View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10319_high_29 (Length: 256)

Name: NF10319_high_29
Description: NF10319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10319_high_29
NF10319_high_29
[»] chr8 (6 HSPs)
chr8 (10-170)||(44083524-44083684)
chr8 (96-170)||(40471279-40471353)
chr8 (96-170)||(15148181-15148255)
chr8 (95-170)||(40467289-40467365)
chr8 (95-147)||(23941804-23941856)
chr8 (99-170)||(27083076-27083148)
[»] chr3 (9 HSPs)
chr3 (10-170)||(17605334-17605494)
chr3 (29-170)||(45683641-45683784)
chr3 (10-170)||(42675950-42676112)
chr3 (26-170)||(20823025-20823164)
chr3 (96-170)||(36708351-36708425)
chr3 (10-170)||(15484295-15484457)
chr3 (96-170)||(18369556-18369630)
chr3 (95-170)||(38926249-38926324)
chr3 (93-129)||(54440714-54440750)
[»] chr7 (9 HSPs)
chr7 (10-170)||(18766876-18767036)
chr7 (47-170)||(25185732-25185855)
chr7 (89-170)||(15765488-15765569)
chr7 (10-170)||(8770900-8771062)
chr7 (10-170)||(41800921-41801083)
chr7 (10-170)||(34458670-34458832)
chr7 (108-170)||(48620203-48620265)
chr7 (100-170)||(18670636-18670706)
chr7 (94-129)||(6909556-6909591)
[»] chr5 (11 HSPs)
chr5 (13-170)||(11817258-11817415)
chr5 (10-170)||(38356938-38357095)
chr5 (10-170)||(3169037-3169198)
chr5 (10-170)||(19182345-19182501)
chr5 (10-170)||(2893655-2893816)
chr5 (10-170)||(34311664-34311826)
chr5 (10-169)||(12904383-12904544)
chr5 (117-170)||(29740746-29740799)
chr5 (10-106)||(29736149-29736246)
chr5 (96-170)||(35055471-35055545)
chr5 (96-170)||(35072213-35072287)
[»] scaffold0006 (1 HSPs)
scaffold0006 (10-169)||(41601-41763)
[»] chr2 (8 HSPs)
chr2 (10-170)||(28401062-28401224)
chr2 (26-170)||(16212651-16212797)
chr2 (10-170)||(37642964-37643126)
chr2 (187-240)||(9788523-9788576)
chr2 (27-170)||(16084093-16084238)
chr2 (95-170)||(36069551-36069627)
chr2 (95-170)||(35487308-35487383)
chr2 (134-170)||(3952772-3952808)
[»] chr6 (10 HSPs)
chr6 (89-170)||(1550806-1550887)
chr6 (10-170)||(6004434-6004596)
chr6 (10-170)||(6007964-6008126)
chr6 (82-170)||(21548314-21548403)
chr6 (10-170)||(26010338-26010500)
chr6 (10-170)||(24378243-24378405)
chr6 (96-170)||(9564836-9564907)
chr6 (95-170)||(23066650-23066726)
chr6 (95-170)||(31297749-31297825)
chr6 (95-170)||(11454552-11454628)
[»] chr4 (4 HSPs)
chr4 (14-170)||(46639506-46639664)
chr4 (10-170)||(55223117-55223279)
chr4 (10-170)||(26693394-26693555)
chr4 (96-170)||(50451546-50451620)
[»] chr1 (2 HSPs)
chr1 (14-170)||(43510306-43510464)
chr1 (95-170)||(34854239-34854314)
[»] scaffold0014 (1 HSPs)
scaffold0014 (10-170)||(72215-72377)


Alignment Details
Target: chr8 (Bit Score: 141; Significance: 5e-74; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 10 - 170
Target Start/End: Original strand, 44083524 - 44083684
Alignment:
Q  10 gcagagatggtgttccgacccttttgcttgtttggggttgactacctagtgtaaacctctgtttgttgttacttaaactcttgtatttttagtggtatcc 109  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44083524 gcagagatggtggtccgacccttttgcttgtttggggttgactacctagtgtaaacctctgtttgttgttacttaaactcttgtatttttagtggtatcc 44083623  T
Q  110 taggcacaccttgtgcttggatattgctgtttgatgtgttatataatttcattttgatttc 170  Q
    |||||||||||| || ||||||||||||||||| ||||||||||||||| |||||||||||    
T  44083624 taggcacaccttatgtttggatattgctgtttggtgtgttatataattttattttgatttc 44083684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 96 - 170
Target Start/End: Original strand, 40471279 - 40471353
Alignment:
Q  96 ttttagtggtatcctaggcacaccttgtgcttggatattgctgtttgatgtgttatataatttcattttgatttc 170  Q
    |||||||||||||||||||| |||||||| |||||||||||||| || |||||||||||||||||||||||||||    
T  40471279 ttttagtggtatcctaggcataccttgtgtttggatattgctgtgtggtgtgttatataatttcattttgatttc 40471353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 96 - 170
Target Start/End: Original strand, 15148181 - 15148255
Alignment:
Q  96 ttttagtggtatcctaggcacaccttgtgcttggatattgctgtttgatgtgttatataatttcattttgatttc 170  Q
    |||||||||||||||||||||| ||| |||||||| ||||||||||| ||||||||||||||||||||| |||||    
T  15148181 ttttagtggtatcctaggcacatcttatgcttggaaattgctgtttggtgtgttatataatttcattttaatttc 15148255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 95 - 170
Target Start/End: Complemental strand, 40467365 - 40467289
Alignment:
Q  95 tttttagtggtatcctaggcacaccttgtgcttggatattgctgtttgatgt-gttatataatttcattttgatttc 170  Q
    ||||||||||| || ||||||||||||||||||||  | ||||| ||| ||| ||||||||||||||||||||||||    
T  40467365 tttttagtggtctcataggcacaccttgtgcttgggaactgctgattgttgtggttatataatttcattttgatttc 40467289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 147
Target Start/End: Complemental strand, 23941856 - 23941804
Alignment:
Q  95 tttttagtggtatcctaggcacaccttgtgcttggatattgctgtttgatgtg 147  Q
