View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10319_high_11 (Length: 448)

Name: NF10319_high_11
Description: NF10319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10319_high_11
NF10319_high_11
[»] chr1 (9 HSPs)
chr1 (1-448)||(50740504-50740969)
chr1 (253-335)||(19635604-19635686)
chr1 (259-341)||(25711071-25711154)
chr1 (253-337)||(36496829-36496914)
chr1 (247-309)||(32226437-32226499)
chr1 (366-415)||(50740925-50740974)
chr1 (344-376)||(36496939-36496971)
chr1 (341-392)||(19635713-19635764)
chr1 (254-309)||(31460634-31460689)
[»] chr5 (8 HSPs)
chr5 (247-341)||(8117159-8117253)
chr5 (257-310)||(13094317-13094370)
chr5 (341-415)||(30874834-30874908)
chr5 (253-339)||(28461421-28461508)
chr5 (247-309)||(1374452-1374514)
chr5 (257-303)||(13024140-13024186)
chr5 (256-308)||(30874926-30874978)
chr5 (341-376)||(8117273-8117308)
[»] chr6 (3 HSPs)
chr6 (253-341)||(15584930-15585019)
chr6 (260-341)||(31462716-31462799)
chr6 (260-309)||(2252424-2252473)
[»] chr8 (6 HSPs)
chr8 (258-341)||(13341350-13341434)
chr8 (247-340)||(27708193-27708287)
chr8 (253-341)||(25029358-25029445)
chr8 (253-310)||(28852614-28852671)
chr8 (261-341)||(42887606-42887685)
chr8 (253-309)||(14358498-14358554)
[»] chr7 (10 HSPs)
chr7 (247-341)||(2898167-2898262)
chr7 (256-338)||(13726139-13726222)
chr7 (253-309)||(22696753-22696809)
chr7 (251-310)||(19835103-19835161)
chr7 (253-301)||(19423679-19423727)
chr7 (253-309)||(48825915-48825971)
chr7 (253-308)||(46661261-46661316)
chr7 (254-299)||(29453041-29453086)
chr7 (247-298)||(21529579-21529630)
chr7 (341-415)||(22696635-22696709)
[»] chr4 (11 HSPs)
chr4 (247-310)||(51850711-51850774)
chr4 (253-341)||(52643128-52643217)
chr4 (255-341)||(34559661-34559746)
chr4 (257-341)||(3124954-3125039)
chr4 (254-307)||(11389142-11389195)
chr4 (254-309)||(49600106-49600161)
chr4 (341-376)||(51850661-51850696)
chr4 (254-309)||(54856766-54856821)
chr4 (260-341)||(8367712-8367794)
chr4 (255-309)||(12049571-12049625)
chr4 (359-415)||(11389045-11389101)
[»] scaffold0380 (1 HSPs)
scaffold0380 (247-320)||(10984-11056)
[»] chr3 (6 HSPs)
chr3 (254-310)||(30485150-30485206)
chr3 (359-415)||(30485058-30485114)
chr3 (262-341)||(47598572-47598651)
chr3 (253-309)||(3987295-3987351)
chr3 (251-311)||(31203319-31203379)
chr3 (404-448)||(30485063-30485107)
[»] scaffold0172 (1 HSPs)
scaffold0172 (253-335)||(31007-31090)
[»] chr2 (8 HSPs)
chr2 (257-341)||(12733056-12733140)
chr2 (359-415)||(12732962-12733018)
chr2 (253-309)||(35819020-35819075)
chr2 (253-312)||(45710079-45710138)
chr2 (253-309)||(17316379-17316435)
chr2 (251-309)||(7154971-7155029)
chr2 (257-341)||(33803745-33803830)
chr2 (257-341)||(33808227-33808312)


Alignment Details
Target: chr1 (Bit Score: 367; Significance: 0; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 1 - 448
Target Start/End: Original strand, 50740504 - 50740969
Alignment:
Q  1 tgaggagcagcagagatggtgaagggtgttcgatggtgatagcgataaagaaagataaagaaaattgcccagcagtggtagaggcggaatatggaagcag 100  Q
    |||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  50740504 tgagaagcagcagtgatggtgaagggtgttcgatggtgatagcgataaagaaagataaagaaaattgcccagcagtggtagaggcgaaatatggaagcag 50740603  T
Q  101 tgatggtggggacggaaatgacagagtgtgttgggcagaaacatggatgaagggccccgaggttgatggtggtagagggttttgtgcgaaagtgttgttg 200  Q
    |||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  50740604 tgatggtggggacggaaatgacagagtgcgttgggcagcaacatggatgaagggccccgaggttgatggtggtagagggttttgtgcgaaaatgttgttg 50740703  T
