View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10319_high_5 (Length: 555)

Name: NF10319_high_5
Description: NF10319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10319_high_5
NF10319_high_5
[»] chr7 (9 HSPs)
chr7 (18-336)||(7306216-7306534)
chr7 (18-289)||(7310815-7311086)
chr7 (21-287)||(7328375-7328636)
chr7 (356-541)||(7328963-7329143)
chr7 (21-115)||(35205680-35205774)
chr7 (181-233)||(21218375-21218427)
chr7 (30-131)||(21218474-21218575)
chr7 (297-334)||(7328813-7328850)
chr7 (21-101)||(21210259-21210339)
[»] chr1 (1 HSPs)
chr1 (29-131)||(31442755-31442857)
[»] chr5 (1 HSPs)
chr5 (21-131)||(42298305-42298415)
[»] scaffold0064 (1 HSPs)
scaffold0064 (35-131)||(24389-24485)
[»] scaffold0128 (1 HSPs)
scaffold0128 (60-131)||(4370-4441)


Alignment Details
Target: chr7 (Bit Score: 251; Significance: 1e-139; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 18 - 336
Target Start/End: Complemental strand, 7306534 - 7306216
Alignment:
Q  18 ctgtataacttgagaactaatagagtactgaaatctagagttaacaaaaagatatgttggtactctatcaaggattatgtcgaaagcctggtctcaacct 117  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||    
T  7306534 ctgtataacttgagaactaatagagtactgaaatctagagtcaacaaaaagatatgttggttctctatcaaggattatgtcgaaagtctggtctcaacct 7306435  T
Q  118 attgaaagtaagttttgctgcaacataatatttatttcaaattatgtacttgaggttttgacttggtttcaattgtgtgattatttcctttactttaaaa 217  Q
    |||||| ||| ||||| || |||||||||||||||||||| ||||||||||  |||||| ||||||||||||||||| ||||||||||||||||||||||    
T  7306434 attgaacgtaggtttttctccaacataatatttatttcaatttatgtactt--ggtttttacttggtttcaattgtgcgattatttcctttactttaaaa 7306337  T
Q  218 ctttgccatagatatggcgaatcaatcaacggatccgaatacctttttagaactccgttatc--tatatatataattttagccatataatgattttgcaa 315  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||    
T  7306336 ctttgccatagatatggtgaatcaatcaacggatccgaatacctttttagaactccgttatctatatatatataattttagccatataatgattttgcaa 7306237  T
Q  316 ttcaatagatagtgaatattc 336  Q
    ||||||||||| |||||||||    
T  7306236 ttcaatagataatgaatattc 7306216  T

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Target: chr7; HSP #2
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 18 - 289
Target Start/End: Complemental strand, 7311086 - 7310815
Alignment:
Q  18 ctgtataacttgagaactaatagagtactgaaatctagagttaacaaaaagatatgttggtactctatcaaggattatgtcgaaagcctggtctcaacct 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| |||||||    
T  7311086 ctgtataacttgagaactaatagagtactgaaatctagagttaacaaaaagatatgttggttctctatcaaggattatgtcgaaagtctggtttcaacct 7310987  T
Q  118 attgaaagtaagttttgctgcaacataatatttatttcaaattatgtacttg-aggttttgacttggtttcaattgtgtgattatttcctttactttaaa 216  Q
    ||||||||||||||||  |  ||||||||||||||||||  |||||||||||    |||| ||| |||||| ||||| ||||||||||||||||||||||    
T  7310986 attgaaagtaagtttttttctaacataatatttatttcagtttatgtacttgtttttttttactaggtttcgattgtatgattatttcctttactttaaa 7310887  T
Q  217 actttgccatagatatggcgaatcaatcaacggatccgaatacctttttagaactccgttatctatatatata 289  Q
    |||||| | ||| ||||| ||||||| | | |||||||||||||| |||||||||| ||||| ||||||||||    
T  7310886 actttgtcgtag-tatggtgaatcaaccgaaggatccgaatacctgtttagaactcagttatatatatatata 7310815  T

