View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10319_high_16 (Length: 339)

Name: NF10319_high_16
Description: NF10319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10319_high_16
NF10319_high_16
[»] chr7 (19 HSPs)
chr7 (6-290)||(46654367-46654652)
chr7 (291-336)||(7362509-7362554)
chr7 (291-336)||(21151093-21151138)
chr7 (291-336)||(45260516-45260561)
chr7 (291-339)||(9559143-9559191)
chr7 (291-336)||(4888408-4888453)
chr7 (291-336)||(16366459-16366504)
chr7 (291-336)||(12139269-12139312)
chr7 (291-336)||(18198197-18198242)
chr7 (211-268)||(46653907-46653964)
chr7 (291-336)||(47226163-47226207)
chr7 (292-336)||(25084818-25084862)
chr7 (293-333)||(32915903-32915943)
chr7 (291-336)||(44647906-44647948)
chr7 (292-334)||(29630991-29631033)
chr7 (293-334)||(6882149-6882190)
chr7 (207-264)||(17037968-17038025)
chr7 (293-334)||(19889115-19889156)
chr7 (293-333)||(30588489-30588529)
[»] scaffold0429 (2 HSPs)
scaffold0429 (6-290)||(3981-4266)
scaffold0429 (211-291)||(3497-3578)
[»] chr1 (15 HSPs)
chr1 (6-291)||(48167201-48167487)
chr1 (291-336)||(12380999-12381044)
chr1 (291-336)||(12385066-12385111)
chr1 (291-336)||(45977963-45978008)
chr1 (291-339)||(7841799-7841847)
chr1 (211-289)||(48166718-48166797)
chr1 (291-336)||(12151708-12151753)
chr1 (291-336)||(50484327-50484372)
chr1 (291-336)||(23862045-23862090)
chr1 (291-336)||(50294152-50294197)
chr1 (196-264)||(34153757-34153825)
chr1 (42-76)||(32804707-32804741)
chr1 (291-336)||(40328217-40328263)
chr1 (292-334)||(40988658-40988700)
chr1 (12-57)||(30322514-30322559)
[»] chr3 (15 HSPs)
chr3 (6-131)||(1253200-1253328)
chr3 (291-336)||(27033592-27033637)
chr3 (291-336)||(43720036-43720081)
chr3 (291-334)||(40851716-40851759)
chr3 (291-336)||(19830521-19830566)
chr3 (291-336)||(34373674-34373719)
chr3 (291-336)||(34373772-34373817)
chr3 (292-336)||(2229924-2229968)
chr3 (292-334)||(550906-550948)
chr3 (298-333)||(32577476-32577511)
chr3 (293-334)||(3009192-3009233)
chr3 (291-336)||(12402906-12402951)
chr3 (293-334)||(31523749-31523790)
chr3 (293-334)||(42613033-42613074)
chr3 (291-336)||(46167334-46167379)
[»] chr8 (11 HSPs)
chr8 (292-339)||(5033044-5033091)
chr8 (291-336)||(30426758-30426803)
chr8 (291-336)||(36991297-36991342)
chr8 (292-336)||(28318992-28319036)
chr8 (291-336)||(41511203-41511248)
chr8 (291-336)||(28069660-28069705)
chr8 (292-336)||(10652709-10652752)
chr8 (291-330)||(40695336-40695375)
chr8 (293-330)||(21492730-21492767)
chr8 (293-334)||(37966533-37966574)
chr8 (292-336)||(10672602-10672646)
[»] chr6 (11 HSPs)
chr6 (292-339)||(4804386-4804433)
chr6 (292-339)||(32737812-32737859)
chr6 (291-336)||(7162025-7162070)
chr6 (291-336)||(1249235-1249280)
chr6 (291-336)||(17944103-17944148)
chr6 (291-336)||(29698104-29698149)
chr6 (291-330)||(21159458-21159497)
chr6 (291-334)||(30460763-30460806)
chr6 (292-332)||(12412582-12412622)
chr6 (293-336)||(27826479-27826522)
chr6 (291-332)||(17398783-17398824)
[»] chr5 (17 HSPs)
chr5 (292-339)||(4895825-4895872)
chr5 (292-339)||(32129707-32129754)
chr5 (291-336)||(13032060-13032105)
chr5 (291-336)||(39902356-39902401)
chr5 (291-336)||(11775733-11775778)
chr5 (291-336)||(35660698-35660743)
chr5 (291-336)||(37266672-37266717)
chr5 (291-333)||(43309062-43309104)
chr5 (294-336)||(14349745-14349787)
chr5 (291-328)||(1475727-1475764)
chr5 (292-336)||(4592742-4592785)
chr5 (292-334)||(23253736-23253778)
chr5 (291-333)||(40753251-40753293)
chr5 (291-336)||(8441060-8441105)
chr5 (291-336)||(18625510-18625555)
chr5 (291-327)||(30355218-30355254)
chr5 (294-334)||(38283828-38283868)
[»] chr4 (22 HSPs)
chr4 (292-339)||(5763252-5763299)
chr4 (289-336)||(33247215-33247262)
chr4 (291-336)||(3952259-3952304)
chr4 (291-336)||(12153112-12153157)
chr4 (291-336)||(12241497-12241542)
chr4 (291-339)||(23610580-23610628)
chr4 (292-339)||(56558217-56558264)
chr4 (291-336)||(5416556-5416601)
chr4 (291-336)||(17080729-17080774)
chr4 (291-336)||(34778362-34778407)
chr4 (291-336)||(52018724-52018769)
chr4 (292-336)||(12312593-12312637)
chr4 (292-336)||(19902008-19902052)
chr4 (291-335)||(38079809-38079853)
chr4 (291-336)||(18207129-18207174)
chr4 (291-336)||(39862458-39862503)
chr4 (292-336)||(47922165-47922209)
chr4 (292-327)||(33262642-33262677)
chr4 (298-333)||(25442271-25442306)
chr4 (291-336)||(24073558-24073603)
chr4 (293-334)||(37002332-37002373)
chr4 (293-334)||(56269158-56269199)
[»] scaffold0012 (1 HSPs)
scaffold0012 (291-336)||(208004-208049)
[»] chr2 (14 HSPs)
chr2 (291-336)||(28564832-28564877)
chr2 (291-336)||(35316766-35316811)
chr2 (291-335)||(13238623-13238667)
chr2 (294-336)||(41983431-41983473)
chr2 (291-336)||(39465716-39465761)
chr2 (291-336)||(45625151-45625196)
chr2 (292-336)||(10877643-10877686)
chr2 (295-335)||(42075456-42075496)
chr2 (293-334)||(374946-374987)
chr2 (291-332)||(2061322-2061363)
chr2 (293-334)||(3354844-3354885)
chr2 (293-334)||(8988809-8988850)
chr2 (293-334)||(29188606-29188647)
chr2 (291-335)||(23259576-23259620)
[»] scaffold0456 (1 HSPs)
scaffold0456 (291-332)||(13641-13682)
[»] scaffold0006 (1 HSPs)
scaffold0006 (291-336)||(73929-73974)
[»] scaffold0250 (1 HSPs)
scaffold0250 (291-336)||(7088-7133)
[»] scaffold0035 (1 HSPs)
scaffold0035 (291-336)||(16486-16531)
[»] scaffold0009 (1 HSPs)
scaffold0009 (291-326)||(6524-6559)
[»] scaffold0008 (1 HSPs)
scaffold0008 (291-336)||(9287-9332)