Q  201 gatagtagtcaatagctgcctatagcggtttgtctgctatagcggcatagcggccgctatttgattttagtaggaaatttccaaattgatcctattttta 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50740704 gatagtagtcaatagctgcctatagcggtttgtctgctatagcggcgtagcggccgctatttgattttagtaggaaatttccaaattgatcctattttta 50740803  T
Q  301 aaacctttttagggcattttagagatttcgtaaaccctaa------------------cttctcacatgtgccgcgaaacacactcttctatctcctaac 382  Q
    ||||||||||||||||||||||||||||||||||||||||                  |||||||||| ||||||||||||||||||||||||| |||||    
T  50740804 aaacctttttagggcattttagagatttcgtaaaccctaacatttttcaactttctctcttctcacatttgccgcgaaacacactcttctatcttctaac 50740903  T
Q  383 tggaaaacacgacctggggatctcttctatcttctaactggaaaacacgacctgcgaatctcttct 448  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  50740904 tggaaaacacgacctggggatctcttctatcttctaactggaaaacacgacctgcggatctcttct 50740969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 253 - 335
Target Start/End: Original strand, 19635604 - 19635686
Alignment:
Q  253 gccgctatttgattttagtaggaaatttccaaattgatcctatttttaaaacctttttagggcattttagagatttcgtaaac 335  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | |||||| |||||    
T  19635604 gccgctatttgattttagtaggaaatttccaaattgaccctatttttaaaacctttttagggcattttggggatttcttaaac 19635686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 259 - 341
Target Start/End: Complemental strand, 25711154 - 25711071
Alignment:
Q  259 atttgattttagtaggaaatttccaaattgatcctatttttaaaacct-ttttagggcattttagagatttcgtaaaccctaac 341  Q
    ||||||||||| ||||||||||| ||||||| |||||||||||||||| |||||||| |||||   ||||||||||||||||||    
T  25711154 atttgattttattaggaaatttcgaaattgaccctatttttaaaaccttttttagggtattttgaggatttcgtaaaccctaac 25711071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 253 - 337
Target Start/End: Original strand, 36496829 - 36496914
Alignment:
Q  253 gccgctatttgattttagtaggaaatttccaaattgatcctatttttaaaaccttt-ttagggcattttagagatttcgtaaaccc 337  Q
    |||| |||||||||||||||||||||||| ||||| | |||||||||||||| ||| |||| |||||||   ||||||||||||||    
T  36496829 gccggtatttgattttagtaggaaatttctaaattaaccctatttttaaaacatttattagagcattttgaggatttcgtaaaccc 36496914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 247 - 309
Target Start/End: Complemental strand, 32226499 - 32226437
Alignment:
Q  247 atagcggccgctatttgattttagtaggaaatttccaaattgatcctatttttaaaacctttt 309  Q
    ||||| ||||||||||||||||||| | ||||||||||||||| ||||||||| |||| ||||    
T  32226499 atagcagccgctatttgattttagttgaaaatttccaaattgaccctatttttgaaacatttt 32226437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 366 - 415
Target Start/End: Original strand, 50740925 - 50740974
Alignment:
Q  366 ctcttctatctcctaactggaaaacacgacctggggatctcttctatctt 415  Q
    ||||||||||| ||||||||||||||||||||| ||||||||||| ||||    
T  50740925 ctcttctatcttctaactggaaaacacgacctgcggatctcttctctctt 50740974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 344 - 376
Target Start/End: Original strand, 36496939 - 36496971
Alignment:
Q  344 ctcacatgtgccgcgaaacacactcttctatct 376  Q
    |||||||||||||||||||||||||||||||||    
T  36496939 ctcacatgtgccgcgaaacacactcttctatct 36496971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 341 - 392
Target Start/End: Original strand, 19635713 - 19635764
Alignment:
Q  341 cttctcacatgtgccgcgaaacacactcttctatctcctaactggaaaacac 392  Q
    |||||||  ||||||||||||||||||||||||||| | || ||||||||||    
T  19635713 cttctcagctgtgccgcgaaacacactcttctatcttcaaattggaaaacac 19635764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 254 - 309
Target Start/End: Original strand, 31460634 - 31460689
Alignment:
Q  254 ccgctatttgattttagtaggaaatttccaaattgatcctatttttaaaacctttt 309  Q
