View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10319_high_2 (Length: 684)
Name: NF10319_high_2
Description: NF10319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10319_high_2 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 647; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 647; E-Value: 0
Query Start/End: Original strand, 10 - 684
Target Start/End: Original strand, 35187813 - 35188487
Alignment:
| Q |
10 |
gaagcataggacatttatgaagtaagctcaacagaaaactcaagctgaaagagggcagaatgacctctagatgaagcaaatagcgaaattccgagagatc |
109 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35187813 |
gaagcataggacatttatgaagtaagctcaacagaaaactcaagctgaaagagggcagaatgacctctagatgaagcaaatagcgaaattccgagagatc |
35187912 |
T |
|
| Q |
110 |
cataacaggggcagcaaatagccactgcttgtacacagacaacagtaagtgcttatgtaatattagcataaaactacatataatacaaataatgaaaact |
209 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35187913 |
cataacaggggcagcaaatagccactgcttgtacacagacaacagtaagtgcttatgtaatattagcataaaactacatataatacaaataatgaaaaca |
35188012 |
T |
|
| Q |
210 |
taactcaccttggttgttgataaacgcaacactagatgtttaattctagagagagctcggaagagatcgaataaagggtcgacagattcattttcaggag |
309 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35188013 |
taactcaccttggttgttgataaacacaacactagatgtttaattctagagagagctcggaagagatcgaataaagggtcgacagattcattttcaggag |
35188112 |
T |
|
| Q |
310 |
tggaaaatacatcaagatatgcttcttccacttggtctaagttcccaactgtgacagcatcgccaaatgtgatattggtgaggctaagatacttgagacc |
409 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
35188113 |
tggaaaatacatcaagatatgcttcttccacttggtctaagttcccaactgtggcagcatcgccaaatgtgatattgacgaggctaagatacttgagacc |
35188212 |
T |
|
| Q |
410 |
tggtgcatctatctcaaggtaggccccaaagttgttctcaacggtgaatttcaacctcttcaaggaaggtggcacacgaagtctggccaaacgatcagga |
509 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35188213 |
tggtgcgtctatctcaaggtaggccccaaagttgttctcaacggtgaatttcaacctcttcaaggaaggtggcacacgaagtctggccaaacgatcagga |
35188312 |
T |
|
| Q |
510 |
gaaatggaaagttctagtgtctcgaggatgggacagcttgagagtaggttatccatggaattcatttcaacataaccaatgtctagttgcagcttcttca |
609 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35188313 |
gaaatggaaagttctagtgtctcgaggatgggacagcttgagagtaggttatccatggaattcatttcaacataaccaatgtctagttgcagcttcttca |
35188412 |
T |
|
| Q |
610 |
atgttggtaagaaaaacgctgaagagcgttccaataccacgtagatatcaccacagagactgggatacgtaagca |
684 |
Q |
| |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35188413 |
atgatggtaagaaaaacgctgaagagcgttccaataccacgtagatatcaccacagagactgggatacgtaagca |
35188487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 75; Significance: 3e-34; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 234 - 612
Target Start/End: Original strand, 20513762 - 20514146
Alignment:
| Q |
234 |
cgcaacactagatgtttaattctagagagagctcggaagagatcgaataaagggtcgacagattca------ttttcaggagtggaaaatacatcaagat |
327 |
Q |
| |
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||||| |||||| ||||||||| || ||||||| ||| |||| || ||||||||| || |||||| |||||||||||||||||||||||||||| |
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| T |
20513762 |
cgcaatactagacgtttaattccagtgagagcttggaggagaatgagtaaagggtcaaccgattcattttcattttcaggagtggaaaatacatcaagat |
20513861 |
T |
|
| Q |
328 |
atgcttcttccacttggtctaagttcccaactgtgacagcatcgccaaatgtgatattggtgaggctaagatacttgagacctggtgcatctatctcaag |
427 |
Q |
| |
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||||||||| ||| | || ||||||||||| | || ||| | ||||||| || ||||||||||||| || |||||| | |||||||| |||||||| |
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| T |
20513862 |
atgcttctttcacgttgtgcaagttcccaaccgcagcatcattggcaaatgtaattctggtgaggctaaggtatttgagatcgggtgcatcaatctcaag |
20513961 |
T |
|
| Q |
428 |
gtaggccccaaagttgttctcaacggtgaatttcaacctcttcaaggaaggtggcacacgaagtctggccaaacgat-caggagaaatggaaagttctag |
526 |
Q |
| |
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| | || |||| || || ||||| |||| |||||| |||||||||| || ||| |||||||| |||||| | ||| |||||||| || |||||| || |