Alignment Details
Target: chr7 (Bit Score: 221; Significance: 1e-121; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 6 - 290
Target Start/End: Original strand, 46654367 - 46654652
Alignment:
Q  6 aagcagagatggtgagggattgtagttttcatgaacaacaaagacacagtggtggtggatcacggcggagtgattttcattcatggtggcgcttaagatg 105  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||    
T  46654367 aagcagagatggtgagggattgtagttttcatgaacaacaaagacacagtggtggtggatcacggcagagtgattttcattcatggtggcgcttaagctg 46654466  T
Q  106 cgcaacggaagccgaaaacgtgggagggagaagaagaagggtgtacgattgagaaaaggggaacaatgatatgtttgttttaannnnnnnaatctcggac 205  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||       ||||||| ||    
T  46654467 cgcaacggaagccgaaaatgtgggagggagaagaagaagggtgtacgattgagaaaaggggaacaatgaaatgtttgttttaatttttttaatctcgaac 46654566  T
Q  206 gttgattttttacatgccacttgtcacacatccaaccaagggaatgggaaactggaggaatt-agtattggagcatatctggactc 290  Q
    |||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||| |||| ||||||| ||||||||||    
T  46654567 gttgattttttacatgccacttatcacacatccaaccaagggaatggaaaactggaggaattaagtactggagcagatctggactc 46654652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 291 - 336
Target Start/End: Complemental strand, 7362554 - 7362509
Alignment:
Q  291 gattttatgtgtctttatctctccaaattgaagaaatggagaaaca 336  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  7362554 gattttatgtgtctttatctctccaaattgaagaaatggagaaaca 7362509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 291 - 336
Target Start/End: Complemental strand, 21151138 - 21151093
Alignment:
Q  291 gattttatgtgtctttatctctccaaattgaagaaatggagaaaca 336  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  21151138 gattttatgtgtctttatctctccaaattgaagaaatggagaaaca 21151093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 291 - 336
Target Start/End: Original strand, 45260516 - 45260561
Alignment:
Q  291 gattttatgtgtctttatctctccaaattgaagaaatggagaaaca 336  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  45260516 gattttatgtgtctttatctctccaaattgaagaaatggagaaaca 45260561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 291 - 339
Target Start/End: Original strand, 9559143 - 9559191
Alignment:
Q  291 gattttatgtgtctttatctctccaaattgaagaaatggagaaacatat 339  Q
    |||||||||||||||||||||||||||| |||||||| |||||||||||    
T  9559143 gattttatgtgtctttatctctccaaatggaagaaatcgagaaacatat 9559191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 291 - 336
Target Start/End: Complemental strand, 4888453 - 4888408
Alignment:
Q  291 gattttatgtgtctttatctctccaaattgaagaaatggagaaaca 336  Q
    |||||||||||||||||||||||||||| |||||||| ||||||||    
T  4888453 gattttatgtgtctttatctctccaaatggaagaaattgagaaaca 4888408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 291 - 336
Target Start/End: Complemental strand, 16366504 - 16366459
Alignment:
Q  291 gattttatgtgtctttatctctccaaattgaagaaatggagaaaca 336  Q
    ||||||| |||| |||||||||||||||||||||||||||||||||    
T  16366504 gattttacgtgtttttatctctccaaattgaagaaatggagaaaca 16366459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 291 - 336
Target Start/End: Complemental strand, 12139312 - 12139269
Alignment:
Q  291 gattttatgtgtctttatctctccaaattgaagaaatggagaaaca 336  Q
    ||||||||||||  ||||||||||||||||||||||||||||||||    
T  12139312 gattttatgtgt--ttatctctccaaattgaagaaatggagaaaca 12139269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 291 - 336
Target Start/End: Complemental strand, 18198242 - 18198197
Alignment:
Q  291 gattttatgtgtctttatctctccaaattgaagaaatggagaaaca 336  Q
    |||||||||||  ||||||||| |||||||||||||||||||||||    
T  18198242 gattttatgtgattttatctctacaaattgaagaaatggagaaaca 18198197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 211 - 268
Target Start/End: Complemental strand, 46653964 - 46653907
Alignment:
Q  211 ttttttacatgccacttgtcacacatccaaccaagggaatgggaaactggaggaatta 268  Q
    ||||||||||||||||||||| ||||||||  | |||| |||||||| ||||||||||    
T  46653964 ttttttacatgccacttgtcatacatccaagtaggggactgggaaacaggaggaatta 46653907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 291 - 336
Target Start/End: Original strand, 47226163 - 47226207
Alignment:
Q  291 gattttatgtgtctttatctctccaaattgaagaaatggagaaaca 336  Q
    |||||||||||| |||||||||||||||||||||||| ||||||||    
T  47226163 gattttatgtgt-tttatctctccaaattgaagaaatagagaaaca 47226207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 292 - 336
Target Start/End: Original strand, 25084818 - 25084862
Alignment:
Q  292 attttatgtgtctttatctctccaaattgaagaaatggagaaaca 336  Q
    ||||||||||||||||||||| |||||| || |||||||||||||    
T  25084818 attttatgtgtctttatctcttcaaattaaaaaaatggagaaaca 25084862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 293 - 333
Target Start/End: Complemental strand, 32915943 - 32915903
Alignment:
Q  293 ttttatgtgtctttatctctccaaattgaagaaatggagaa 333  Q
    |||| ||||||||||||||||||||| ||||||||||||||    
T  32915943 ttttttgtgtctttatctctccaaatggaagaaatggagaa 32915903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 291 - 336
Target Start/End: Complemental strand, 44647948 - 44647906
Alignment:
Q  291 gattttatgtgtctttatctctccaaattgaagaaatggagaaaca 336  Q
    |||||||||||||||||||||   ||||||||||||||||||||||    
T  44647948 gattttatgtgtctttatctc---aaattgaagaaatggagaaaca 44647906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 292 - 334
Target Start/End: Complemental strand, 29631033 - 29630991
Alignment:
Q  292 attttatgtgtctttatctctccaaattgaagaaatggagaaa 334  Q
    ||||||||||||||||| |||||||||  ||||||||||||||    
T  29631033 attttatgtgtctttatatctccaaatgaaagaaatggagaaa 29630991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 334
Target Start/End: Original strand, 6882149 - 6882190
Alignment:
Q  293 ttttatgtgtctttatctctccaaattgaagaaatggagaaa 334  Q
    |||||||||||||||||||| ||||| ||| |||||||||||    
T  6882149 ttttatgtgtctttatctcttcaaatggaacaaatggagaaa 6882190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 264
Target Start/End: Original strand, 17037968 - 17038025
Alignment:
Q  207 ttgattttttacatgccacttgtcacacatccaaccaagggaatgggaaactggagga 264  Q
    |||||||| ||  |||||||||||| ||||| || ||||||| |||||||||||||||    
T  17037968 ttgattttgtatgtgccacttgtcatacatctaagcaagggattgggaaactggagga 17038025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 334
Target Start/End: Original strand, 19889115 - 19889156
Alignment:
Q  293 ttttatgtgtctttatctctccaaattgaagaaatggagaaa 334  Q
    ||||||||||||||||||||| |||| ||| |||||||||||    
T  19889115 ttttatgtgtctttatctctctaaatggaataaatggagaaa 19889156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 293 - 333
Target Start/End: Complemental strand, 30588529 - 30588489
Alignment:
Q  293 ttttatgtgtctttatctctccaaattgaagaaatggagaa 333  Q
    ||||||||||||||||||||| |||| ||| ||||||||||    
T  30588529 ttttatgtgtctttatctctctaaatggaacaaatggagaa 30588489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0429 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: scaffold0429
Description:

Target: scaffold0429; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 6 - 290
Target Start/End: Original strand, 3981 - 4266
Alignment:
Q  6 aagcagagatggtgagggattgtagttttcatgaacaacaaagacacagtggtggtggatcacggcggagtgattttcattcatggtggcgcttaagatg 105  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| | ||||||||||| ||    
T  3981 aagcagagatggtgagggattgtagttttcatgaacaacaaagacacagtggtggtggatcacgacagagtgattttcattcacgctggcgcttaagctg 4080  T
Q  106 cgcaacggaagccgaaaacgtgggagggagaagaagaagggtgtacgattgagaaaaggggaacaatgatatgtttgttttaannnnnnnaatctcggac 205  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||       ||||||||||    
T  4081 cgcaacggaagccgaaaacatgggagggagaagaagaagggtgtacgattgagaaaaggggaacaatgaaatgtttgttttaatttttttaatctcggac 4180  T
Q  206 gttgattttttacatgccacttgtcacacatccaaccaagggaatgggaaactggaggaatt-agtattggagcatatctggactc 290  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| |||| ||||||||||||| ||||    
T  4181 gttgattttttacatgccacttgtcacacatccaaccaagggaatgggaaaatggagaaattaagtactggagcatatctgaactc 4266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0429; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 211 - 291
Target Start/End: Complemental strand, 3578 - 3497
Alignment:
Q  211 ttttttacatgccacttgtcacacatccaaccaagggaatgggaaactggaggaatt-agtattggagcatatctggactcg 291  Q
    ||||||||||||||||||||| |||||||| ||| ||| |||||||| ||||||||| |||| ||||| | |||||||||||    
T  3578 ttttttacatgccacttgtcatacatccaagcaatggactgggaaacaggaggaattaagtactggaggagatctggactcg 3497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 6 - 291
Target Start/End: Original strand, 48167201 - 48167487
Alignment:
Q  6 aagcagagatggtgagggattgtagttttcatgaacaacaaagacacagtggtggtggatcacggcggagtgattttcattcatggtggcgcttaagatg 105  Q
    |||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  48167201 aagcggagatggtgagggattgtagttttcatgaacaacaaagacacggtggtggtggatcacggcggagtgattttcattcatggtggcgcttaagctg 48167300  T
Q  106 cgcaacggaagccgaaaacgtgggagggagaagaagaagggtgtacgattgagaaaaggggaacaatgatatgtttgttttaannnnnnnaatctcggac 205  Q
    ||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||       ||||||| ||    
T  48167301 cgcaagggaagccgaaaatgtgggagggagaagaagaagggtgtacgattgagaaaaggggaacaatgaaatgtttgttttaatttttttaatctcgaac 48167400  T
Q  206 gttgattttttacatgccacttgtcacacatccaaccaagggaatgggaaactggaggaatt-agtattggagcatatctggactcg 291  Q
    ||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||| |||| ||||||| |||||||||||    
T  48167401 gttgattttttacatgccacttgtcacacatccaaccaaaggaataggaaaatggaggaattaagtactggagcagatctggactcg 48167487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 291 - 336
Target Start/End: Original strand, 12380999 - 12381044
Alignment:
Q  291 gattttatgtgtctttatctctccaaattgaagaaatggagaaaca 336  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  12380999 gattttatgtgtctttatctctccaaattgaagaaatggagaaaca 12381044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 291 - 336
Target Start/End: Original strand, 12385066 - 12385111
Alignment:
Q  291 gattttatgtgtctttatctctccaaattgaagaaatggagaaaca 336  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  12385066 gattttatgtgtctttatctctccaaattgaagaaatggagaaaca 12385111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 291 - 336
Target Start/End: Complemental strand, 45978008 - 45977963
Alignment:
Q  291 gattttatgtgtctttatctctccaaattgaagaaatggagaaaca 336  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  45978008 gattttatgtgtctttatctctccaaattgaagaaatggagaaaca 45977963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 291 - 339
Target Start/End: Original strand, 7841799 - 7841847
Alignment:
Q  291 gattttatgtgtctttatctctccaaattgaagaaatggagaaacatat 339  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||    
T  7841799 gattttatgtgtctttatctctccaaattgaagaaatggaaaaacatat 7841847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 211 - 289
Target Start/End: Complemental strand, 48166797 - 48166718
Alignment:
Q  211 ttttttacatgccacttgtcacacatccaaccaagggaatgggaaactggaggaatt-agtattggagcatatctggact 289  Q
    ||||||||||||||||||||| |||||||| ||||||| |||||||| ||||||||| |||| ||||| | |||||||||    
T  48166797 ttttttacatgccacttgtcatacatccaagcaagggactgggaaacaggaggaattaagtactggaggagatctggact 48166718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 291 - 336
Target Start/End: Complemental strand, 12151753 - 12151708
Alignment:
Q  291 gattttatgtgtctttatctctccaaattgaagaaatggagaaaca 336  Q
    |||||||||||||||||||||||||||||||| |||||||||||||    
T  12151753 gattttatgtgtctttatctctccaaattgaataaatggagaaaca 12151708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 291 - 336
Target Start/End: Complemental strand, 50484372 - 50484327
Alignment:
Q  291 gattttatgtgtctttatctctccaaattgaagaaatggagaaaca 336  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||    
T  50484372 gattttatgtgtctttatctctccaaattaaagaaatggagaaaca 50484327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 291 - 336
Target Start/End: Original strand, 23862045 - 23862090
Alignment:
Q  291 gattttatgtgtctttatctctccaaattgaagaaatggagaaaca 336  Q
    |||||||||||||||||||| |||||||||||||||| ||||||||    
T  23862045 gattttatgtgtctttatctttccaaattgaagaaatagagaaaca 23862090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 291 - 336
Target Start/End: Original strand, 50294152 - 50294197
Alignment:
Q  291 gattttatgtgtctttatctctccaaattgaagaaatggagaaaca 336  Q
    |||||||||||||||||||||||||||| |||||||| ||||||||    
T  50294152 gattttatgtgtctttatctctccaaatggaagaaattgagaaaca 50294197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 196 - 264
Target Start/End: Original strand, 34153757 - 34153825
Alignment:
Q  196 aatctcggacgttgattttttacatgccacttgtcacacatccaaccaagggaatgggaaactggagga 264  Q
    |||||| | |||||||||| || ||||||||||||| ||||| || ||||||| |||||||||||||||    
T  34153757 aatctcagccgttgattttgtatatgccacttgtcatacatctaagcaagggattgggaaactggagga 34153825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 42 - 76
Target Start/End: Complemental strand, 32804741 - 32804707
Alignment:
Q  42 aacaaagacacagtggtggtggatcacggcggagt 76  Q
    |||||||||||||||||||||||||||||||||||    
T  32804741 aacaaagacacagtggtggtggatcacggcggagt 32804707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 291 - 336
Target Start/End: Complemental strand, 40328263 - 40328217
Alignment:
Q  291 gattttatgtgtcttt-atctctccaaattgaagaaatggagaaaca 336  Q
    |||||||||||||||| ||||||||||||| |||||||| |||||||    
T  40328263 gattttatgtgtcttttatctctccaaattaaagaaatgaagaaaca 40328217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 292 - 334
Target Start/End: Complemental strand, 40988700 - 40988658
Alignment:
Q  292 attttatgtgtctttatctctccaaattgaagaaatggagaaa 334  Q
    ||||| ||||||||||||||||||||| ||| |||||||||||    
T  40988700 attttgtgtgtctttatctctccaaatagaaaaaatggagaaa 40988658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 57
Target Start/End: Complemental strand, 30322559 - 30322514
Alignment:
Q  12 agatggtgagggattgtagttttcatgaacaacaaagacacagtgg 57  Q
    ||||||| ||| ||| |||||||||||||||||||||||| |||||    
T  30322559 agatggtaaggaattatagttttcatgaacaacaaagacatagtgg 30322514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 79; Significance: 7e-37; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 6 - 131
Target Start/End: Original strand, 1253200 - 1253328
Alignment:
Q  6 aagcagagatggtgagggattgtag---ttttcatgaacaacaaagacacagtggtggtggatcacggcggagtgattttcattcatggtggcgcttaag 102  Q
    |||||| ||||||||||| ||||||   ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | |||||||||||    
T  1253200 aagcagggatggtgagggcttgtagtagttttcatgaacaacaaagacacagtggtggtggatgacggcggagtgattttcattcacgatggcgcttaag 1253299  T
Q  103 atgcgcaacggaagccgaaaacgtgggag 131  Q
     ||| ||| |||||| |||||||||||||    