    |||||||||||||||||| | ||||||||||| | | | |||||||||||||||||    
T  31460634 ccgctatttgattttagttgaaaatttccaaactaaacttatttttaaaacctttt 31460689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 60; Significance: 2e-25; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 247 - 341
Target Start/End: Original strand, 8117159 - 8117253
Alignment:
Q  247 atagcggccgctatttgattttagtaggaaatttccaaattgatcctatttttaaaacc-tttttagggcattttagagatttcgtaaaccctaac 341  Q
    ||||| |||||||||| |||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||   ||||||||||||||||||    
T  8117159 atagcagccgctattt-attttagtaggaaatttccaaattgaccctatttttaaaaccttttttagggcattttgaggatttcgtaaaccctaac 8117253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 257 - 310
Target Start/End: Complemental strand, 13094370 - 13094317
Alignment:
Q  257 ctatttgattttagtaggaaatttccaaattgatcctatttttaaaaccttttt 310  Q
    ||||||||||||| ||||||||||||||||||| | ||||||||||||||||||    
T  13094370 ctatttgattttactaggaaatttccaaattgaccatatttttaaaaccttttt 13094317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 341 - 415
Target Start/End: Complemental strand, 30874908 - 30874834
Alignment:
Q  341 cttctcacatgtgccgcgaaacacactcttctatctcctaactggaaaacacgacctggggatctcttctatctt 415  Q
    |||||||| | |||||| |||||||||||||||||| |   |||||||||||||||||||||| |||||| ||||    
T  30874908 cttctcacctatgccgcaaaacacactcttctatcttccggctggaaaacacgacctggggatatcttctctctt 30874834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 253 - 339
Target Start/End: Complemental strand, 28461508 - 28461421
Alignment:
Q  253 gccgctatttgattttagtaggaaatttccaaattgatcctatttttaaaac-ctttttagggcattttagagatttcgtaaacccta 339  Q
    ||||||||||||||||||||||||||||  |||||||  || ||||||||||  |||||| ||||||||   ||||| ||||||||||    
T  28461508 gccgctatttgattttagtaggaaatttttaaattgactctgtttttaaaactttttttaaggcattttgaggattttgtaaacccta 28461421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 247 - 309
Target Start/End: Original strand, 1374452 - 1374514
Alignment:
Q  247 atagcggccgctatttgattttagtaggaaatttccaaattgatcctatttttaaaacctttt 309  Q
    ||||||||||||||||||||||||| | |||||| ||||||||  ||||||| ||||| ||||    
T  1374452 atagcggccgctatttgattttagttgaaaattttcaaattgacactattttaaaaacatttt 1374514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 257 - 303
Target Start/End: Complemental strand, 13024186 - 13024140
Alignment:
Q  257 ctatttgattttagtaggaaatttccaaattgatcctatttttaaaa 303  Q
    ||||||||||||| ||||||||||||||||||| | |||||||||||    
T  13024186 ctatttgattttactaggaaatttccaaattgaccatatttttaaaa 13024140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 256 - 308
Target Start/End: Complemental strand, 30874978 - 30874926
Alignment:
Q  256 gctatttgattttagtaggaaatttccaaattgatcctatttttaaaaccttt 308  Q
    |||||||||||||||||||||||||  ||||| | | ||||||||||||||||    
T  30874978 gctatttgattttagtaggaaatttttaaattcaccatatttttaaaaccttt 30874926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 341 - 376
Target Start/End: Original strand, 8117273 - 8117308
Alignment:
Q  341 cttctcacatgtgccgcgaaacacactcttctatct 376  Q
    |||||||| |||||||||||||||||||||||||||    
T  8117273 cttctcacctgtgccgcgaaacacactcttctatct 8117308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 58; Significance: 3e-24; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 253 - 341
Target Start/End: Complemental strand, 15585019 - 15584930
Alignment:
Q  253 gccgctatttgattttagtaggaaatttccaaattgatcctattttt-aaaacctttttagggcattttagagatttcgtaaaccctaac 341  Q
    ||||| |||||||||||||||||||||| |||||||| ||||||||| ||||| ||||||||||||||||  ||||||||||||||||||    
