View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10319_high_33 (Length: 240)

Name: NF10319_high_33
Description: NF10319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10319_high_33
NF10319_high_33
[»] chr5 (4 HSPs)
chr5 (18-240)||(13658121-13658349)
chr5 (23-240)||(13652659-13652885)
chr5 (141-240)||(13647722-13647821)
chr5 (20-93)||(13647592-13647665)


Alignment Details
Target: chr5 (Bit Score: 146; Significance: 5e-77; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 13658121 - 13658349
Alignment:
Q  18 atgaagacatggatcgcatcataagaaacgtgccaggcatggaaaacttgcttcgatgtagagatcttccaagtttctgcaaaatgaatgatgct----- 112  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |||||  |         
T  13658121 atgaggacatggatcgcatcataagaaacgtgccaggcatggaaaacttgcttcgatgtagagatcttccaagtttccgtaaaatggatgatagtgatac 13658220  T
Q  113 -attttagaccagtttgtacttctgacccaacaatcacttaaaggcaatgcattaatactcaacacgttagagaatctagaatccccagttctctcccaa 211  Q
     || |||||| ||  || |||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| |||||| |||    
T  13658221 catattagacaaggctgcacttctgacccaacaatcacttaaaggcaatgcactaatactcaacacgttcgagaatctagaatccccagctctctctcaa 13658320  T
Q  212 attcgtcttcatgcccctaaactctacac 240  Q
    |||||||||||||||||||||||||||||    
T  13658321 attcgtcttcatgcccctaaactctacac 13658349  T

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Target: chr5; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 23 - 240
Target Start/End: Original strand, 13652659 - 13652885
Alignment:
Q  23 gacatggatcgcatcataagaaacgtgccaggcatggaaaacttgcttcgatgtagagatcttccaagtttctg---------caaaatgaatgatgcta 113  Q
    |||||||||||||||||||||||||||||||||||||| ||| |  |||||||||||||||||||| ||||| |         ||||||| |  ||   |    
T  13652659 gacatggatcgcatcataagaaacgtgccaggcatggagaacataattcgatgtagagatcttccacgtttcggtacatcaaacaaaatggaccatatca 13652758  T
Q  114 ttttagaccagtttgtacttctgacccaacaatcacttaaaggcaatgcattaatactcaacacgttagagaatctagaatccccagttctctcccaaat 213  Q
    |||||||| |  || |||  || ||||||  ||||||||||||||||||| ||||||||||||| || ||  || |||| |||||| |||||||||||||    
T  13652759 ttttagacaaagttttacaactaacccaagcatcacttaaaggcaatgcagtaatactcaacacatttgaagatttagagtccccaattctctcccaaat 13652858  T
Q  214 tcgtcttcatgcccctaaactctacac 240  Q
    |||||| ||   ||| |||||||||||    
T  13652859 tcgtctccacttccccaaactctacac 13652885  T

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Target: chr5; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 141 - 240
Target Start/End: Original strand, 13647722 - 13647821
Alignment:
Q  141 aacaatcacttaaaggcaatgcattaatactcaacacgttagagaatctagaatccccagttctctcccaaattcgtcttcatgcccctaaactctacac 240  Q
    |||||||||||||||  |||||||| ||||||||||| || ||| |||||||| || |||| ||||||||||||||| ||||   |||||||||||||||    
T  13647722 aacaatcacttaaagcaaatgcattcatactcaacacatttgaggatctagaagcctcagtcctctcccaaattcgtattcacttccctaaactctacac 13647821  T

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Target: chr5; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 20 - 93
Target Start/End: Original strand, 13647592 - 13647665
Alignment:
Q  20 gaagacatggatcgcatcataagaaacgtgccaggcatggaaaacttgcttcgatgtagagatcttccaagttt 93  Q
    |||||||||||||| ||||||| |||| | ||||||||||||||| | ||||| ||||||||||||||||||||    
T  13647592 gaagacatggatcgaatcataacaaacattccaggcatggaaaacatacttcgctgtagagatcttccaagttt 13647665  T

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