    ||||||||||| ||||||||||||||||||| |||| | |||| |||| ||||    
T  23941856 tttttagtggtctcctaggcacaccttgtgcatggaaactgctttttgttgtg 23941804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 170
Target Start/End: Complemental strand, 27083148 - 27083076
Alignment:
Q  99 tagtggtatcctaggcacaccttgtgcttggatattgctgtttgatg-tgttatataatttcattttgatttc 170  Q
    ||||||| |||||||||||||||||||||||  | |||| |||  || |||||||||||| ||||||| ||||    
T  27083148 tagtggtctcctaggcacaccttgtgcttgggaactgctctttactgttgttatataattccattttggtttc 27083076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 141; Significance: 5e-74; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 10 - 170
Target Start/End: Original strand, 17605334 - 17605494
Alignment:
Q  10 gcagagatggtgttccgacccttttgcttgtttggggttgactacctagtgtaaacctctgtttgttgttacttaaactcttgtatttttagtggtatcc 109  Q
    |||||||||||| || |||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  17605334 gcagagatggtggtctgacccttttgcttgtttggggttgactaactagtgtaaacctctgtttgttgtttcttaaactcttgtatttttagtggtatcc 17605433  T
Q  110 taggcacaccttgtgcttggatattgctgtttgatgtgttatataatttcattttgatttc 170  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  17605434 taggcacaccttgtgcttggatattgctgtttggtgtgttatataatttcattttgatttc 17605494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 29 - 170
Target Start/End: Complemental strand, 45683784 - 45683641
Alignment:
Q  29 ccttttgcttgtttggggttgactacctagtgtaaacctctgttt-gttgt-tacttaaactcttgtat-ttttagtggtatcctaggcacaccttgtgc 125  Q
    ||||||||||||||||| ||||||| ||||||||| | ||||||| ||||| | ||| ||||||||||  ||||||||||||||||||||||||||||||    
T  45683784 ccttttgcttgtttgggtttgactatctagtgtaatc-tctgttttgttgtgttctttaactcttgtaacttttagtggtatcctaggcacaccttgtgc 45683686  T
Q  126 ttggatattgctgtttgatgtgttatataatttcattttgatttc 170  Q
    |||||||||||||| || |||||||||||||||||||||||||||    
T  45683685 ttggatattgctgtgtggtgtgttatataatttcattttgatttc 45683641  T

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Target: chr3; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 10 - 170
Target Start/End: Original strand, 42675950 - 42676112
Alignment:
Q  10 gcagagatggtgttccgacccttttgcttgtttggggttgactacctagtgtaaacctctgtttgttgt--tacttaaactcttgtat-ttttagtggta 106  Q
    |||||||||||| || ||||||||||||||||| || ||| ||| ||||||| | | |||| |||||||  |  |||||||||||||  ||||||||||     
T  42675950 gcagagatggtggtcagacccttttgcttgtttaggcttggctagctagtgttatc-tctggttgttgtattttttaaactcttgtaacttttagtggtt 42676048  T
Q  107 tcctaggcacaccttgtgcttggatattgctgtttgatgtgttatataatttcattttgatttc 170  Q
    |||||||||||||||||||||||  | ||||||||| |||||||| ||||| ||||||||||||    
T  42676049 tcctaggcacaccttgtgcttggggactgctgtttggtgtgttatttaattccattttgatttc 42676112  T

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Target: chr3; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 26 - 170
Target Start/End: Original strand, 20823025 - 20823164
Alignment:
Q  26 gacccttttgcttgtttggggttgactacctagtgtaaacctctgtttgttgt-tacttaaactcttgtatttttagtggtatcctaggcacaccttgtg 124  Q
    |||||||| ||||||||||| ||| ||||||||||| || ||||||||||||| |  ||||||||||||||     ||||||||||||||||| ||||||    
T  20823025 gaccctttggcttgtttgggcttggctacctagtgt-aatctctgtttgttgtattattaaactcttgtat-----gtggtatcctaggcacatcttgtg 20823118  T
Q  125 cttggatattgctgtttgatgtgttatataatttcattttgatttc 170  Q
    |||||    ||||| ||| ||| |||||||||||||||||||||||    
T  20823119 cttgggatctgctggttggtgtattatataatttcattttgatttc 20823164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 96 - 170
Target Start/End: Complemental strand, 36708425 - 36708351
Alignment:
Q  96 ttttagtggtatcctaggcacaccttgtgcttggatattgctgtttgatgtgttatataatttcattttgatttc 170  Q
    ||||||||||||||||||||||| ||||||||||  | ||||| ||| |||||||||||||||||||||||||||    
T  36708425 ttttagtggtatcctaggcacacattgtgcttgggaactgctgcttggtgtgttatataatttcattttgatttc 36708351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 10 - 170
Target Start/End: Original strand, 15484295 - 15484457
Alignment:
Q  10 gcagagatggtgttccgacccttttgcttgtttgggg-ttgactacctagtgtaaacctctgtttgttgtta-cttaaactcttgtat-ttttagtggta 106  Q
    |||||||||||| ||   |||||| |||||||||||  ||||||| ||||||||| | ||  |||||||| | | | ||||||||||  |||||||||||    
T  15484295 gcagagatggtggtcaagccctttagcttgtttgggcattgactaactagtgtaatc-tcgatttgttgtgatcattaactcttgtaacttttagtggta 15484393  T
Q  107 tcctaggcacaccttgtgcttggatattgctgtttgatgtgttatataatttcattttgatttc 170  Q
    ||||||||||| |||||||||||  | ||||| |||||||| |||||||||||||||| |||||    
T  15484394 tcctaggcacatcttgtgcttgggaactgctgcttgatgtggtatataatttcattttaatttc 15484457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 96 - 170