T  15585019 gccgccatttgattttagtaggaaattttcaaattgaccctatttttaaaaacttttttagggcattttatggatttcgtaaaccctaac 15584930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 260 - 341
Target Start/End: Complemental strand, 31462799 - 31462716
Alignment:
Q  260 tttgattttagtaggaaatttccaaattgatcctatttttaaaacct--ttttagggcattttagagatttcgtaaaccctaac 341  Q
    |||||||||||||||||||||| ||||||| ||||||||||||||||  |||||||| |||||   ||||||||||||||||||    
T  31462799 tttgattttagtaggaaatttctaaattgagcctatttttaaaacctttttttagggtattttgaggatttcgtaaaccctaac 31462716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 260 - 309
Target Start/End: Complemental strand, 2252473 - 2252424
Alignment:
Q  260 tttgattttagtaggaaatttccaaattgatcctatttttaaaacctttt 309  Q
    |||||||||||| | ||||||||||||||| | |||||||||||| ||||    
T  2252473 tttgattttagttgaaaatttccaaattgaccatatttttaaaacatttt 2252424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 1e-23; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 258 - 341
Target Start/End: Original strand, 13341350 - 13341434
Alignment:
Q  258 tatttgattttagtaggaaatttccaaattgatcctatttttaaaaccttttt-agggcattttagagatttcgtaaaccctaac 341  Q
    |||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||| | ||||| ||||||||||||    
T  13341350 tatttgattttagtaggaaatttccaaattgaccctattttgaaaacctttttgagggcattttggggatttggtaaaccctaac 13341434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 247 - 340
Target Start/End: Complemental strand, 27708287 - 27708193
Alignment:
Q  247 atagcggccgctatttgattttagtaggaaatttccaaattgatcctatttttaaaacct-ttttagggcattttagagatttcgtaaaccctaa 340  Q
    |||||||||||| ||||||||||||  |||||||||||||||| |||||||||||||||| ||||||||||||||   ||||||| |||||||||    
T  27708287 atagcggccgctgtttgattttagtccgaaatttccaaattgaccctatttttaaaaccttttttagggcattttgaggatttcgcaaaccctaa 27708193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 253 - 341
Target Start/End: Original strand, 25029358 - 25029445
Alignment:
Q  253 gccgctatttgattttagtaggaaatttccaaattgatcctatttttaaaacctttttagggcattttagagatttcgtaaaccctaac 341  Q
    ||||||||||||||| || ||||| |||||||||||| ||||||||||||||||||||||||||||||   ||||| ||||||||||||    
T  25029358 gccgctatttgatttcagaaggaa-tttccaaattgaccctatttttaaaacctttttagggcattttgaggattttgtaaaccctaac 25029445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 253 - 310
Target Start/End: Original strand, 28852614 - 28852671
Alignment:
Q  253 gccgctatttgattttagtaggaaatttccaaattgatcctatttttaaaaccttttt 310  Q
    |||||||||||||||||||| ||| |||  ||||| | ||||||||||||||||||||    
T  28852614 gccgctatttgattttagtaagaattttttaaatttaccctatttttaaaaccttttt 28852671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 261 - 341
Target Start/End: Original strand, 42887606 - 42887685
Alignment:
Q  261 ttgattttagtaggaaatttccaaattgatcctatttttaaaacctttttagggcattttagagatttcgtaaaccctaac 341  Q
    |||||| ||| ||||||||||||||||||  | |||||||||| |  || ||| |||||| ||||||||||||||||||||    
T  42887606 ttgattatagcaggaaatttccaaattgactcaatttttaaaatc-attgaggacattttggagatttcgtaaaccctaac 42887685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 253 - 309
Target Start/End: Original strand, 14358498 - 14358554
Alignment:
Q  253 gccgctatttgattttagtaggaaatttccaaattgatcctatttttaaaacctttt 309  Q
    ||||||||||||||||||| | |||||| |||||| |  ||||||||||||| ||||    
T  14358498 gccgctatttgattttagttgaaaattttcaaatttacactatttttaaaacatttt 14358554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 56; Significance: 5e-23; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 247 - 341
