View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10319_high_34 (Length: 238)
Name: NF10319_high_34
Description: NF10319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10319_high_34 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 8028934 - 8029171
Alignment:
| Q |
1 |
agaacctctactgcaaaacgttcccaaaaaggctaggtattgcagatttgggttgttcttctgggccaaacactttgtttgtgatatctgaagttatcaa |
100 |
Q |
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| T |
8028934 |
agaacctctactgcaaaacgttcccaaaaaggctaggtattgcagatttgggttgttcttctgggccaaacactttgttggtgatatctgaagttatcaa |
8029033 |
T |
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| Q |
101 |
attagtaaagaaactttgccaagaacataatcacgagtctccagaataccaagtcttcatgaatgatcttcaagggaatgatttcaacaatatttttagg |
200 |
Q |
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| T |
8029034 |
attagttgataaactttgccaagaacataatcacgagtctccagaataccaagtcttcatgaatgatcttcaagggaatgatttcaacaacatttttagg |
8029133 |
T |
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| Q |
201 |
ttacttgataggttcacagagaaactaaatgatgaagt |
238 |
Q |
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| T |
8029134 |
ttacttgataggttcacagagaaactaaatgatgaagt |
8029171 |
T |
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Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 39 - 88
Target Start/End: Complemental strand, 7298171 - 7298122
Alignment:
| Q |
39 |
attgcagatttgggttgttcttctgggccaaacactttgtttgtgatatc |
88 |
Q |
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| T |
7298171 |
attgcagatttaggttgttcttctggaccaaacactttgtttgtggtatc |
7298122 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 39 - 100
Target Start/End: Complemental strand, 32709950 - 32709889
Alignment:
| Q |
39 |
attgcagatttgggttgttcttctgggccaaacactttgtttgtgatatctgaagttatcaa |
100 |
Q |
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| T |
32709950 |
attgcagacttgggttgctcttctgggccaaacactttgttggtggtatcagaatttatcaa |
32709889 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 79
Target Start/End: Complemental strand, 32704240 - 32704200
Alignment:
| Q |
39 |
attgcagatttgggttgttcttctgggccaaacactttgtt |
79 |
Q |
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| T |
32704240 |
attgcagatttgggttgctcttatggaccaaacactttgtt |
32704200 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 39 - 101
Target Start/End: Complemental strand, 27736976 - 27736914
Alignment:
| Q |
39 |
attgcagatttgggttgttcttctgggccaaacactttgtttgtgatatctgaagttatcaaa |
101 |
Q |
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|||||||| |||||||| |||| ||||||||||||| |||| |||||||| ||| |||||||| |
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| T |
27736976 |
attgcagacttgggttgctcttttgggccaaacactatgttggtgatatcagaaattatcaaa |
27736914 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 39 - 100
Target Start/End: Complemental strand, 5811657 - 5811596
Alignment:
| Q |
39 |
attgcagatttgggttgttcttctgggccaaacactttgtttgtgatatctgaagttatcaa |
100 |
Q |
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|||||||| |||||||| |||| ||| ||||||||||| || ||||| |||||| ||||||| |
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| T |
5811657 |
attgcagacttgggttgctcttttggaccaaacactttcttggtgatctctgaaattatcaa |
5811596 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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