T  1253300 ctgcacaagggaagcagaaaacgtgggag 1253328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 291 - 336
Target Start/End: Complemental strand, 27033637 - 27033592
Alignment:
Q  291 gattttatgtgtctttatctctccaaattgaagaaatggagaaaca 336  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  27033637 gattttatgtgtctttatctctccaaattgaagaaatggagaaaca 27033592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 291 - 336
Target Start/End: Original strand, 43720036 - 43720081
Alignment:
Q  291 gattttatgtgtctttatctctccaaattgaagaaatggagaaaca 336  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  43720036 gattttatgtgtctttatctctccaaattgaagaaatggagaaaca 43720081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 291 - 334
Target Start/End: Complemental strand, 40851759 - 40851716
Alignment:
Q  291 gattttatgtgtctttatctctccaaattgaagaaatggagaaa 334  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  40851759 gattttatgtgtctttatctctccaaattgaagaaatggagaaa 40851716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 291 - 336
Target Start/End: Original strand, 19830521 - 19830566
Alignment:
Q  291 gattttatgtgtctttatctctccaaattgaagaaatggagaaaca 336  Q
    |||||||||||||||||||||||||||||||||||||||| |||||    
T  19830521 gattttatgtgtctttatctctccaaattgaagaaatggaaaaaca 19830566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 291 - 336
Target Start/End: Original strand, 34373674 - 34373719
Alignment:
Q  291 gattttatgtgtctttatctctccaaattgaagaaatggagaaaca 336  Q
    |||||| ||| |||||||||||||||||||||||||||||||||||    
T  34373674 gattttttgtctctttatctctccaaattgaagaaatggagaaaca 34373719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 291 - 336
Target Start/End: Complemental strand, 34373817 - 34373772
Alignment:
Q  291 gattttatgtgtctttatctctccaaattgaagaaatggagaaaca 336  Q
    |||||||||||||||||||||||||||||||| ||||| |||||||    
T  34373817 gattttatgtgtctttatctctccaaattgaaaaaatgaagaaaca 34373772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 292 - 336
Target Start/End: Complemental strand, 2229968 - 2229924
Alignment:
Q  292 attttatgtgtctttatctctccaaattgaagaaatggagaaaca 336  Q
    |||||||||||||||||||||||||||| ||||||| ||||||||    
T  2229968 attttatgtgtctttatctctccaaattaaagaaatagagaaaca 2229924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 292 - 334
Target Start/End: Original strand, 550906 - 550948
Alignment:
Q  292 attttatgtgtctttatctctccaaattgaagaaatggagaaa 334  Q
    ||||||||| ||||||||||||||||| |||||||||||||||    
T  550906 attttatgtatctttatctctccaaatggaagaaatggagaaa 550948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 298 - 333
Target Start/End: Complemental strand, 32577511 - 32577476
Alignment:
Q  298 tgtgtctttatctctccaaattgaagaaatggagaa 333  Q
    ||||||||||||||||||||| ||||||||||||||    
T  32577511 tgtgtctttatctctccaaatagaagaaatggagaa 32577476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 334
Target Start/End: Complemental strand, 3009233 - 3009192
Alignment:
Q  293 ttttatgtgtctttatctctccaaattgaagaaatggagaaa 334  Q
    ||||||||||||||||||||| |||| ||| |||||||||||    
T  3009233 ttttatgtgtctttatctctctaaatggaacaaatggagaaa 3009192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 291 - 336
Target Start/End: Complemental strand, 12402951 - 12402906
Alignment:
Q  291 gattttatgtgtctttatctctccaaattgaagaaatggagaaaca 336  Q
    ||||||||||||||||||||||||||||| |  ||||| |||||||    
T  12402951 gattttatgtgtctttatctctccaaattaagaaaatgaagaaaca 12402906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 334
Target Start/End: Original strand, 31523749 - 31523790
Alignment:
Q  293 ttttatgtgtctttatctctccaaattgaagaaatggagaaa 334  Q
    ||||||||||||||||||||| |||| ||| |||||||||||    
T  31523749 ttttatgtgtctttatctctctaaatggaacaaatggagaaa 31523790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 334
Target Start/End: Complemental strand, 42613074 - 42613033
Alignment:
Q  293 ttttatgtgtctttatctctccaaattgaagaaatggagaaa 334  Q
    ||||||||||||||||||||| |||| ||| |||||||||||    
T  42613074 ttttatgtgtctttatctctctaaatagaacaaatggagaaa 42613033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 291 - 336
Target Start/End: Complemental strand, 46167379 - 46167334
Alignment:
Q  291 gattttatgtgtctttatctctccaaattgaagaaatggagaaaca 336  Q
    |||| ||| |||||||||||||| |||||||||||||||| |||||    
T  46167379 gattatatttgtctttatctctctaaattgaagaaatggaaaaaca 46167334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 292 - 339
Target Start/End: Complemental strand, 5033091 - 5033044
Alignment:
Q  292 attttatgtgtctttatctctccaaattgaagaaatggagaaacatat 339  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  5033091 attttatgtgtctttatctctccaaattgaagaaatggagaaacatat 5033044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 291 - 336
Target Start/End: Original strand, 30426758 - 30426803
Alignment:
Q  291 gattttatgtgtctttatctctccaaattgaagaaatggagaaaca 336  Q
    |||||||||||||||||||||||||||||||||||||||| |||||    
T  30426758 gattttatgtgtctttatctctccaaattgaagaaatggaaaaaca 30426803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 291 - 336
Target Start/End: Complemental strand, 36991342 - 36991297
Alignment:
Q  291 gattttatgtgtctttatctctccaaattgaagaaatggagaaaca 336  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||    
T  36991342 gattttacgtgtctttatctctccaaattgaagaaatggagaaaca 36991297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 292 - 336
Target Start/End: Original strand, 28318992 - 28319036
Alignment:
Q  292 attttatgtgtctttatctctccaaattgaagaaatggagaaaca 336  Q
    ||||||||||||||| |||||||||||||||||||||||||||||    
T  28318992 attttatgtgtctttgtctctccaaattgaagaaatggagaaaca 28319036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 291 - 336
Target Start/End: Complemental strand, 41511248 - 41511203
Alignment:
Q  291 gattttatgtgtctttatctctccaaattgaagaaatggagaaaca 336  Q
    |||||||||||| ||||||||||||||||||||||||||| |||||    
T  41511248 gattttatgtgtttttatctctccaaattgaagaaatggaaaaaca 41511203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 291 - 336
Target Start/End: Complemental strand, 28069705 - 28069660
Alignment:
Q  291 gattttatgtgtctttatctctccaaattgaagaaatggagaaaca 336  Q
    |||||||||||||||||||||||||||| |||||||| || |||||    
T  28069705 gattttatgtgtctttatctctccaaatggaagaaattgaaaaaca 28069660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 292 - 336
Target Start/End: Original strand, 10652709 - 10652752
Alignment:
Q  292 attttatgtgtctttatctctccaaattgaagaaatggagaaaca 336  Q
    ||||||||||| ||||||||||||||||||||||||| |||||||    
T  10652709 attttatgtgt-tttatctctccaaattgaagaaatgaagaaaca 10652752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 291 - 330
Target Start/End: Original strand, 40695336 - 40695375
Alignment:
Q  291 gattttatgtgtctttatctctccaaattgaagaaatgga 330  Q
    |||||||||| |||||||| ||||||||||||||||||||    
T  40695336 gattttatgtttctttatccctccaaattgaagaaatgga 40695375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 330
Target Start/End: Complemental strand, 21492767 - 21492730
Alignment:
Q  293 ttttatgtgtctttatctctccaaattgaagaaatgga 330  Q
    |||| ||||||||||||||||||||| |||||||||||    
T  21492767 ttttgtgtgtctttatctctccaaatggaagaaatgga 21492730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 334
Target Start/End: Original strand, 37966533 - 37966574
Alignment:
Q  293 ttttatgtgtctttatctctccaaattgaagaaatggagaaa 334  Q
    |||||||| |||||||||||||||||  ||||||||||||||    
T  37966533 ttttatgtatctttatctctccaaataaaagaaatggagaaa 37966574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 292 - 336
Target Start/End: Original strand, 10672602 - 10672646
Alignment:
Q  292 attttatgtgtctttatctctccaaattgaagaaatggagaaaca 336  Q
    ||||||||| | ||||||||||||||||||| ||||| |||||||    
T  10672602 attttatgtatttttatctctccaaattgaataaatgaagaaaca 10672646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 292 - 339