Target Start/End: Original strand, 18369556 - 18369630
Alignment:
Q  96 ttttagtggtatcctaggcacaccttgtgcttggatattgctgtttgatgtgttatataatttcattttgatttc 170  Q
    ||||||||||||| |||||||||||| |||||||  ||||||||||| | || ||||||||||||||||||||||    
T  18369556 ttttagtggtatcttaggcacaccttatgcttgggaattgctgtttggtatgatatataatttcattttgatttc 18369630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 170
Target Start/End: Complemental strand, 38926324 - 38926249
Alignment:
Q  95 tttttagtggtatcctaggcacaccttgtgcttggatattgctgtttgatgt-gttatataatttcattttgatttc 170  Q
    ||||||||||| ||||||||| ||||| |||||||| | ||||| ||| ||| || |||||||||| ||||||||||    
T  38926324 tttttagtggtctcctaggcataccttatgcttggaaactgctgattgttgtggtaatataatttc-ttttgatttc 38926249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 129
Target Start/End: Original strand, 54440714 - 54440750
Alignment:
Q  93 tatttttagtggtatcctaggcacaccttgtgcttgg 129  Q
    ||||| ||||||| |||||||||||||||||||||||    
T  54440714 tatttgtagtggtttcctaggcacaccttgtgcttgg 54440750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 137; Significance: 1e-71; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 10 - 170
Target Start/End: Complemental strand, 18767036 - 18766876
Alignment:
Q  10 gcagagatggtgttccgacccttttgcttgtttggggttgactacctagtgtaaacctctgtttgttgttacttaaactcttgtatttttagtggtatcc 109  Q
    |||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||    
T  18767036 gcagagatggtggtccaacccttttgcttgtttggggttgactacctagtgtaaacctctgtttgttgttccttaaactcttgtatttttagtagtatcc 18766937  T
Q  110 taggcacaccttgtgcttggatattgctgtttgatgtgttatataatttcattttgatttc 170  Q
    ||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||    
T  18766936 taggcacaccttgtgcttggatattgctgtttggtatgttatataatttcattttgatttc 18766876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 47 - 170
Target Start/End: Original strand, 25185732 - 25185855
Alignment:
Q  47 ttgactacctagtgtaaacctctgtttgttgttacttaaactcttgtatttttagtggtatcctaggcacaccttgtgcttggatattgctgtttgatgt 146  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  25185732 ttgactacctagtgtaaacctctgtttgttgttacttaaactcttgtatttttagtggtatcctaggcacaccttgtgcttggatattgctgtttggtgt 25185831  T
Q  147 gttatataatttcattttgatttc 170  Q
    ||||||||||||||||||||||||    
T  25185832 gttatataatttcattttgatttc 25185855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 89 - 170
Target Start/End: Original strand, 15765488 - 15765569
Alignment:
Q  89 cttgtatttttagtggtatcctaggcacaccttgtgcttggatattgctgtttgatgtgttatataatttcattttgatttc 170  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  15765488 cttgtatttttagtggtatcctaggcacaccttgtgcttggatattgctgtttggtgtgttatataatttcattttgatttc 15765569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 10 - 170
Target Start/End: Complemental strand, 8771062 - 8770900
Alignment:
Q  10 gcagagatggtgttccgacccttttgcttgtttggggttgactacctagtgtaaacctctgttt-gttgt-tacttaaactcttgtatttt-tagtggta 106  Q
    |||||||||||| || || ||||||||||||||||| ||||||| ||||||||| | ||||||| ||||| | ||| ||||||||||  || ||||||||    
T  8771062 gcagagatggtggtcagatccttttgcttgtttgggtttgactatctagtgtaatc-tctgttttgttgtgttctttaactcttgtaacttctagtggta 8770964  T
Q  107 tcctaggcacaccttgtgcttggatattgctgtttgatgtgttatataatttcattttgatttc 170  Q
    ||||||||| ||||| ||||||||||||||||| || |||||||||||||||||||||||||||    
T  8770963 tcctaggcataccttatgcttggatattgctgtgtggtgtgttatataatttcattttgatttc 8770900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 10 - 170
Target Start/End: Complemental strand, 41801083 - 41800921
Alignment:
Q  10 gcagagatggtgttccgacccttttgcttgtttggggttgactacctagtgtaaacctctgtttgttgt--tacttaaactcttgtat-ttttagtggta 106  Q
    |||||||||||| || ||||||||||||||||| || ||| ||| ||||||| | | |||| |||||||  |  |||||||||||||  ||||||||||     
T  41801083 gcagagatggtggtcagacccttttgcttgtttaggcttggctagctagtgttatc-tctggttgttgtattttttaaactcttgtaacttttagtggtt 41800985  T
Q  107 tcctaggcacaccttgtgcttggatattgctgtttgatgtgttatataatttcattttgatttc 170  Q
    ||||| |||||||||||||||||  | ||||||||| |||||||| ||||| ||||||||||||    
T  41800984 tcctaagcacaccttgtgcttggggactgctgtttggtgtgttatttaattccattttgatttc 41800921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 10 - 170
Target Start/End: Original strand, 34458670 - 34458832
Alignment:
Q  10 gcagagatggtgttccgacccttttgcttgtttggggttgactacctagtgtaaacctctgtttgttgt--tacttaaactcttgtat-ttttagtggta 106  Q
    |||||||||||| ||  ||| |||||||||||| || ||| ||| ||||||| | | |||| |||||||  |  |||||||||||||  ||||||||||     
T  34458670 gcagagatggtggtcataccattttgcttgtttaggcttggctagctagtgttatc-tctggttgttgtattctttaaactcttgtaacttttagtggtt 34458768  T