Target Start/End: Original strand, 2898167 - 2898262
Alignment:
Q  247 atagcggccgctatttgattttagtaggaaatttccaaattgatcctatttttaaaaccttttt-agggcattttagagatttcgtaaaccctaac 341  Q
    ||||||||||||||||||||||||||| ||||||| ||||||| ||||||| |||||||||||| |||||||||| | ||||  ||||||||||||    
T  2898167 atagcggccgctatttgattttagtagcaaatttctaaattgaccctatttgtaaaacctttttgagggcattttggggattctgtaaaccctaac 2898262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 256 - 338
Target Start/End: Original strand, 13726139 - 13726222
Alignment:
Q  256 gctatttgattttagtaggaaatttccaaattgatcctatttttaaaacc-tttttagggcattttagagatttcgtaaaccct 338  Q
    ||||||||||||||||||||||||| |||||||| |||||||| |||||| |||||||||||||||   |||||||||||||||    
T  13726139 gctatttgattttagtaggaaattttcaaattgaccctattttaaaaaccttttttagggcattttgaggatttcgtaaaccct 13726222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 253 - 309
Target Start/End: Complemental strand, 22696809 - 22696753
Alignment:
Q  253 gccgctatttgattttagtaggaaatttccaaattgatcctatttttaaaacctttt 309  Q
    ||||||||||||||||||||||||||||||||||| | |||||||||||||||||||    
T  22696809 gccgctatttgattttagtaggaaatttccaaatttaccctatttttaaaacctttt 22696753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 251 - 310
Target Start/End: Original strand, 19835103 - 19835161
Alignment:
Q  251 cggccgctatttgattttagtaggaaatttccaaattgatcctatttttaaaaccttttt 310  Q
    ||||| |||||||||||| ||||||||||||||||||||  |||||||||||||||||||    
T  19835103 cggccactatttgatttt-gtaggaaatttccaaattgactctatttttaaaaccttttt 19835161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 253 - 301
Target Start/End: Original strand, 19423679 - 19423727
Alignment:
Q  253 gccgctatttgattttagtaggaaatttccaaattgatcctatttttaa 301  Q
    |||||||||||||||||||||||||||| || ||||| |||||||||||    
T  19423679 gccgctatttgattttagtaggaaattttcatattgaccctatttttaa 19423727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 253 - 309
Target Start/End: Original strand, 48825915 - 48825971
Alignment:
Q  253 gccgctatttgattttagtaggaaatttccaaattgatcctatttttaaaacctttt 309  Q
    ||||||||||||||||||| | |||||| |||||||| |||||||||||||| ||||    
T  48825915 gccgctatttgattttagttgaaaattttcaaattgaccctatttttaaaacatttt 48825971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 253 - 308
Target Start/End: Complemental strand, 46661316 - 46661261
Alignment:
Q  253 gccgctatttgattttagtaggaaatttccaaattgatcctatttttaaaaccttt 308  Q
    |||| |||||||||||| ||| |||||| |||||||||| ||||||||||||||||    
T  46661316 gccgttatttgattttaatagaaaattttcaaattgatcttatttttaaaaccttt 46661261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 254 - 299
Target Start/End: Complemental strand, 29453086 - 29453041
Alignment:
Q  254 ccgctatttgattttagtaggaaatttccaaattgatcctattttt 299  Q
    |||||||||||||||| |||||||||| |||||||||||| |||||    
T  29453086 ccgctatttgattttaataggaaattttcaaattgatccttttttt 29453041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 247 - 298
Target Start/End: Original strand, 21529579 - 21529630
Alignment:
Q  247 atagcggccgctatttgattttagtaggaaatttccaaattgatcctatttt 298  Q
    ||||||||||||||||||||||||| | || ||| |||||||| ||||||||    
T  21529579 atagcggccgctatttgattttagttgaaatttttcaaattgaccctatttt 21529630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 341 - 415
Target Start/End: Complemental strand, 22696709 - 22696635
Alignment:
Q  341 cttctcacatgtgccgcgaaacacactcttctatctcctaactggaaaacacgacctggggatctcttctatctt 415  Q
    |||||||| || | ||||||||||| ||||||||||   ||||||||||||| || ||||||| |||||| ||||    