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Target: chr7; HSP #3
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 21 - 287
Target Start/End: Original strand, 7328375 - 7328636
Alignment:
Q  21 tataacttgagaactaatagagtactgaaatctagagttaacaaaaagatatgttggtactctatcaaggattatgtcgaaagcctggtctcaacctatt 120  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||  |    
T  7328375 tataacttgagaactaatagagtactggaatctagagttaacaaaaagatatgttggtactctatcaaggattatgtcgaaagtctggtttcaacctgct 7328474  T
Q  121 gaaagtaagttttgctgcaacataatatttatttcaaattatgtacttgaggttttgacttggtttcaattgtgtgattatttcctttactttaaaactt 220  Q
    ||||||||||||| || |||||||||||||||||||| ||||||||||   |||||| ||| ||||    ||||||| ||||| |||||||||| |||||    
T  7328475 gaaagtaagtttttctccaacataatatttatttcaatttatgtactt--agttttgccttcgttt---atgtgtgagtatttgctttactttagaactt 7328569  T
Q  221 tgccatagatatggcgaatcaatcaacggatccgaatacctttttagaactccgttatctatatata 287  Q
    || ||||||||||| ||||||| | || ||||||||||| | || ||||||| ||| ||||||||||    
T  7328570 tgtcatagatatggtgaatcaaccgactgatccgaatacgtgttcagaactcagttctctatatata 7328636  T

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Target: chr7; HSP #4
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 356 - 541
Target Start/End: Original strand, 7328963 - 7329143
Alignment:
Q  356 ttcactcttgagaggttgag-taagattgtgtgagaatgtgtagattttctcacttttatctcgaacaagttgggactatcaattatttctgacggtatt 454  Q
    |||||||||||||||||| | || ||||||||  |||||||||||| ||| || |||  |||| ||||| ||||||| ||||| ||| ||| || |||||    
T  7328963 ttcactcttgagaggttgggctatgattgtgttggaatgtgtagatgttc-cattttcgtctctaacaaattgggaccatcaaatatatctaactgtatt 7329061  T
Q  455 atttttgggttctaccggtgacggacctaattgaaccctcacctcaccctagaagccaccttgcaacttgtttccaaatgttttctg 541  Q
    |||||||||||| ||| |||| |||| |||||||||     |||||||||||||| |||||| ||||||||||| ||||||||||||    
T  7329062 atttttgggttccaccagtgagggacttaattgaac-----cctcaccctagaagtcaccttacaacttgtttctaaatgttttctg 7329143  T

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Target: chr7; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 21 - 115
Target Start/End: Complemental strand, 35205774 - 35205680
Alignment:
Q  21 tataacttgagaactaatagagtactgaaatctagagttaacaaaaagatatgttggtactctatcaaggattatgtcgaaagcctggtctcaac 115  Q
    ||||||| |||||| ||||||||||||||||||  | ||||||| ||||||||||||| | |||||||||||||||||||||||||||| |||||    
T  35205774 tataactggagaaccaatagagtactgaaatcttcaattaacaataagatatgttggttcactatcaaggattatgtcgaaagcctggtttcaac 35205680  T

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Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 181 - 233
Target Start/End: Complemental strand, 21218427 - 21218375
Alignment:
Q  181 tggtttcaattgtgtgattatttcctttactttaaaactttgccatagatatg 233  Q
    |||||||||||||||||||||||||||| ||| ||||||||| ||||||||||    
T  21218427 tggtttcaattgtgtgattatttcctttgcttcaaaactttgtcatagatatg 21218375  T