Q  107 tcctaggcacaccttgtgcttggatattgctgtttgatgtgttatataatttcattttgatttc 170  Q
    |||||||||||||||||||||||  | ||||||||| |||||||| ||||| ||||||||||||    
T  34458769 tcctaggcacaccttgtgcttgggaactgctgtttggtgtgttatttaattccattttgatttc 34458832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 108 - 170
Target Start/End: Original strand, 48620203 - 48620265
Alignment:
Q  108 cctaggcacaccttgtgcttggatattgctgtttgatgtgttatataatttcattttgatttc 170  Q
    |||| ||| ||||||||||||||||||||||| || |||||||||||||||||||||||||||    
T  48620203 cctaagcataccttgtgcttggatattgctgtatggtgtgttatataatttcattttgatttc 48620265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 100 - 170
Target Start/End: Complemental strand, 18670706 - 18670636
Alignment:
Q  100 agtggtatcctaggcacaccttgtgcttggatattgctgtttgatgtgttatataatttcattttgatttc 170  Q
    |||||| |||| ||||||||||||||||||  | ||||| ||| |||| ||||||||||||||||||||||    
T  18670706 agtggtttccttggcacaccttgtgcttgggaactgctgcttggtgtgatatataatttcattttgatttc 18670636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 94 - 129
Target Start/End: Complemental strand, 6909591 - 6909556
Alignment:
Q  94 atttttagtggtatcctaggcacaccttgtgcttgg 129  Q
    |||||||||||| |||||||||||||||||||||||    
T  6909591 atttttagtggtctcctaggcacaccttgtgcttgg 6909556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 130; Significance: 2e-67; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 13 - 170
Target Start/End: Complemental strand, 11817415 - 11817258
Alignment:
Q  13 gagatggtgttccgacccttttgcttgtttggggttgactacctagtgtaaacctctgtttgttgttacttaaactcttgtatttttagtggtatcctag 112  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  11817415 gagatggtggtccgacccttttgcttgtttggggttgactacctagtgtaaacctctgtttgttgttccttaaactcttgtatttttagtggtatcctag 11817316  T
Q  113 gcacaccttgtgcttggatattgctgtttgatgtgttatataatttcattttgatttc 170  Q
    ||||||||| |||||||| ||||||||||| |||||||| || |||||||||||||||    
T  11817315 gcacaccttatgcttggacattgctgtttggtgtgttatttattttcattttgatttc 11817258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 10 - 170
Target Start/End: Complemental strand, 38357095 - 38356938
Alignment:
Q  10 gcagagatggtgttccgacccttttgcttgtttggggttgactacctagtgtaaacctctgtttgttgttacttaaactcttgtatttttagtggtatcc 109  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |    
T  38357095 gcagagatggtggtccgacccttttgcttgtttggggttgactacctagtgtaaacctctgtttgttgttacttaaactcttgta-ttttagtggtattc 38356997  T
Q  110 taggcacaccttgtgcttggatattgctgtttgatgtgttatataatttcattttgatttc 170  Q
    |||||||||||||||||||| ||||||||||||  ||||||||||||||||||||||||||    
T  38356996 taggcacaccttgtgcttgggtattgctgtttg--gtgttatataatttcattttgatttc 38356938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 10 - 170
Target Start/End: Original strand, 3169037 - 3169198
Alignment:
Q  10 gcagagatggtgttccgacccttttgcttgtttggggttgactacctagtgtaaacctctgtttgttgt-tacttaaactcttgtattt-ttagtggtat 107  Q
    ||||||||| || || || ||||||||||||||||| ||||||| |||||||||   |||||||||||| | ||||||| |||||| || ||||||||||    
T  3169037 gcagagatgatggtcagatccttttgcttgtttgggtttgactaactagtgtaata-tctgtttgttgtgttcttaaacccttgtaattcttagtggtat 3169135  T
Q  108 cctaggcacaccttgtgcttggatattgctgtttgatgtgttatataatttcattttgatttc 170  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  3169136 cctaggcacaccttgtgcttggatattgctgtttggtgtgttatataatttcattttgatttc 3169198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 10 - 170
Target Start/End: Original strand, 19182345 - 19182501
Alignment:
Q  10 gcagagatggtgttccgacccttttgcttgtttggggttgactacctagtgtaaacctctgtttgttgt-tacttaaactcttgta-tttttagtggtat 107  Q
    |||||||||||| || || | ||||||||||||| | ||||||| ||||||||| | |||||||||||| | |||||||||||||| |||||||||||||    
T  19182345 gcagagatggtggtcagatcattttgcttgtttgagtttgactaactagtgtaatc-tctgtttgttgtgttcttaaactcttgtaatttttagtggtat 19182443  T
Q  108 cctaggcacaccttgtgcttggatattgctgtttgatgtgttatataatttcattttgatttc 170  Q
    |||||||||||||||||||||||| ||||||     |||||||| ||||||||||||||||||    
T  19182444 cctaggcacaccttgtgcttggatgttgctg-----tgtgttatttaatttcattttgatttc 19182501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 10 - 170
Target Start/End: Complemental strand, 2893816 - 2893655
Alignment:
Q  10 gcagagatggtgttccgacccttttgcttgtttggggttgactacctagtgtaaacctctgtttgttgt--tacttaaactcttgtat-ttttagtggta 106  Q
    |||||||||||| || ||||||||||||||||| || ||| ||| ||||||| | | |||| |||||||  |  |||||||||||||  ||||||||||     
T  2893816 gcagagatggtggtc-gacccttttgcttgtttaggtttggctagctagtgttatc-tctggttgttgtattttttaaactcttgtaacttttagtggtt 2893719  T
Q  107 tcctaggcacaccttgtgcttggatattgctgtttgatgtgttatataatttcattttgatttc 170  Q
    |||||||||||||||||||||||  | ||||||||| |||||||| ||||| ||||||||||||    