Target Start/End: Complemental strand, 4804433 - 4804386
Alignment:
Q  292 attttatgtgtctttatctctccaaattgaagaaatggagaaacatat 339  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  4804433 attttatgtgtctttatctctccaaattgaagaaatggagaaacatat 4804386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 292 - 339
Target Start/End: Complemental strand, 32737859 - 32737812
Alignment:
Q  292 attttatgtgtctttatctctccaaattgaagaaatggagaaacatat 339  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  32737859 attttatgtgtctttatctctccaaattgaagaaatggagaaacatat 32737812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 291 - 336
Target Start/End: Complemental strand, 7162070 - 7162025
Alignment:
Q  291 gattttatgtgtctttatctctccaaattgaagaaatggagaaaca 336  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  7162070 gattttatgtgtctttatctctccaaattgaagaaatggagaaaca 7162025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 291 - 336
Target Start/End: Original strand, 1249235 - 1249280
Alignment:
Q  291 gattttatgtgtctttatctctccaaattgaagaaatggagaaaca 336  Q
    |||||||||||||||||||| |||||||||||||||||||||||||    
T  1249235 gattttatgtgtctttatctttccaaattgaagaaatggagaaaca 1249280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 291 - 336
Target Start/End: Complemental strand, 17944148 - 17944103
Alignment:
Q  291 gattttatgtgtctttatctctccaaattgaagaaatggagaaaca 336  Q
    |||||||||||| |||||||||||||||||||||||||||||||||    
T  17944148 gattttatgtgtttttatctctccaaattgaagaaatggagaaaca 17944103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 291 - 336
Target Start/End: Complemental strand, 29698149 - 29698104
Alignment:
Q  291 gattttatgtgtctttatctctccaaattgaagaaatggagaaaca 336  Q
    |||||||||||||||||| |||||||||||||||||||||||||||    
T  29698149 gattttatgtgtctttatttctccaaattgaagaaatggagaaaca 29698104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 291 - 330
Target Start/End: Original strand, 21159458 - 21159497
Alignment:
Q  291 gattttatgtgtctttatctctccaaattgaagaaatgga 330  Q
    |||||||||||||||||| |||||||||||||||||||||    
T  21159458 gattttatgtgtctttatatctccaaattgaagaaatgga 21159497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 291 - 334
Target Start/End: Complemental strand, 30460806 - 30460763
Alignment:
Q  291 gattttatgtgtctttatctctccaaattgaagaaatggagaaa 334  Q
    |||||||||||||||||||||||||||| ||||||||| |||||    
T  30460806 gattttatgtgtctttatctctccaaatagaagaaatgaagaaa 30460763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 292 - 332
Target Start/End: Complemental strand, 12412622 - 12412582
Alignment:
Q  292 attttatgtgtctttatctctccaaattgaagaaatggaga 332  Q
    ||||||||| | |||||||||||||||||||||||||||||    
T  12412622 attttatgtatttttatctctccaaattgaagaaatggaga 12412582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 293 - 336
Target Start/End: Complemental strand, 27826522 - 27826479
Alignment:
Q  293 ttttatgtgtctttatctctccaaattgaagaaatggagaaaca 336  Q
    ||||||||||||||||||||| |||| |||||||| ||||||||    
T  27826522 ttttatgtgtctttatctctcaaaatggaagaaattgagaaaca 27826479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 291 - 332
Target Start/End: Original strand, 17398783 - 17398824
Alignment:
Q  291 gattttatgtgtctttatctctccaaattgaagaaatggaga 332  Q
    |||||||||||||||||||||||||||| || |||| |||||    
T  17398783 gattttatgtgtctttatctctccaaatggaggaaagggaga 17398824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 292 - 339
Target Start/End: Original strand, 4895825 - 4895872
Alignment:
Q  292 attttatgtgtctttatctctccaaattgaagaaatggagaaacatat 339  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  4895825 attttatgtgtctttatctctccaaattgaagaaatggagaaacatat 4895872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 292 - 339
Target Start/End: Original strand, 32129707 - 32129754
Alignment:
Q  292 attttatgtgtctttatctctccaaattgaagaaatggagaaacatat 339  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  32129707 attttatgtgtctttatctctccaaattgaagaaatggagaaacatat 32129754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 291 - 336
Target Start/End: Complemental strand, 13032105 - 13032060
Alignment:
Q  291 gattttatgtgtctttatctctccaaattgaagaaatggagaaaca 336  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  13032105 gattttatgtgtctttatctctccaaattgaagaaatggagaaaca 13032060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 291 - 336
Target Start/End: Complemental strand, 39902401 - 39902356
Alignment:
Q  291 gattttatgtgtctttatctctccaaattgaagaaatggagaaaca 336  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  39902401 gattttatgtgtctttatctctccaaattgaagaaatggagaaaca 39902356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 291 - 336
Target Start/End: Complemental strand, 11775778 - 11775733
Alignment:
Q  291 gattttatgtgtctttatctctccaaattgaagaaatggagaaaca 336  Q
    |||||||||||| |||||||||||||||||||||||||||||||||    
T  11775778 gattttatgtgtttttatctctccaaattgaagaaatggagaaaca 11775733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 291 - 336
Target Start/End: Original strand, 35660698 - 35660743
Alignment:
Q  291 gattttatgtgtctttatctctccaaattgaagaaatggagaaaca 336  Q
    |||||||||||||||||||||||||||||||||||| |||||||||    
T  35660698 gattttatgtgtctttatctctccaaattgaagaaacggagaaaca 35660743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 291 - 336
Target Start/End: Complemental strand, 37266717 - 37266672
Alignment:
Q  291 gattttatgtgtctttatctctccaaattgaagaaatggagaaaca 336  Q
    |||||||||||||||||||||||||||||||||||||||| |||||    
T  37266717 gattttatgtgtctttatctctccaaattgaagaaatggaaaaaca 37266672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 291 - 333
Target Start/End: Complemental strand, 43309104 - 43309062
Alignment:
Q  291 gattttatgtgtctttatctctccaaattgaagaaatggagaa 333  Q
    |||||||||||||||||||||| ||||||||||||||||||||    
T  43309104 gattttatgtgtctttatctcttcaaattgaagaaatggagaa 43309062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 294 - 336
Target Start/End: Complemental strand, 14349787 - 14349745
Alignment:
Q  294 tttatgtgtctttatctctccaaattgaagaaatggagaaaca 336  Q
    ||||||||||||||||| |||||||| ||||||||||||||||    
T  14349787 tttatgtgtctttatctttccaaattaaagaaatggagaaaca 14349745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 291 - 328
Target Start/End: Original strand, 1475727 - 1475764
Alignment:
Q  291 gattttatgtgtctttatctctccaaattgaagaaatg 328  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  1475727 gattttatgtgtctttatcactccaaattgaagaaatg 1475764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 292 - 336
Target Start/End: Complemental strand, 4592785 - 4592742
Alignment:
Q  292 attttatgtgtctttatctctccaaattgaagaaatggagaaaca 336  Q
    ||||||||||| || ||||||||||||||||||||||||||||||    
T  4592785 attttatgtgtatt-atctctccaaattgaagaaatggagaaaca 4592742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 292 - 334
Target Start/End: Complemental strand, 23253778 - 23253736
Alignment:
Q  292 attttatgtgtctttatctctccaaattgaagaaatggagaaa 334  Q
    ||||||||||||| ||||||||||||| | |||||||||||||    
T  23253778 attttatgtgtctctatctctccaaatggtagaaatggagaaa 23253736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 291 - 333
Target Start/End: Original strand, 40753251 - 40753293
Alignment:
Q  291 gattttatgtgtctttatctctccaaattgaagaaatggagaa 333  Q
    |||||||||||  |||||||||||||||| |||||||||||||    
T  40753251 gattttatgtgcttttatctctccaaattaaagaaatggagaa 40753293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 291 - 336
Target Start/End: Original strand, 8441060 - 8441105
Alignment:
Q  291 gattttatgtgtctttatctctccaaattgaagaaatggagaaaca 336  Q
    |||| ||||||| |||||||||||||||||| |||| |||||||||    