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Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 30 - 131
Target Start/End: Complemental strand, 21218575 - 21218474
Alignment:
Q  30 agaactaatagagtactgaaatctagagttaacaaaaagatatgttggtactctatcaaggattatgtcgaaagcctggtctcaacctattgaaagtaag 129  Q
    |||||||| | ||||  |||| ||||| |||||||||||||| |||||| |||  || | ||||||||||||||| |||| ||||| | |||||||||||    
T  21218575 agaactaacaaagtaaagaaagctagaattaacaaaaagataagttggtcctcagtctatgattatgtcgaaagcttggtttcaacttcttgaaagtaag 21218476  T
Q  130 tt 131  Q
    ||    
T  21218475 tt 21218474  T

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Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 297 - 334
Target Start/End: Original strand, 7328813 - 7328850
Alignment:
Q  297 ccatataatgattttgcaattcaatagatagtgaatat 334  Q
    |||||||||||||||||||||||| |||||||||||||    
T  7328813 ccatataatgattttgcaattcaacagatagtgaatat 7328850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 21 - 101
Target Start/End: Complemental strand, 21210339 - 21210259
Alignment:
Q  21 tataacttgagaactaatagagtactgaaatctagagttaacaaaaagatatgttggtactctatcaaggattatgtcgaa 101  Q
    |||||||| |||| ||||| |||||||||||| | | ||||| | |||||| |||||| || || | ||||||||||||||    
T  21210339 tataacttcagaaataatacagtactgaaatccaaaattaaccataagatacgttggttctgtaccgaggattatgtcgaa 21210259  T

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Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 29 - 131
Target Start/End: Complemental strand, 31442857 - 31442755
Alignment:
Q  29 gagaactaatagagtactgaaatctagagttaacaaaaagatatgttggtactctatcaaggattatgtcgaaagcctggtctcaacctattgaaagtaa 128  Q
    ||||| |||||||||| ||||| ||||||||||||||||||||||||||| |||||| ||  |||||||||||||| |||| |||||   ||||||||||    
T  31442857 gagaaataatagagtagtgaaaactagagttaacaaaaagatatgttggttctctataaaccattatgtcgaaagcttggtttcaacaagttgaaagtaa 31442758  T
Q  129 gtt 131  Q
    |||    
T  31442757 gtt 31442755  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 21 - 131
Target Start/End: Original strand, 42298305 - 42298415
Alignment:
Q  21 tataacttgagaactaatagagtactgaaatctagagttaacaaaaagatatgttggtactctatcaaggattatgtcgaaagcctggtctcaacctatt 120  Q
    |||||| ||||||| || |||| |  |||| ||||  |||||| |||||||||||||| ||| || || ||||||||||||||| |||| ||||| | ||    
T  42298305 tataacctgagaacaaacagagcaaagaaaactaggattaacagaaagatatgttggtcctcaatgaaagattatgtcgaaagcttggtttcaacttctt 42298404  T
Q  121 gaaagtaagtt 131  Q
    |||||||||||    
T  42298405 gaaagtaagtt 42298415  T

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Target: scaffold0064 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0064
Description:

Target: scaffold0064; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 35 - 131
Target Start/End: Original strand, 24389 - 24485
Alignment:
Q  35 taatagagtactgaaatctagagttaacaaaaagatatgttggtactctatcaaggattatgtcgaaagcctggtctcaacctattgaaagtaagtt 131  Q
    |||||||||| ||||| |||| ||||||||||||||||||||||  ||||| ||  ||||||| |||||| ||||  |||| | |||| ||||||||    
T  24389 taatagagtagtgaaaactagggttaacaaaaagatatgttggtgatctataaacaattatgttgaaagcatggttccaacttgttgagagtaagtt 24485  T

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Target: scaffold0128 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0128
Description:

Target: scaffold0128; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 60 - 131
Target Start/End: Original strand, 4370 - 4441
Alignment:
Q  60 aacaaaaagatatgttggtactctatcaaggattatgtcgaaagcctggtctcaacctattgaaagtaagtt 131  Q
    |||||||||||| |||||| | | || || ||||||||||||||| |||| ||||| | |||||||||||||    
T  4370 aacaaaaagatacgttggttcccaatgaaagattatgtcgaaagcttggtttcaacttcttgaaagtaagtt 4441  T

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