T  2893718 tcctaggcacaccttgtgcttgggaactgctgtttggtgtgttatttaattccattttgatttc 2893655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 10 - 170
Target Start/End: Complemental strand, 34311826 - 34311664
Alignment:
Q  10 gcagagatggtgttccgacccttttgcttgtttggggtt-gactacctagtgtaaacctctgtttgttgtta-cttaaactcttgtat-ttttagtggta 106  Q
    |||||||||||| ||  ||||||| |||||||| || || | ||| |||||||||   |||||||||||| | | | ||||||||||  |||||||||||    
T  34311826 gcagagatggtggtcaaaccctttagcttgtttaggctttggctaactagtgtaata-tctgtttgttgtgatcattaactcttgtaacttttagtggta 34311728  T
Q  107 tcctaggcacaccttgtgcttggatattgctgtttgatgtgttatataatttcattttgatttc 170  Q
    |||||| ||||||||||||||||  | ||||| ||| ||||||||||||||||||||| |||||    
T  34311727 tcctagacacaccttgtgcttgggaactgctgcttggtgtgttatataatttcattttaatttc 34311664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 10 - 169
Target Start/End: Complemental strand, 12904544 - 12904383
Alignment:
Q  10 gcagagatggtgttccgacccttttgcttgtttggggttgactacctagtgtaaacctctgtttgttgt--tacttaaactcttgtat-ttttagtggta 106  Q
    ||||||||| || || ||||||||||||||||| || ||| ||| ||||||| | | |||| |||||||  |  |||||||||||||  |||||||||      
T  12904544 gcagagatgatggtcagacccttttgcttgtttaggcttggctagctagtgttatc-tctgattgttgtattttttaaactcttgtaacttttagtgggt 12904446  T
Q  107 tcctaggcacaccttgtgcttggatattgctgtttgatgtgttatataatttcattttgattt 169  Q
    ||||| ||||||||| |||||||  | ||||||||| |||||||| ||||| |||||||||||    
T  12904445 tcctaagcacaccttatgcttggggactgctgtttggtgtgttatttaattccattttgattt 12904383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 117 - 170
Target Start/End: Original strand, 29740746 - 29740799
Alignment:
Q  117 accttgtgcttggatattgctgtttgatgtgttatataatttcattttgatttc 170  Q
    ||||| |||||||||||| ||||||| |||||||||||||||||||||||||||    
T  29740746 accttatgcttggatattactgtttggtgtgttatataatttcattttgatttc 29740799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 10 - 106
Target Start/End: Original strand, 29736149 - 29736246
Alignment:
Q  10 gcagagatggtgttccgacccttttgcttgtttggggttgactacctagtgtaaacctctgtttgttgt-tacttaaactcttgt-atttttagtggta 106  Q
    |||||||||||| || || ||||||||||||||||| ||||||| ||||||| ||  ||| |||||||| | ||||||||||||| |||||||||||||    
T  29736149 gcagagatggtggtcagatccttttgcttgtttgggtttgactaactagtgt-aatatctctttgttgtgttcttaaactcttgtaatttttagtggta 29736246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 96 - 170
Target Start/End: Complemental strand, 35055545 - 35055471
Alignment:
Q  96 ttttagtggtatcctaggcacaccttgtgcttggatattgctgtttgatgtgttatataatttcattttgatttc 170  Q
    ||||||||||||| ||||||||||||||||||||  | | | | ||| |||| ||||||||||||||||||||||    
T  35055545 ttttagtggtatcttaggcacaccttgtgcttgggaactacggcttggtgtggtatataatttcattttgatttc 35055471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 96 - 170
Target Start/End: Complemental strand, 35072287 - 35072213
Alignment:
Q  96 ttttagtggtatcctaggcacaccttgtgcttggatattgctgtttgatgtgttatataatttcattttgatttc 170  Q
    ||||||||||||| ||||||||||||||||||||  | | | | ||| |||| ||||||||||||||||||||||    
T  35072287 ttttagtggtatcttaggcacaccttgtgcttgggaactacggcttggtgtggtatataatttcattttgatttc 35072213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 108; Significance: 2e-54; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 10 - 169
Target Start/End: Complemental strand, 41763 - 41601
Alignment:
Q  10 gcagagatggtgttccgacccttttgcttgtttggggttgactacctagtgtaaacctctgtttgttgt--tacttaaactcttgtattt-ttagtggta 106  Q
    |||||||||||| ||||| ||||||||||||||||||||||||| ||||||||| ||||||||||||||  |  |||||||||||||||| |||||| ||    
T  41763 gcagagatggtggtccgatccttttgcttgtttggggttgactaactagtgtaatcctctgtttgttgtgttctttaaactcttgtatttattagtgata 41664  T
Q  107 tcctaggcacaccttgtgcttggatattgctgtttgatgtgttatataatttcattttgattt 169  Q
    |||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||    
T  41663 tcctaggcacaccttgtgcttggatattactgtttggtgtgttatataatttcattttgattt 41601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 84; Significance: 5e-40; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 10 - 170
Target Start/End: Original strand, 28401062 - 28401224
Alignment:
Q  10 gcagagatggtgttccgacccttttgcttgtttggggttgactacctagtgtaaac-ctctgtttgttgt-tacttaaactcttgtat-ttttagtggta 106  Q
    |||||||||||| || || ||||||||||||||||| ||||||| ||||||||| | |||| |||||||| | ||| ||||||||||  |||||||||||    
T  28401062 gcagagatggtggtcagatccttttgcttgtttgggtttgactatctagtgtaatctctct-tttgttgtgttctttaactcttgtaacttttagtggta 28401160  T
Q  107 tcctaggcacaccttgtgcttggatattgctgtttgatgtgttatataatttcattttgatttc 170  Q
    ||||||||| ||||||||||||||||||||||| || |||||||||||||||||||||||||||    
