View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10319_high_19 (Length: 323)
Name: NF10319_high_19
Description: NF10319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10319_high_19 |
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| [»] scaffold0003 (2 HSPs) |
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Alignment Details
Target: scaffold0003 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 265
Target Start/End: Complemental strand, 304828 - 304565
Alignment:
| Q |
1 |
tagtggaccctgtttattatatataattggttactgataaagattggaacttcgaataacacaatacaatgagggatgtttttggaaatgttgcaaaaat |
100 |
Q |
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|||||| ||||||| ||||||||||||| |||||| ||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
304828 |
tagtgggccctgtt-attatatataatttgttactaataaaaattggaacttcgaataacacaatacaatgaaggatgtttttggaaatgttgcaaaaac |
304730 |
T |
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| Q |
101 |
atgaacagtcctttatcatctacttttgcaaccactaccaccaagttgactcactgtannnnnnnataacctgagttgactcaaattaacacaatcaaaa |
200 |
Q |
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|||||||||||||||||||||||| |||||||||| |||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
304729 |
atgaacagtcctttatcatctactcttgcaaccacaaccaccgagttgactcactgtattttttaataacctgagttgactcaaattaacacaatcaaaa |
304630 |
T |
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| Q |
201 |
ccatctctttcttttctcaaagatattgaatctctacttactttgtccaaactttcaaaattaac |
265 |
Q |
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| T |
304629 |
ccatctctttcttttctcaaagatattgaatctctacttactttgtccaaactttcaaaattaac |
304565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 281 - 317
Target Start/End: Complemental strand, 304543 - 304507
Alignment:
| Q |
281 |
cagattcaaactaatctccttcaatctcgttcatctc |
317 |
Q |
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||||| |||||||||||||||||||||||||| |||| |
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| T |
304543 |
cagatccaaactaatctccttcaatctcgttcttctc |
304507 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 164; Significance: 1e-87; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 58 - 317
Target Start/End: Complemental strand, 20072120 - 20071848
Alignment:
| Q |
58 |
aacacaatacaatgagggatgtttttggaaatgttgcaaaaatatgaacagtcctttatcatctacttttgcaaccactaccaccaagttgactcactgt |
157 |
Q |
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| T |
20072120 |
aacacaatacaatgaaggatgtttttggaaatgttgcaaaaatatgaacagtcctttatcatctactcttgcgaccacaaccaccgagttgactcactat |
20072021 |
T |
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| Q |
158 |
annnnnnnataacctgagttgactcaaattaacacaatcaaaaccatctctttcttttctcaaagatattgaatctctacttactttgtccaaactttca |
257 |
Q |
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| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
20072020 |
attttttaataacctgagttgactcaaattaacacaatcaaaaccatctctttcttttctcaaagatattgaatctctacttattttgtccaaactttca |
20071921 |
T |
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| Q |
258 |
aaat-------------taacctcaccattaccctccagattcaaactaatctccttcaatctcgttcatctc |
317 |
Q |
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|||| |||||| ||||||||||||||||| ||||||||| |||||||||||||||| |||| |
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| T |
20071920 |
aaattaacaaccaaaattaaccttaccattaccctccagatccaaactaatatccttcaatctcgttcttctc |
20071848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 20073034 - 20072970
Alignment:
| Q |
1 |
tagtggaccctgtttattatatataattggttactgataaagattggaacttcgaataacacaata |
66 |
Q |
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|||||| ||||||| |||||||| |||| ||||| ||||| |||||||||||||||||||||||| |
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| T |
20073034 |
tagtgggccctgtt-attatataaaatttattactaataaaaattggaacttcgaataacacaata |
20072970 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 172 - 265
Target Start/End: Original strand, 33073379 - 33073479
Alignment:
| Q |
172 |
tgagttgactcaaattaacacaatcaaaaccatctctttcttttctcaaagatattgaatctctac---------ttactttgtccaaactttcaaaatt |
262 |
Q |
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||||||||||||||||| || | ||||| |||||||||| ||||||| ||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
33073379 |
tgagttgactcaaattagca--accaaaatcatctctttcctttctcagagatattgaatctctaccccttcatgttactttgtccaaactttcaaaatt |
33073476 |
T |
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| Q |
263 |
aac |
265 |
Q |
| |
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||| |
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| T |
33073477 |
aac |
33073479 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 14 - 99
Target Start/End: Original strand, 33073263 - 33073347
Alignment:
| Q |
14 |
ttattatatataattggttactgataaagattggaacttcgaataacacaatacaatgagggatgtttttggaaatgttgcaaaaa |
99 |
Q |
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|||||||||| ||||||||||| ||||| | | ||| || ||||||| |||||||||| || |||||| |||||||||||||||| |
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| T |
33073263 |
ttattatatacaattggttactaataaaaactagaattttcaataaca-aatacaatgaagggtgttttgggaaatgttgcaaaaa |
33073347 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 172 - 265
Target Start/End: Complemental strand, 36984764 - 36984664
Alignment:
| Q |
172 |
tgagttgactcaaattaacacaatcaaaaccatctctttcttttctcaaagatattgaatctctac---------ttactttgtccaaactttcaaaatt |
262 |
Q |
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||||||||||||||||| || ||||||| ||||| |||| |||||| ||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
36984764 |
tgagttgactcaaattagca--atcaaaatcatctttttcctttctcggagatattgaatctctaccccttcatgttactttgtccaaactttcaaaatt |
36984667 |
T |
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| Q |
263 |
aac |
265 |
Q |
| |
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||| |
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| T |
36984666 |
aac |
36984664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 172 - 265
Target Start/End: Complemental strand, 37010203 - 37010103
Alignment:
| Q |
172 |
tgagttgactcaaattaacacaatcaaaaccatctctttcttttctcaaagatattgaatctctac---------ttactttgtccaaactttcaaaatt |
262 |
Q |
| |
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||||||||||||||||| || ||||||| ||||| |||| |||||| ||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
37010203 |
tgagttgactcaaattagca--atcaaaatcatctttttcctttctcggagatattgaatctctaccccttcatgttactttgtccaaactttcaaaatt |
37010106 |
T |
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| Q |
263 |
aac |
265 |
Q |
| |
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||| |
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| T |
37010105 |
aac |
37010103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 113
Target Start/End: Complemental strand, 25057330 - 25057278
Alignment:
| Q |
61 |
acaatacaatgagggatgtttttggaaatgttgcaaaaatatgaacagtcctt |
113 |
Q |
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|||||||||||| || ||||||||||||||| |||||||||||||| ||||| |
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| T |
25057330 |
acaatacaatgaagggtgtttttggaaatgtgacaaaaatatgaacaatcctt |
25057278 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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