T  22696709 cttctcacctgcgtcgcgaaacacagtcttctatctttcaactggaaaacacaacatggggatatcttctctctt 22696635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 5e-23; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 247 - 310
Target Start/End: Complemental strand, 51850774 - 51850711
Alignment:
Q  247 atagcggccgctatttgattttagtaggaaatttccaaattgatcctatttttaaaaccttttt 310  Q
    ||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||    
T  51850774 atagcggccgctatttgattttagtaggaaatttccaaattgaccatatttttaaaaccttttt 51850711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 253 - 341
Target Start/End: Original strand, 52643128 - 52643217
Alignment:
Q  253 gccgctatttgattttagtaggaaatttccaaattgatcctatttttaaaaccttttt-agggcattttagagatttcgtaaaccctaac 341  Q
    |||||| ||||||||||| |||||||||||||||||| |||||||||||||||||||| || ||||||| | ||||| ||||||||||||    
T  52643128 gccgctgtttgattttagaaggaaatttccaaattgaccctatttttaaaacctttttgagagcattttggggattttgtaaaccctaac 52643217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 255 - 341
Target Start/End: Complemental strand, 34559746 - 34559661
Alignment:
Q  255 cgctatttgattttagtaggaaatttccaaattgatcctatttttaaaacctttttagggcattttagagatttcgtaaaccctaac 341  Q
    ||||||||||||||||||| |||||| |||||||| | || |||| || ||||||||| ||||||| ||||||| ||||||||||||    
T  34559746 cgctatttgattttagtagaaaattttcaaattgaccgtaatttttaa-cctttttagagcattttggagattttgtaaaccctaac 34559661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 257 - 341
Target Start/End: Original strand, 3124954 - 3125039
Alignment:
Q  257 ctatttgattttagtaggaaatttccaaattgatcctatttttaaaa-cctttttagggcattttagagatttcgtaaaccctaac 341  Q
    |||||||||||||| ||||||||| ||||||||  |||||||||||| | |||||||||||||||   || |||||||||||||||    
T  3124954 ctatttgattttagcaggaaattttcaaattgacactatttttaaaatcttttttagggcattttgaggaattcgtaaaccctaac 3125039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 254 - 307
Target Start/End: Complemental strand, 11389195 - 11389142
Alignment:
Q  254 ccgctatttgattttagtaggaaatttccaaattgatcctatttttaaaacctt 307  Q
    |||||||||||||||| |||||| |||| ||||||| | |||||||||||||||    
T  11389195 ccgctatttgattttaataggaattttctaaattgaccatatttttaaaacctt 11389142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 254 - 309
Target Start/End: Original strand, 49600106 - 49600161
Alignment:
Q  254 ccgctatttgattttagtaggaaatttccaaattgatcctatttttaaaacctttt 309  Q
    |||||||||||||||||| | |||||| ||||||||  ||||||||||||| ||||    
T  49600106 ccgctatttgattttagtcgaaaattttcaaattgacactatttttaaaacatttt 49600161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 341 - 376
Target Start/End: Complemental strand, 51850696 - 51850661
Alignment:
Q  341 cttctcacatgtgccgcgaaacacactcttctatct 376  Q
    |||||||| |||||||||||||||||||||||||||    
T  51850696 cttctcacctgtgccgcgaaacacactcttctatct 51850661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 254 - 309
Target Start/End: Original strand, 54856766 - 54856821
Alignment:
Q  254 ccgctatttgattttagtaggaaatttccaaattgatcctatttttaaaacctttt 309  Q
    |||||||||||||||||| | |||||| ||||||||  ||||||||||||| ||||    
T  54856766 ccgctatttgattttagttgaaaattttcaaattgacactatttttaaaacatttt 54856821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 260 - 341
Target Start/End: Original strand, 8367712 - 8367794
Alignment:
Q  260 tttgattttagtaggaaatttccaaattgatcctatttttaaaaccttttt-agggcattttagagatttcgtaaaccctaac 341  Q
    ||||||| |||||| || |||| ||||||| | |||||||||| ||||||| |||| ||||| | ||||| ||||||||||||    
T  8367712 tttgattatagtagaaattttctaaattgaccatatttttaaatcctttttcagggtattttggggattttgtaaaccctaac 8367794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 255 - 309