T  28401161 tcctaggcataccttgtgcttggatattgctgtgtggtgtgttatataatttcattttgatttc 28401224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 26 - 170
Target Start/End: Complemental strand, 16212797 - 16212651
Alignment:
Q  26 gacccttttgcttgtttggggtt-gactacctagtgtaaacctctgtttgttgt-tacttaaactcttgtat-ttttagtggtatcctaggcacaccttg 122  Q
    |||| ||||||||||||| | || | ||| ||||||||| |||||||||||||| ||||||||||||||||  |||||||||||||||||||| ||||||    
T  16212797 gaccattttgcttgtttgagctttggctaactagtgtaa-cctctgtttgttgtatacttaaactcttgtaacttttagtggtatcctaggcagaccttg 16212699  T
Q  123 tgcttggatattgctgtttgatgtgttatataatttcattttgatttc 170  Q
    |||||||| | ||||| ||| |||||||||||||||||||||||||||    
T  16212698 tgcttggaaactgctgcttggtgtgttatataatttcattttgatttc 16212651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 10 - 170
Target Start/End: Complemental strand, 37643126 - 37642964
Alignment:
Q  10 gcagagatggtgttccgacccttttgcttgtttggggtt-gactacctagtgtaaacctctgtttgttgt-tacttaaactcttgtat-ttttagtggta 106  Q
    |||||| ||||| || |||||||||||||||||||| || | ||| ||||||||| |||| |||| |||| |||||||| | |||||  |||||||||||    
T  37643126 gcagagttggtggtcagacccttttgcttgtttgggctttggctaactagtgtaa-cctcagtttattgtatacttaaaattttgtaacttttagtggta 37643028  T
Q  107 tcctaggcacaccttgtgcttggatattgctgtttgatgtgttatataatttcattttgatttc 170  Q
    |||||| ||||||||||| ||||| |  |||||||| |||||||||||||||||||||||||||    
T  37643027 tcctagacacaccttgtgtttggaaaccgctgtttggtgtgttatataatttcattttgatttc 37642964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 187 - 240
Target Start/End: Original strand, 9788523 - 9788576
Alignment:
Q  187 tattattataggtaagtgttacgcaactattactctatctaaagagctagtttt 240  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9788523 tattattataggtaagtgttacgcaactattactctatctaaagagctagtttt 9788576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 27 - 170
Target Start/End: Original strand, 16084093 - 16084238
Alignment:
Q  27 acccttttgcttgtttggggtt-gactacctagtgtaaacctctgtttgttgt-tacttaaactcttgta-tttttagtggtatcctaggcacaccttgt 123  Q
    ||||||| ||||||||| | || ||||| ||||||||| |||||||||||||| | ||| |||||||||| ||||||||||||||||||||||| ||| |    
T  16084093 accctttagcttgtttgagctttgactaactagtgtaa-cctctgtttgttgtattctttaactcttgtaatttttagtggtatcctaggcacagcttat 16084191  T
Q  124 gcttggatattgctgtttgatgtgttatataatttcattttgatttc 170  Q
    ||||||  | ||  | ||| ||| |||||||||||||||||||||||    
T  16084192 gcttgggaactgacgcttggtgtattatataatttcattttgatttc 16084238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 95 - 170
Target Start/End: Original strand, 36069551 - 36069627
Alignment:
Q  95 tttttagtggtatcctaggcacaccttgtgcttggatattgctgtttgatgt-gttatataatttcattttgatttc 170  Q
    ||||||||||| |||||||||||||||||||||||  | ||||| ||| ||| || |||||||||||||||||||||    
T  36069551 tttttagtggtctcctaggcacaccttgtgcttgggaactgctgattgttgtggtaatataatttcattttgatttc 36069627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 95 - 170
Target Start/End: Complemental strand, 35487383 - 35487308
Alignment:
Q  95 tttttagtggtatcctaggcacaccttgtgcttggatattgctgtttgatgt-gttatataatttcattttgatttc 170  Q
    ||||||||||| ||||||||||||||| ||||| || | ||||| ||| ||| || |||||||||||||||||||||    
T  35487383 tttttagtggtctcctaggcacaccttatgctttga-actgctgattgttgtggtaatataatttcattttgatttc 35487308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 170
Target Start/End: Complemental strand, 3952808 - 3952772
Alignment:
Q  134 tgctgtttgatgtgttatataatttcattttgatttc 170  Q
    ||||| ||| |||||||||||||||||||||||||||    
T  3952808 tgctgcttggtgtgttatataatttcattttgatttc 3952772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 78; Significance: 2e-36; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 89 - 170
Target Start/End: Complemental strand, 1550887 - 1550806
Alignment:
Q  89 cttgtatttttagtggtatcctaggcacaccttgtgcttggatattgctgtttgatgtgttatataatttcattttgatttc 170  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  1550887 cttgtatttttagtggtatcctaggcacaccttgtgcttggatattgctgtttggtgtgttatataatttcattttgatttc 1550806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 10 - 170
Target Start/End: Complemental strand, 6004596 - 6004434
Alignment:
Q  10 gcagagatggtgttccgacccttttgcttgtttggggttgactacctagtgtaaacctctgtttgttgt--tacttaaactcttgtat-ttttagtggta 106  Q
    |||||||||||| || |||||||||||||||||  | ||| ||| ||||||| | | |||| |||||||  |  |||||||||||||  ||||||||||     
T  6004596 gcagagatggtggtcagacccttttgcttgtttaagcttggctaactagtgttatc-tctggttgttgtagtctttaaactcttgtaacttttagtggtt 6004498  T
Q  107 tcctaggcacaccttgtgcttggatattgctgtttgatgtgttatataatttcattttgatttc 170  Q
    ||||||||||||||||||||||   | | ||||||| |||||||||||||| ||||||||||||    