T  8441060 gattgtatgtgtatttatctctccaaattgatgaaacggagaaaca 8441105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 291 - 336
Target Start/End: Original strand, 18625510 - 18625555
Alignment:
Q  291 gattttatgtgtctttatctctccaaattgaagaaatggagaaaca 336  Q
    ||||||||||||||||||||||||||||  ||||||| || |||||    
T  18625510 gattttatgtgtctttatctctccaaatgaaagaaattgaaaaaca 18625555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 291 - 327
Target Start/End: Complemental strand, 30355254 - 30355218
Alignment:
Q  291 gattttatgtgtctttatctctccaaattgaagaaat 327  Q
    |||||| |||||||||||||||||||||| |||||||    
T  30355254 gattttttgtgtctttatctctccaaattaaagaaat 30355218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 294 - 334
Target Start/End: Original strand, 38283828 - 38283868
Alignment:
Q  294 tttatgtgtctttatctctccaaattgaagaaatggagaaa 334  Q
    ||||||||||| ||||||||||||||| | |||||||||||    
T  38283828 tttatgtgtctatatctctccaaattgtaaaaatggagaaa 38283868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 292 - 339
Target Start/End: Original strand, 5763252 - 5763299
Alignment:
Q  292 attttatgtgtctttatctctccaaattgaagaaatggagaaacatat 339  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  5763252 attttatgtgtctttatctctccaaattgaagaaatggagaaacatat 5763299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 289 - 336
Target Start/End: Original strand, 33247215 - 33247262
Alignment:
Q  289 tcgattttatgtgtctttatctctccaaattgaagaaatggagaaaca 336  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  33247215 tcgattttatgtgtctttatctctccaaattgaagaaatggagaaaca 33247262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 291 - 336
Target Start/End: Original strand, 3952259 - 3952304
Alignment:
Q  291 gattttatgtgtctttatctctccaaattgaagaaatggagaaaca 336  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  3952259 gattttatgtgtctttatctctccaaattgaagaaatggagaaaca 3952304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 291 - 336
Target Start/End: Complemental strand, 12153157 - 12153112
Alignment:
Q  291 gattttatgtgtctttatctctccaaattgaagaaatggagaaaca 336  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  12153157 gattttatgtgtctttatctctccaaattgaagaaatggagaaaca 12153112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 291 - 336
Target Start/End: Original strand, 12241497 - 12241542
Alignment:
Q  291 gattttatgtgtctttatctctccaaattgaagaaatggagaaaca 336  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  12241497 gattttatgtgtctttatctctccaaattgaagaaatggagaaaca 12241542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 291 - 339
Target Start/End: Complemental strand, 23610628 - 23610580
Alignment:
Q  291 gattttatgtgtctttatctctccaaattgaagaaatggagaaacatat 339  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||    
T  23610628 gattttatgtatctttatctctccaaattgaagaaatggagaaacatat 23610580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 292 - 339
Target Start/End: Complemental strand, 56558264 - 56558217
Alignment:
Q  292 attttatgtgtctttatctctccaaattgaagaaatggagaaacatat 339  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||    
T  56558264 attttatgtgtctttatctctccaaattgaagaaatagagaaacatat 56558217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 291 - 336
Target Start/End: Original strand, 5416556 - 5416601
Alignment:
Q  291 gattttatgtgtctttatctctccaaattgaagaaatggagaaaca 336  Q
    |||||||||||||||||||| |||||||||||||||||||||||||    
T  5416556 gattttatgtgtctttatctgtccaaattgaagaaatggagaaaca 5416601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 291 - 336
Target Start/End: Original strand, 17080729 - 17080774
Alignment:
Q  291 gattttatgtgtctttatctctccaaattgaagaaatggagaaaca 336  Q
    |||||||| |||||||||||||||||||||||||||||||||||||    
T  17080729 gattttatctgtctttatctctccaaattgaagaaatggagaaaca 17080774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 291 - 336
Target Start/End: Complemental strand, 34778407 - 34778362
Alignment:
Q  291 gattttatgtgtctttatctctccaaattgaagaaatggagaaaca 336  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||    
T  34778407 gattttatgtgtctttatctctccacattgaagaaatggagaaaca 34778362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 291 - 336
Target Start/End: Complemental strand, 52018769 - 52018724
Alignment:
Q  291 gattttatgtgtctttatctctccaaattgaagaaatggagaaaca 336  Q
    |||||||||||| |||||||||||||||||||||||||||||||||    
T  52018769 gattttatgtgtttttatctctccaaattgaagaaatggagaaaca 52018724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 292 - 336
Target Start/End: Original strand, 12312593 - 12312637
Alignment:
Q  292 attttatgtgtctttatctctccaaattgaagaaatggagaaaca 336  Q
    |||||||||||||||||||||| ||||||||||||||||||||||    
T  12312593 attttatgtgtctttatctctctaaattgaagaaatggagaaaca 12312637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 292 - 336
Target Start/End: Original strand, 19902008 - 19902052
Alignment:
Q  292 attttatgtgtctttatctctccaaattgaagaaatggagaaaca 336  Q
    |||||||||||||||||||||||||||||||||||| ||||||||    
T  19902008 attttatgtgtctttatctctccaaattgaagaaatagagaaaca 19902052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 291 - 335
Target Start/End: Original strand, 38079809 - 38079853
Alignment:
Q  291 gattttatgtgtctttatctctccaaattgaagaaatggagaaac 335  Q
    |||||||||||||||||||||||||||||||| ||||||||||||    
T  38079809 gattttatgtgtctttatctctccaaattgaaaaaatggagaaac 38079853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 291 - 336
Target Start/End: Original strand, 18207129 - 18207174
Alignment:
Q  291 gattttatgtgtctttatctctccaaattgaagaaatggagaaaca 336  Q
    |||||||||||||||||||| |||||||||||||||| ||||||||    
T  18207129 gattttatgtgtctttatctttccaaattgaagaaattgagaaaca 18207174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 291 - 336
Target Start/End: Complemental strand, 39862503 - 39862458
Alignment:
Q  291 gattttatgtgtctttatctctccaaattgaagaaatggagaaaca 336  Q
    ||||||||||||||||||||||||||||||||||||  ||||||||    
T  39862503 gattttatgtgtctttatctctccaaattgaagaaaatgagaaaca 39862458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 292 - 336
Target Start/End: Original strand, 47922165 - 47922209
Alignment:
Q  292 attttatgtgtctttatctctccaaattgaagaaatggagaaaca 336  Q
    |||||| ||||||||||||||| ||||||||||||||||||||||    
T  47922165 attttacgtgtctttatctctctaaattgaagaaatggagaaaca 47922209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 292 - 327
Target Start/End: Original strand, 33262642 - 33262677
Alignment:
Q  292 attttatgtgtctttatctctccaaattgaagaaat 327  Q
    ||||||||||||||||||||||||||||||||||||    
T  33262642 attttatgtgtctttatctctccaaattgaagaaat 33262677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 298 - 333
Target Start/End: Original strand, 25442271 - 25442306
Alignment:
Q  298 tgtgtctttatctctccaaattgaagaaatggagaa 333  Q
    ||||||||||||||||||||| ||||||||||||||    
T  25442271 tgtgtctttatctctccaaatggaagaaatggagaa 25442306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 291 - 336
Target Start/End: Complemental strand, 24073603 - 24073558
Alignment:
Q  291 gattttatgtgtctttatctctccaaattgaagaaatggagaaaca 336  Q
    ||||||||||| ||| |||||||||||| |||||||| ||||||||    
T  24073603 gattttatgtgccttcatctctccaaatggaagaaattgagaaaca 24073558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 334
Target Start/End: Original strand, 37002332 - 37002373
Alignment:
Q  293 ttttatgtgtctttatctctccaaattgaagaaatggagaaa 334  Q
    ||||||||||||||||||||| |||| ||| |||||||||||    
T  37002332 ttttatgtgtctttatctctctaaatggaacaaatggagaaa 37002373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 334
Target Start/End: Original strand, 56269158 - 56269199
Alignment:
Q  293 ttttatgtgtctttatctctccaaattgaagaaatggagaaa 334  Q
    ||||||||||||||||||||| |||| ||| |||||||||||    
T  56269158 ttttatgtgtctttatctctctaaatggaacaaatggagaaa 56269199  T

