcaccttattccctctgtatatatatacatgcctgactgtt |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
42759822 |
aaaccaacacatctatccatctgtaatcctctttttcccatgcatattaacacaatcatgcactttattccctctgtatatatatacatgcctgactgtt |
42759723 |
T |
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| Q |
217 |
tgcattttactcatctgtttctaaactttcctcaatcttagcagttaaacttggtgtgcatggagctgtgatttgctggagttaatttgatggtcg |
312 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42759722 |
tgcattttactcatctgtttctaaactttcttcaatcttagcagttaaacttggtgtgcatggagctgtgatttgctggagttaatttgatggtcg |
42759627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 374 - 445
Target Start/End: Complemental strand, 42759505 - 42759433
Alignment:
| Q |
374 |
gactatttctgtttaatt-aagtatccagtttcatttcaattccatttatatttttccctaagtaattctctg |
445 |
Q |
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|||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42759505 |
gactatttctgtttaatttaagtatctagtttcatttcaattccatttatatttttccctaagtaattctctg |
42759433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 243; Significance: 1e-134; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 17 - 299
Target Start/End: Original strand, 1401926 - 1402208
Alignment:
| Q |
17 |
aaacctttagtttttcatttagtttgtatttgtatttcaaaattccccttgcttgaatagagcacaacattaattaagggctattgaactttcgttttga |
116 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| ||||||||||||||||||||||||| |
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| T |
1401926 |
aaacctttagttttccatttagtttgtatttgtatttcaaaattccccttgcttgaatacaacacaacattaatcaagggctattgaactttcgttttga |
1402025 |
T |
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| Q |
117 |
aaaccaacacatctatccatctgtaatcctctttttcccatgcatgttaacacaatcatgcaccttattccctctgtatatatatacatgcctgactgtt |
216 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
1402026 |
aaaccaacacatctatccatatgtaatcctctttttcccatgcatattaacacaatcatgcaccttattccctctgtatatatacacatgcctgactgtt |
1402125 |
T |
|
| Q |
217 |
tgcattttactcatctgtttctaaactttcctcaatcttagcagttaaacttggtgtgcatggagctgtgatttgctggagtt |
299 |
Q |
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| | |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1402126 |
tccgttttactcatctgtttctaaactttcttcaatcttagcagttaaacttggtgtgcatggagctgtgatttgctggagtt |
1402208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 374 - 445
Target Start/End: Original strand, 1402329 - 1402400
Alignment:
| Q |
374 |
gactatttctgtttaattaagtatccagtttcatttcaattccatttatatttttccctaagtaattctctg |
445 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
1402329 |
gactatatctgtttaattaagtatccagtttcatttcaattccatttatattttgccctaagtaattctctg |
1402400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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