T  6004497 tcctaggcacaccttgtgcttgagaactactgtttggtgtgttatataattccattttgatttc 6004434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 10 - 170
Target Start/End: Complemental strand, 6008126 - 6007964
Alignment:
Q  10 gcagagatggtgttccgacccttttgcttgtttggggttgactacctagtgtaaacctctgtttgttgt--tacttaaactcttgtat-ttttagtggta 106  Q
    |||||||||||| || ||||||||||||||||| || ||| ||| ||||||| | | |||| |||||||  |  |||||||||||||  ||||||||||     
T  6008126 gcagagatggtggtcagacccttttgcttgtttaggcttggctaactagtgttatc-tctggttgttgtagtctttaaactcttgtaacttttagtggtt 6008028  T
Q  107 tcctaggcacaccttgtgcttggatattgctgtttgatgtgttatataatttcattttgatttc 170  Q
    ||||||||||||||||||||||   | |  |||||| |||||||||||||| ||||||||||||    
T  6008027 tcctaggcacaccttgtgcttgagaactaatgtttggtgtgttatataattccattttgatttc 6007964  T

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Target: chr6; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 82 - 170
Target Start/End: Complemental strand, 21548403 - 21548314
Alignment:
Q  82 ttaaactcttgtat-ttttagtggtatcctaggcacaccttgtgcttggatattgctgtttgatgtgttatataatttcattttgatttc 170  Q
    |||||||||||||  |||||||||| ||||| |||||||||||||||||  | ||||||||| |||||||| ||||||||||||||||||    
T  21548403 ttaaactcttgtaacttttagtggtttcctaagcacaccttgtgcttggggactgctgtttggtgtgttatttaatttcattttgatttc 21548314  T

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Target: chr6; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 10 - 170
Target Start/End: Complemental strand, 26010500 - 26010338
Alignment:
Q  10 gcagagatggtgttccgacccttttgcttgtttggggttgactacctagtgtaaacctctgtttgttgt--tacttaaactcttgtat-ttttagtggta 106  Q
    |||||||||||| || ||||||||||||||||| || ||| ||| ||||||| | | |||| ||| |||  || ||||| |||||||  ||||||||||     
T  26010500 gcagagatggtggtcagacccttttgcttgtttaggcttggctagctagtgttatc-tctggttggtgtattatttaaattcttgtaacttttagtggtt 26010402  T
Q  107 tcctaggcacaccttgtgcttggatattgctgtttgatgtgttatataatttcattttgatttc 170  Q
    |||||||||||||||||||||||  | |||| |||  |||||||| ||||| ||||||||||||    
T  26010401 tcctaggcacaccttgtgcttggggactgctatttagtgtgttatttaattccattttgatttc 26010338  T

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Target: chr6; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 10 - 170
Target Start/End: Complemental strand, 24378405 - 24378243
Alignment:
Q  10 gcagagatggtgttccgacccttttgcttgtttggggttgactacctagtgtaaacctctgtttgttgt--tacttaaactcttgtat-ttttagtggta 106  Q
    |||||||||||| || |||| |||||||||||| || ||| ||| ||||||| |   |||| |||||||  |  |||||||||||||  ||||||||||     
T  24378405 gcagagatggtggtcagaccattttgcttgtttaggcttggctaactagtgttatt-tctggttgttgtattttttaaactcttgtaacttttagtggtt 24378307  T
Q  107 tcctaggcacaccttgtgcttggatattgctgtttgatgtgttatataatttcattttgatttc 170  Q
    || |||||||||||| |||||||  | ||||||||| |||||||| ||||| ||||||||||||    
T  24378306 tcttaggcacaccttatgcttggggactgctgtttggtgtgttatttaattccattttgatttc 24378243  T

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Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 96 - 170
Target Start/End: Complemental strand, 9564907 - 9564836
Alignment:
Q  96 ttttagtggtatcctaggcacaccttgtgcttggatattgctgtttgatgtgttatataatttcattttgatttc 170  Q
    |||||||| ||||||||||||||||| |||||| | |   ||| ||| |||| ||||||||||||||||||||||    
T  9564907 ttttagtgatatcctaggcacaccttatgcttgaaaa---ctgcttggtgtgatatataatttcattttgatttc 9564836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 95 - 170
Target Start/End: Original strand, 23066650 - 23066726
Alignment:
Q  95 tttttagtggtatcctaggcacaccttgtgcttggatattgctgtttgatgt-gttatataatttcattttgatttc 170  Q
    ||||||| ||| |||||| ||||||||||||||||  | ||||| ||| ||| || |||||||||||||||||||||    
T  23066650 tttttagcggtctcctagtcacaccttgtgcttgggaactgctgattgttgtggtaatataatttcattttgatttc 23066726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 95 - 170
Target Start/End: Original strand, 31297749 - 31297825
Alignment:
Q  95 tttttagtggtatcctaggcacaccttgtgcttggatattgctgtttgatgt-gttatataatttcattttgatttc 170  Q
    ||||||| ||| |||| ||||||| ||||||||||  | ||||| ||| ||| ||||||||||||||||||||||||    
T  31297749 tttttagcggtctcctgggcacacattgtgcttgggaactgctgattgttgtagttatataatttcattttgatttc 31297825  T

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Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 170
Target Start/End: Complemental strand, 11454628 - 11454552
Alignment:
Q  95 tttttagtggtatcctaggcacaccttgtgcttggatattgctgtttgatg-tgttatataatttcattttgatttc 170  Q
    ||||||||| | ||||||||||||||||| |||||| |  |||| ||| ||  ||||||||||||||||| ||||||    
T  11454628 tttttagtgatctcctaggcacaccttgtacttggaaaccgctgattgttgcggttatataatttcatttggatttc 11454552  T