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Target: scaffold0012 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 291 - 336
Target Start/End: Complemental strand, 208049 - 208004
Alignment:
Q  291 gattttatgtgtctttatctctccaaattgaagaaatggagaaaca 336  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  208049 gattttatgtgtctttatctctccaaattgaagaaatggagaaaca 208004  T

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Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 291 - 336
Target Start/End: Complemental strand, 28564877 - 28564832
Alignment:
Q  291 gattttatgtgtctttatctctccaaattgaagaaatggagaaaca 336  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  28564877 gattttatgtgtctttatctctccaaattgaagaaatggagaaaca 28564832  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 291 - 336
Target Start/End: Complemental strand, 35316811 - 35316766
Alignment:
Q  291 gattttatgtgtctttatctctccaaattgaagaaatggagaaaca 336  Q
    |||||||| |||||||||||||||||||||||||||||||||||||    
T  35316811 gattttatatgtctttatctctccaaattgaagaaatggagaaaca 35316766  T

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Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 291 - 335
Target Start/End: Complemental strand, 13238667 - 13238623
Alignment:
Q  291 gattttatgtgtctttatctctccaaattgaagaaatggagaaac 335  Q
    ||||||||||||||||||||||||||||||||||||| |||||||    
T  13238667 gattttatgtgtctttatctctccaaattgaagaaattgagaaac 13238623  T

