View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10319_high_3 (Length: 572)
Name: NF10319_high_3
Description: NF10319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10319_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 12 - 552
Target Start/End: Original strand, 33281337 - 33281874
Alignment:
| Q |
12 |
agagatggtggtattcatttaggtgaaagttgagtcttctcatgcaacaagcgtgtagccatagttaaaagatttgtctctaaatgagtgtttgttaatg |
111 |
Q |
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| T |
33281337 |
agagatggtagtattcatttaggtgaaagttgagtcttctcatgcaataagcgtgtagccatagtcaaaaaattcatctctaaatgagtgtttgttaatg |
33281436 |
T |
|
| Q |
112 |
aattatttaaggggaaatgtatatttgaaattacaatatttcttaaaaagtaatattgtttaagaatttgtttatgttttcctnnnnnnnnnnnttgttt |
211 |
Q |
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| T |
33281437 |
aattatttaaggggaaatgtatatttgaaattacaatatttcttaaaaagtaatcttgtttaagaatttgtttctgttttcctaaaaaaaaa--ttgttt |
33281534 |
T |
|
| Q |
212 |
tcatatgttttcctaaaaacaaaaaattgttcatgttacaacacttaacnnnnnnnnnntctaaatactct---taaattgttcgtacatttgaaggatc |
308 |
Q |
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| T |
33281535 |
gcttatgttttcctataaacaaaaaattgttcatgttacaacacttaagaaaataaaaatctaaatactctgcttaaattgttcgtacatttgaaggatc |
33281634 |
T |
|
| Q |
309 |
tcaaacacatcctataatctttagagtatgcaagatcagcttcgttgcactttagttgatcttagcaaaactaatatgtactttggagcattatgataat |
408 |
Q |
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| T |
33281635 |
tcaaacacatcctataatctttagagtatgcaagatcagcttcgttgcactttagttgattttagcaaaactgatatgtactttggagcattatgataat |
33281734 |
T |
|
| Q |
409 |
ctctgcacttcacatgactattaattaatagcacaatctccatatctacagtcaaacaccttgggaacatcaaaccctccatatacaaggttgttgttaa |
508 |
Q |
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| T |
33281735 |
ctctgcacttcacatggct----attgatagcacaatctccatatcttctgtctaacaccttgggcacatcaaaccctccatatacaaggttgtcattaa |
33281830 |
T |
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| Q |
509 |
tgacaagtacattatgtaagatcaatgtaacatttttggcacat |
552 |
Q |
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| T |
33281831 |
tgacaggtacattatgtaagatcaatgtaacatttttggcacat |
33281874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 125; Significance: 4e-64; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 310 - 523
Target Start/End: Original strand, 19218577 - 19218786
Alignment:
| Q |
310 |
caaacacatcctataatctttagagtatgcaagatcagcttcgttgcactttagttgatcttagcaaaactaatatgtactttggagcattatgataatc |
409 |
Q |
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| T |
19218577 |
caaacacatcctataatctttagagtatgtaagatcagcttcgttgcactttagttgatcttagcaaaactgatatgtactttggagcattatgataatc |
19218676 |
T |
|
| Q |
410 |
tctgcacttcacatgactattaattaatagcacaatctccatatctacagtcaaacaccttgggaacatcaaaccctccatatacaaggttgttgttaat |
509 |
Q |
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| T |
19218677 |
tctgcactttacatgactattact----agcacgattttcatatcttctggcaagcaccttgggcacatcaaaccttccagatacaaggttgacattaac |
19218772 |
T |
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| Q |
510 |
gacaagtacattat |
523 |
Q |
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| T |
19218773 |
gacaagtacattat |
19218786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 70 - 194
Target Start/End: Original strand, 19217642 - 19217767
Alignment:
| Q |
70 |
ccatagttaaaagatttgtctctaaatgagtgtttgttaatgaattatttaag-gggaaatgtatatttgaaattacaatatttcttaaaaagtaatatt |
168 |
Q |
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||||||| |||||||| |||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| |||| || |
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| T |
19217642 |
ccatagtcaaaagattcgtctctaaatgagtgtttgttaatgaattatttaagcgggaaatgtctatttgaaattacaatatttcttaaaagttaatgtt |
19217741 |
T |
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| Q |
169 |
gtttaagaatttgtttatgttttcct |
194 |
Q |
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| T |
19217742 |
gtttaagaatttgtttatgttttcct |
19217767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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