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Target: chr4 (Bit Score: 76; Significance: 3e-35; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 14 - 170
Target Start/End: Original strand, 46639506 - 46639664
Alignment:
Q  14 agatggtgttccgacccttttgcttgtttggggttgactacctagtgtaaacctctgttt-gttgt-tacttaaactcttgtat-ttttagtggtatcct 110  Q
    |||||||| || || ||||||||||||||||| ||||||| ||||||||| | ||||||| ||||| | ||| ||||||||||  |||||||||||| ||    
T  46639506 agatggtggtcagatccttttgcttgtttgggtttgactatctagtgtaatc-tctgttttgttgtgttctttaactcttgtaacttttagtggtattct 46639604  T
Q  111 aggcacaccttgtgcttggatattgctgtttgatgtgttatataatttcattttgatttc 170  Q
    ||||| ||||||||||||||||||||||| || |||||||||||||||||||||||||||    
T  46639605 aggcataccttgtgcttggatattgctgtgtggtgtgttatataatttcattttgatttc 46639664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 10 - 170
Target Start/End: Complemental strand, 55223279 - 55223117
Alignment:
Q  10 gcagagatggtgttccgacccttttgcttgtttggggtt-gactacctagtgtaaacctctgtttgttgt-tacttaaactcttgtat-ttttagtggta 106  Q
    |||||| ||||| || |||||||| ||||||||||| || | ||| ||||||||| |||||||||||||| | ||| ||||||||||  ||||||| |||    
T  55223279 gcagagttggtggtcagaccctttagcttgtttgggctttggctaactagtgtaa-cctctgtttgttgtattctttaactcttgtaacttttagttgta 55223181  T
Q  107 tcctaggcacaccttgtgcttggatattgctgtttgatgtgttatataatttcattttgatttc 170  Q
    |||||||||||||||||||||||  |  |||| ||| |||||||||||||||||||||||||||    
T  55223180 tcctaggcacaccttgtgcttgggaaccgctgcttggtgtgttatataatttcattttgatttc 55223117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 10 - 170
Target Start/End: Complemental strand, 26693555 - 26693394
Alignment:
Q  10 gcagagatggtgttccgacccttttgcttgtttggggttgactacctagtgtaaacctctgtttgttgt--tacttaaactcttgtat-ttttagtggta 106  Q
    |||||||||||| || ||||||||||||||||| || ||| ||| ||||||| | | |||| |||||||  |  |||||||||||||  ||||||||||     
T  26693555 gcagagatggtggtcagacccttttgcttgtttaggtttggctagctagtgttatc-tctggttgttgtattttttaaactcttgtaacttttagtggtt 26693457  T
Q  107 tcctaggcacaccttgtgcttggatattgctgtttgatgtgttatataatttcattttgatttc 170  Q
    |||||||||||||||||||||||  | ||||| ||| |||||| | ||||| ||||||||||||    
T  26693456 tcctaggcacaccttgtgcttgggaactgctggttggtgtgtt-tttaattccattttgatttc 26693394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 96 - 170
Target Start/End: Complemental strand, 50451620 - 50451546
Alignment:
Q  96 ttttagtggtatcctaggcacaccttgtgcttggatattgctgtttgatgtgttatataatttcattttgatttc 170  Q
    ||||||||||||| |||||| ||||||||| |||    | ||| ||| |||| ||||||||||||||||||||||    
T  50451620 ttttagtggtatcttaggcataccttgtgcctgggagctactgcttggtgtgatatataatttcattttgatttc 50451546  T

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Target: chr1 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 14 - 170
Target Start/End: Original strand, 43510306 - 43510464
Alignment:
Q  14 agatggtgttccgacccttttgcttgtttgggg-ttgactacctagtgtaaacctctgtttgttgtta-cttaaactcttgtat-ttttagtggtatcct 110  Q
    |||||||| ||  ||||||| | |||||||||  ||||||| ||||||||| | |||||||||||| | | | ||||||||||  |||||||||||| ||    
T  43510306 agatggtggtcaaaccctttagtttgtttgggcattgactagctagtgtaatc-tctgtttgttgtgatcattaactcttgtaacttttagtggtattct 43510404  T
Q  111 aggcacaccttgtgcttggatattgctgtttgatgtgttatataatttcattttgatttc 170  Q
    ||| |||||||||||||||  | ||||| ||| |||||||||||||||||||||||||||    
T  43510405 aggtacaccttgtgcttgggaactgctgcttggtgtgttatataatttcattttgatttc 43510464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 95 - 170
Target Start/End: Original strand, 34854239 - 34854314
Alignment:
Q  95 tttttagtggtatcctaggcacaccttgtgcttggatattgctgtttgatgtgttatataatttcattttgatttc 170  Q
    ||||||||||| ||||||||||||||| |||||||  | |||| |||| |||||||||||||||||||||||||||    
T  34854239 tttttagtggtctcctaggcacaccttctgcttgggaactgctctttggtgtgttatataatttcattttgatttc 34854314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 170
Target Start/End: Original strand, 72215 - 72377
Alignment:
Q  10 gcagagatggtgttccgacccttttgcttgtttgggg-ttgactacctagtgtaaacctctgtttgttgttactta-aactcttgtat-ttttagtggta 106  Q
    |||||| ||||| ||  ||||||| |||||||||||  ||| ||| ||| ||||| |||||||||||||||  ||  ||||||||||  ||||| | |||    
T  72215 gcagagttggtggtcaaaccctttagcttgtttgggcattggctaactaatgtaa-cctctgtttgttgttttttttaactcttgtaacttttaatagta 72313  T
Q  107 tcctaggcacaccttgtgcttggatattgctgtttgatgtgttatataatttcattttgatttc 170  Q
    ||||||  | ||||| ||||||   | ||||||||| |||||||||||||||||||||||||||    
T  72314 tcctagatataccttatgcttgagaactgctgtttggtgtgttatataatttcattttgatttc 72377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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