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| T |
20513962 |
gcaagctccaatgtcattttcaacagtgagtttcaaactcttcaaggtagatggaacacgaagcttggccaga-gatataggagaaaaggcaagttccag |
20514060 |
T |
|
| Q |
527 |
tgtctcgaggatgggacagcttgagagtaggttatccatggaattcatttcaacataaccaatgtctagttgcagcttcttcaatg |
612 |
Q |
| |
|
|| || | ||| || ||||||||||| ||| |||||| ||||||| || |||| |||||||||||||| |||| |||| |||| |
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| T |
20514061 |
ggtttctaagattgggcagcttgagagaaggatatccacagaattcacatccacattaccaatgtctagtttcagcgtctttaatg |
20514146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 179 - 489
Target Start/End: Complemental strand, 26027720 - 26027410
Alignment:
| Q |
179 |
aaaactacatataatacaaataatgaaaacttaactcaccttggttgttgataaacgcaacactagatgtttaattctagagagagctcggaagagatcg |
278 |
Q |
| |
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||||| ||| ||| |||||||||||||||||| | ||||||| || ||||| | | | | ||||||||||||||| || |||||||| | ||||| | |
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| T |
26027720 |
aaaacaacaaatactacaaataatgaaaacttcagtcacctttgtggttgaattatgtagctctagatgtttaattccggaaagagctcgaaggagattg |
26027621 |
T |
|
| Q |
279 |
aataaagggtcgacagattcattttcaggagtggaaaatacatcaagatatgcttcttccacttggtctaagttcccaactgtgacagcatcgccaaatg |
378 |
Q |
| |
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| |||||| || ||||||||| ||| |||||||| ||||||||||||||||||||||||||| || ||||||||||| | | ||||| | |||| |
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| T |
26027620 |
agtaaaggctcaacagattcacttttaggagtgggaaatacatcaagatatgcttcttccacgctgtgcaagttcccaacagccgcggcatcacggaatg |
26027521 |
T |
|
| Q |
379 |
tgatattggtgaggctaagatacttgagacctggtgcatctatctcaaggtaggccccaaagttgttctcaacggtgaatttcaacctcttcaaggaagg |
478 |
Q |
| |
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||||| |||||||| ||||||||||| ||||||||||| ||||| | ||||||| ||| || ||||| |||| ||| |||||||||||||||| |
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| T |
26027520 |
tgatacattcaaggctaaggtacttgagaccaggtgcatctatttcaagccaagccccaacgttattatcaacagtgatttttaacctcttcaaggaaga |
26027421 |
T |
|
| Q |
479 |
tggcacacgaa |
489 |
Q |
| |
|
|||||| |||| |
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|
| T |
26027420 |
tggcacccgaa |
26027410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 243 - 498
Target Start/End: Complemental strand, 24959136 - 24958881
Alignment:
| Q |
243 |
agatgtttaattctagagagagctcggaagagatcgaataaagggtcgacagattcattttcaggagtggaaaatacatcaagatatgcttcttccactt |
342 |
Q |
| |
|
||||||||||||| |||||||||||||| ||||| | |||||| || ||||||||| |||||||||||| || |||||||||| ||||||||||||||| |
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|
| T |
24959136 |
agatgtttaattccagagagagctcggaggagattcagtaaaggttcaacagattcactttcaggagtgggaagtacatcaagaaatgcttcttccactt |
24959037 |
T |
|
| Q |
343 |
ggtctaagttcccaactgtgacagcatcgccaaatgtgatattggtgaggctaagatacttgagacctggtgcatctatctcaaggtaggccccaaagtt |
442 |
Q |
| |
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|| ||||| |||| || | |||| || | ||| | ||||||||||||||| |||||||| | ||||| ||||| |||||| | ||||||| || |
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| T |
24959036 |
tgtgcaagtttccaatagttgctgcatggctgattgtaacattggtgaggctaaggaacttgagatcgggtgcgtctatttcaaggcaagccccaacttt |
24958937 |
T |
|
| Q |
443 |
gttctcaacggtgaatttcaacctcttcaaggaaggtggcacacgaagtctggcca |
498 |
Q |
| |
|
||||||| | | |||||||||||| ||||||| ||| || |||||| |||||| |
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| T |
24958936 |
agtctcaaccataattttcaacctctttaaggaagttgggacccgaagtatggcca |
24958881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 316 - 500
Target Start/End: Complemental strand, 24935223 - 24935039
Alignment:
| Q |
316 |
atacatcaagatatgcttcttccacttggtctaagttcccaactgtgacagcatcgccaaatgtgatattggtgaggctaagatacttgagacctggtgc |
415 |
Q |
| |
|
||||||| ||||||||||||||||| | || ||||||||||| | ||||||| |||||||||| |||||||||| ||||||||||| ||||| |