Target Start/End: Original strand, 12049571 - 12049625
Alignment:
Q  255 cgctatttgattttagtaggaaatttccaaattgatcctatttttaaaacctttt 309  Q
    ||||||||||||||||| | ||||||||||||||| | |||||||| ||| ||||    
T  12049571 cgctatttgattttagttgaaaatttccaaattgaccatatttttagaacatttt 12049625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 359 - 415
Target Start/End: Complemental strand, 11389101 - 11389045
Alignment:
Q  359 aaacacactcttctatctcctaactggaaaacacgacctggggatctcttctatctt 415  Q
    |||||||||||||||||| | ||||||||||    ||||||||||||||||| ||||    
T  11389101 aaacacactcttctatcttccaactggaaaatgtaacctggggatctcttctctctt 11389045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0380 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: scaffold0380
Description:

Target: scaffold0380; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 247 - 320
Target Start/End: Complemental strand, 11056 - 10984
Alignment:
Q  247 atagcggccgctatttgattttagtaggaaatttccaaattgatcctatttttaaaacctttttagggcatttt 320  Q
    |||||||||||||||| ||||||||||||||||||||| |||| ||||||||||||||| ||||||||||||||    
T  11056 atagcggccgctatttaattttagtaggaaatttccaagttgaccctatttttaaaacc-ttttagggcatttt 10984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 7e-19; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 254 - 310
Target Start/End: Complemental strand, 30485206 - 30485150
Alignment:
Q  254 ccgctatttgattttagtaggaaatttccaaattgatcctatttttaaaaccttttt 310  Q
    |||||||||||||||||||||||||||||||||||| | ||||||||||||||||||    
T  30485206 ccgctatttgattttagtaggaaatttccaaattgaccatatttttaaaaccttttt 30485150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 359 - 415
Target Start/End: Complemental strand, 30485114 - 30485058
Alignment:
Q  359 aaacacactcttctatctcctaactggaaaacacgacctggggatctcttctatctt 415  Q
    |||||||||||||||||| | |||||||||||| |||||||||||||||||| ||||    
T  30485114 aaacacactcttctatcttccaactggaaaacatgacctggggatctcttctctctt 30485058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 262 - 341
Target Start/End: Original strand, 47598572 - 47598651
Alignment:
Q  262 tgattttagtaggaaatttccaaattgatcctatttttaaaacctttttagggcattt-tagagatttcgtaaaccctaac 341  Q
    |||||||| ||||||||||  ||||| | |||||||| |||| ||||||||||||||| |||| |||||||||||||||||    
T  47598572 tgattttaataggaaatttttaaattaaccctattttaaaaatctttttagggcatttataga-atttcgtaaaccctaac 47598651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 253 - 309
Target Start/End: Original strand, 3987295 - 3987351
Alignment:
Q  253 gccgctatttgattttagtaggaaatttccaaattgatcctatttttaaaacctttt 309  Q
    ||||||||||||||||||| | ||||||||||||||| | |||||| ||||| ||||    
T  3987295 gccgctatttgattttagttgaaaatttccaaattgaccatattttaaaaacatttt 3987351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 251 - 311
Target Start/End: Original strand, 31203319 - 31203379
Alignment:
Q  251 cggccgctatttgattttagtaggaaatttccaaattgatcctatttttaaaaccttttta 311  Q
    |||||||||| |||||||| ||||||||||  |||||||  | ||||||||||||||||||    
T  31203319 cggccgctatatgattttaataggaaatttttaaattgactcaatttttaaaaccttttta 31203379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 404 - 448
Target Start/End: Complemental strand, 30485107 - 30485063
Alignment:
Q  404 ctcttctatcttctaactggaaaacacgacctgcgaatctcttct 448  Q
    ||||||||||||| |||||||||||| |||||| | |||||||||    
T  30485107 ctcttctatcttccaactggaaaacatgacctggggatctcttct 30485063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0172 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0172
Description:

Target: scaffold0172; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 253 - 335
Target Start/End: Complemental strand, 31090 - 31007
Alignment:
Q  253 gccgctatttgattttagtaggaaatttccaaattgatcctatttttaaaac-ctttttagggcattttagagatttcgtaaac 335  Q
    |||| ||||||||||||||||||||||| |||||||| | ||||||||||||  |||||||| ||||||   ||||||||||||    
T  31090 gccgttatttgattttagtaggaaattttcaaattgaccgtatttttaaaacattttttaggacattttgaggatttcgtaaac 31007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 257 - 341
Target Start/End: Complemental strand, 12733140 - 12733056
Alignment:
Q  257 ctatttgattttagtaggaaatttccaaattgatcctatttttaaaaccttttt-agggcattttagagatttcgtaaaccctaac 341  Q
    |||||||||||||||||||||||| ||||  |  | |||||||||||||||||| |||||||||| | ||||||||||| ||||||    
T  12733140 ctatttgattttagtaggaaattttcaaacggc-catatttttaaaacctttttgagggcattttggggatttcgtaaatcctaac 12733056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 359 - 415
Target Start/End: Complemental strand, 12733018 - 12732962
Alignment:
Q  359 aaacacactcttctatctcctaactggaaaacacgacctggggatctcttctatctt 415  Q
    |||||||||||||||||| | |||||| ||||| |||||||||||||||||| ||||    
T  12733018 aaacacactcttctatcttccaactggtaaacaagacctggggatctcttctctctt 12732962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 253 - 309
Target Start/End: Original strand, 35819020 - 35819075
Alignment:
Q  253 gccgctatttgattttagtaggaaatttccaaattgatcctatttttaaaacctttt 309  Q
    ||||||||||||||||||| ||||||||||||||| | |||| ||||||||||||||    
T  35819020 gccgctatttgattttagttggaaatttccaaattaagccta-ttttaaaacctttt 35819075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 253 - 312
Target Start/End: Complemental strand, 45710138 - 45710079
Alignment:
Q  253 gccgctatttgattttagtaggaaatttccaaattgatcctatttttaaaacctttttag 312  Q
    |||| ||||||||||| ||||||||||| |||||||| |||||||||||| | |||||||    
T  45710138 gccgttatttgattttggtaggaaattttcaaattgaccctatttttaaatcatttttag 45710079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 253 - 309
Target Start/End: Complemental strand, 17316435 - 17316379
Alignment:
Q  253 gccgctatttgattttagtaggaaatttccaaattgatcctatttttaaaacctttt 309  Q
    ||||||||||||||||||| | |||||| ||||||||  ||||||||||||| ||||    
T  17316435 gccgctatttgattttagttgaaaattttcaaattgacactatttttaaaacatttt 17316379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 251 - 309
Target Start/End: Complemental strand, 7155029 - 7154971
Alignment:
Q  251 cggccgctatttgattttagtaggaaatttccaaattgatcctatttttaaaacctttt 309  Q
    ||||||||||||||||||||| | |||||| || |||||  ||||||||||||| ||||    
T  7155029 cggccgctatttgattttagttgaaaattttcatattgacactatttttaaaacatttt 7154971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 257 - 341
Target Start/End: Complemental strand, 33803830 - 33803745
Alignment:
Q  257 ctatttgattttagtaggaaatttccaaattgatcctatttttaaaaccttttt-agggcattttagagatttcgtaaaccctaac 341  Q
    |||||| ||||||||| |||| ||| ||||| | | |||||| |||| |||||| |||||||||| | | ||||||||||||||||    
T  33803830 ctatttcattttagtatgaaaattctaaattaaccatattttaaaaatcttttttagggcattttgggggtttcgtaaaccctaac 33803745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 257 - 341
Target Start/End: Complemental strand, 33808312 - 33808227
Alignment:
Q  257 ctatttgattttagtaggaaatttccaaattgatcctatttttaaaaccttttt-agggcattttagagatttcgtaaaccctaac 341  Q
    |||||| ||||||||| |||| ||| ||||| | | |||||| |||| |||||| |||||||||| | | ||||||||||||||||    
T  33808312 ctatttcattttagtatgaaaattctaaattaaccatattttaaaaatcttttttagggcattttgggggtttcgtaaaccctaac 33808227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University