View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10319_high_35 (Length: 238)
Name: NF10319_high_35
Description: NF10319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10319_high_35 |
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Alignment Details
Target: chr7 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 27093042 - 27092810
Alignment:
| Q |
1 |
caacttcatcactgaattgttcacctcaggcacccttagagagtaatcaattaatcaaccactccttatgtatcaaacgttctactaatttattggcaat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
27093042 |
caacttcatcactgaattgttcacctcaggcacccttagagagtaatcaattaatcaaccactccttatgtatcaaacgttctactaattaattggcaat |
27092943 |
T |
|
| Q |
101 |
ccatattttgtgataatatttatgcatgtataggtataggcagaagtataagaaagtggataaccaagcactaaagaattgggcacgccagattctaagt |
200 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27092942 |
ccatattttgtgataacatttatgcatgtataggtataggcagaagtataagaaagtggataaccaagcactaaagaattgggcacgccagattctaagt |
27092843 |
T |
|
| Q |
201 |
ggtttggaatatttacacaaccataatcctcct |
233 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
27092842 |
ggtttggaatatttacacaaccataatcctcct |
27092810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 27185259 - 27185491
Alignment:
| Q |
1 |
caacttcatcactgaattgttcacctcaggcacccttagagagtaatcaattaatcaaccactccttatgtatcaaacgttctactaatttattggcaat |
100 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
27185259 |
caacttcatcactgaattgttcacctcaggcacccttagagagtaatcaattaatcaaccactccttatgtatcaaacgttctactaattaattggcaat |
27185358 |
T |
|
| Q |
101 |
ccatattttgtgataatatttatgcatgtataggtataggcagaagtataagaaagtggataaccaagcactaaagaattgggcacgccagattctaagt |
200 |
Q |
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| T |
27185359 |
ccatattttgtgataacatttatgcatgtataggtataggcagaagtataagaaagtggataaccaagcactaaagaattgggcacgccagattctaagt |
27185458 |
T |
|
| Q |
201 |
ggtttggaatatttacacaaccataatcctcct |
233 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
27185459 |
ggtttggaatatttacacaaccataatcctcct |
27185491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 167 - 233
Target Start/End: Original strand, 9907810 - 9907876
Alignment:
| Q |
167 |
agcactaaagaattgggcacgccagattctaagtggtttggaatatttacacaaccataatcctcct |
233 |
Q |
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|||| ||||||||||||| ||||||||||||||||||||||| ||||| || | |||| |||||||| |
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| T |
9907810 |
agcaataaagaattgggctcgccagattctaagtggtttggagtatttgcatagccatgatcctcct |
9907876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 9907143 - 9907189
Alignment:
| Q |
1 |
caacttcatcactgaattgttcacctcaggcacccttagagagtaat |
47 |
Q |
| |
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||||||||||||||||||||||||||| ||||| || |||||||||| |
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| T |
9907143 |
caacttcatcactgaattgttcacctccggcactctaagagagtaat |
9907189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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