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Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 294 - 336
Target Start/End: Original strand, 41983431 - 41983473
Alignment:
Q  294 tttatgtgtctttatctctccaaattgaagaaatggagaaaca 336  Q
    |||||||||||||||||||||||||| ||||||||||||||||    
T  41983431 tttatgtgtctttatctctccaaattaaagaaatggagaaaca 41983473  T

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Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 291 - 336
Target Start/End: Complemental strand, 39465761 - 39465716
Alignment:
Q  291 gattttatgtgtctttatctctccaaattgaagaaatggagaaaca 336  Q
    |||||||||||| ||||||||||||||||||| |||||||||||||    
T  39465761 gattttatgtgtttttatctctccaaattgaaaaaatggagaaaca 39465716  T

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Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 291 - 336
Target Start/End: Original strand, 45625151 - 45625196
Alignment:
Q  291 gattttatgtgtctttatctctccaaattgaagaaatggagaaaca 336  Q
    ||||||| ||||||||||||||| ||||||||||||||||||||||    
T  45625151 gattttacgtgtctttatctctctaaattgaagaaatggagaaaca 45625196  T

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Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 292 - 336
Target Start/End: Complemental strand, 10877686 - 10877643
Alignment:
Q  292 attttatgtgtctttatctctccaaattgaagaaatggagaaaca 336  Q
    ||||||||||| |||||||||||||||||||||||||||||||||    
T  10877686 attttatgtgt-tttatctctccaaattgaagaaatggagaaaca 10877643  T

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Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 295 - 335
Target Start/End: Original strand, 42075456 - 42075496
Alignment:
Q  295 ttatgtgtctttatctctccaaattgaagaaatggagaaac 335  Q
    |||||||||||||||||||||||| ||||||||||| ||||    
T  42075456 ttatgtgtctttatctctccaaatggaagaaatggataaac 42075496  T

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Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 334
Target Start/End: Complemental strand, 374987 - 374946
Alignment:
Q  293 ttttatgtgtctttatctctccaaattgaagaaatggagaaa 334  Q
    ||||||||||||||||||||| |||| ||| |||||||||||    
T  374987 ttttatgtgtctttatctctctaaatggaacaaatggagaaa 374946  T

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Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 291 - 332
Target Start/End: Complemental strand, 2061363 - 2061322
Alignment:
Q  291 gattttatgtgtctttatctctccaaattgaagaaatggaga 332  Q
    ||||||||| |||||||||||||||||| |||||||| ||||    
T  2061363 gattttatgcgtctttatctctccaaatggaagaaattgaga 2061322  T

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Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 334
Target Start/End: Original strand, 3354844 - 3354885
Alignment:
Q  293 ttttatgtgtctttatctctccaaattgaagaaatggagaaa 334  Q
    ||||||||||||||||||||| |||| ||| |||||||||||    
T  3354844 ttttatgtgtctttatctctctaaatagaacaaatggagaaa 3354885  T

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Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 334
Target Start/End: Complemental strand, 8988850 - 8988809
Alignment:
Q  293 ttttatgtgtctttatctctccaaattgaagaaatggagaaa 334  Q
    ||||||||||||||||||||| |||| ||| |||||||||||    
T  8988850 ttttatgtgtctttatctctctaaatggaacaaatggagaaa 8988809  T

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Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 334
Target Start/End: Complemental strand, 29188647 - 29188606
Alignment:
Q  293 ttttatgtgtctttatctctccaaattgaagaaatggagaaa 334  Q
    ||||||||||||||||||||| |||| ||| |||||||||||    
T  29188647 ttttatgtgtctttatctctctaaatggaacaaatggagaaa 29188606  T

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Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 291 - 335
Target Start/End: Original strand, 23259576 - 23259620
Alignment:
Q  291 gattttatgtgtctttatctctccaaattgaagaaatggagaaac 335  Q
    |||||||| |||||||||| ||| |||||||||||||| ||||||    
T  23259576 gattttatatgtctttatccctcaaaattgaagaaatgaagaaac 23259620  T

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Target: scaffold0456 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: scaffold0456
Description:

Target: scaffold0456; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 291 - 332
Target Start/End: Complemental strand, 13682 - 13641
Alignment:
Q  291 gattttatgtgtctttatctctccaaattgaagaaatggaga 332  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  13682 gattttatgtgtctttatctctccaaattgaagaaatggaga 13641  T

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Target: scaffold0006 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 291 - 336
Target Start/End: Original strand, 73929 - 73974
Alignment:
Q  291 gattttatgtgtctttatctctccaaattgaagaaatggagaaaca 336  Q
    |||||||||||| |||||||||| ||||||||||||||||||||||    
T  73929 gattttatgtgtttttatctctctaaattgaagaaatggagaaaca 73974  T

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Target: scaffold0250 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0250
Description:

Target: scaffold0250; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 291 - 336
Target Start/End: Complemental strand, 7133 - 7088
Alignment:
Q  291 gattttatgtgtctttatctctccaaattgaagaaatggagaaaca 336  Q
    |||||||| ||||||||||||| ||||||||||||||| |||||||    
T  7133 gattttatatgtctttatctctgcaaattgaagaaatgaagaaaca 7088  T

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Target: scaffold0035 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 291 - 336
Target Start/End: Original strand, 16486 - 16531
Alignment:
Q  291 gattttatgtgtctttatctctccaaattgaagaaatggagaaaca 336  Q
    ||||||||||   |||||||||||||||||||||||||||||||||    
T  16486 gattttatgtaattttatctctccaaattgaagaaatggagaaaca 16531  T

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Target: scaffold0009 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 291 - 326
Target Start/End: Original strand, 6524 - 6559
Alignment:
Q  291 gattttatgtgtctttatctctccaaattgaagaaa 326  Q
    ||||||||||||||||||||||| ||||||||||||    
T  6524 gattttatgtgtctttatctctcaaaattgaagaaa 6559  T

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Target: scaffold0008 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 291 - 336
Target Start/End: Original strand, 9287 - 9332
Alignment:
Q  291 gattttatgtgtctttatctctccaaattgaagaaatggagaaaca 336  Q
    ||||| ||||| |||||||||||||||| |||||||| ||||||||    
T  9287 gatttcatgtgcctttatctctccaaatggaagaaattgagaaaca 9332  T

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