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| T |
24935223 |
atacatcgagatatgcttcttccacgttgtgaaagttcccaacagcagtggcatcgcagaatgtgatatgtttgaggctaaggtacttgagaccaggtgc |
24935124 |
T |
|
| Q |
416 |
atctatctcaaggtaggccccaaagttgttctcaacggtgaatttcaacctcttcaaggaaggtggcacacgaagtctggccaaa |
500 |
Q |
| |
|
||||| ||||| | ||||||| | |||||||| |||| ||| |||||||||||||||| |||||| |||| | |||||||| |
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|
| T |
24935123 |
gtctatttcaagcaaagccccaacatcattctcaacagtgatttttaacctcttcaaggaagatggcacccgaattatggccaaa |
24935039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 232 - 427
Target Start/End: Original strand, 24952246 - 24952435
Alignment:
| Q |
232 |
aacgcaacactagatgtttaattctagagagagctcggaagagatcgaataaagggtcgacagattcattttcaggagtggaaaatacatcaagatatgc |
331 |
Q |
| |
|
|||| ||||||||| ||||||| | |||||||||| ||| |||| || ||||||||| ||||||||| |||||| || || ||||||||||||| |
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|
| T |
24952246 |
aacgaaacactagacgtttaatgccagagagagcttggaggagagtgagtaaagggtcaacagattcactttcagaagagg------catcaagatatgc |
24952339 |
T |
|
| Q |
332 |
ttcttccacttggtctaagttcccaactgtgacagcatcgccaaatgtgatattggtgaggctaagatacttgagacctggtgcatctatctcaag |
427 |
Q |
| |
|
||| ||||| | || |||||||||| | |||| ||||||||||||||||||||||||||| ||||||||||| |||| || |||||||| |
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|
| T |
24952340 |
ttcctccacgttgtgcaagttcccaatagaagtggcattgccaaatgtgatattggtgaggctaaggtacttgagaccaggtgtgtcaatctcaag |
24952435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 241 - 340
Target Start/End: Complemental strand, 24530644 - 24530545
Alignment:
| Q |
241 |
ctagatgtttaattctagagagagctcggaagagatcgaataaagggtcgacagattcattttcaggagtggaaaatacatcaagatatgcttcttccac |
340 |
Q |
| |
|
|||||||||||| || ||||||||| |||| ||| | || |||||| || ||||||||| | |||||| ||||||| ||||||| |||||||||||| |
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|
| T |
24530644 |
ctagatgtttaagtccagagagagcacggaggagtttgagtaaaggttcaacagattcactatcaggatgagaaaataggtcaagatctgcttcttccac |
24530545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 307 - 438
Target Start/End: Complemental strand, 40586388 - 40586257
Alignment:
| Q |
307 |
gagtggaaaatacatcaagatatgcttcttccacttggtctaagttcccaactgtgacagcatcgccaaatgtgatattggtgaggctaagatacttgag |
406 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| | || ||||||||||| | |||||| ||| ||||||||||||||||||| |||||||| |
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| T |
40586388 |
gagtggaaaatacatcaagatgtgcttcttccacattgtgcaagttcccaacagaagcagcattaagaaacatgatattggtgaggctaaggtacttgag |
40586289 |
T |
|
| Q |
407 |
acctggtgcatctatctcaaggtaggccccaa |
438 |
Q |
| |
|
| | || || ||||| |||||||| ||||||| |
|
|
| T |
40586288 |
atcaggagcgtctatttcaaggtaagccccaa |
40586257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 242 - 336
Target Start/End: Original strand, 11297514 - 11297608
Alignment:
| Q |
242 |
tagatgtttaattctagagagagctcggaagagatcgaataaagggtcgacagattcattttcaggagtggaaaatacatcaagatatgcttctt |
336 |
Q |
| |
|
|||||||||||||| |||||||||| ||| ||||| || |||| || ||||||||| |||||||||||||||| || ||||||||||||||| |
|
|
| T |
11297514 |
tagatgtttaattccagagagagcttggaggagattgagtaaacggaaaacagattcactttcaggagtggaaaactcagcaagatatgcttctt |
11297608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 75 - 175
Target Start/End: Original strand, 11297331 - 11297431
Alignment:
| Q |
75 |
tctagatgaagcaaatagcgaaattccgagagatccataacaggggcagcaaatagccactgcttgtacacagacaacagtaagtgcttatgtaatatta |
174 |
Q |
| |
|
|||||||| |||| ||||| |||||| | | ||| | || ||||||| | ||||||| ||||||||||||| ||||||| ||||| ||||||||||||| |
|
|
| T |
11297331 |
tctagatgcagcagatagcaaaattctggaaaatctaaaaaaggggcatctaatagcctctgcttgtacacacacaacagcaagtgattatgtaatatta |
11297430 |
T |
|
| Q |
175 |
g |
175 |
Q |
| |
|
| |
|
|
| T |
11297431 |
g |
11297431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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