View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10319_low_10 (Length: 530)
Name: NF10319_low_10
Description: NF10319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10319_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 237; Significance: 1e-131; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 208 - 514
Target Start/End: Complemental strand, 33227271 - 33226964
Alignment:
| Q |
208 |
aagagttcagtgacgaaactcacacataagaagtgtagagaagttagaaattgtgagttcgactctgagttccaactatatcaaacgtctctgcaacatt |
307 |
Q |
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| T |
33227271 |
aagagttcagtgacgaaactcacacacaagaagtgtagagaagttagaaattgcgagttcgaccctgagtcccaactatatcaaacgtctctgcaacatt |
33227172 |
T |
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| Q |
308 |
ttaatgtttgatcacnnnnnnnnn-gagcaaaatgtttgatcacttatacttacaaattaaattaaatttatatacacttgttatataaaattctacaca |
406 |
Q |
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| T |
33227171 |
ttaatgtttgatcacttttttttttgagcaaaatgtttgatcacttatacttacaaattaaattaaatttatatacacttgttatataaaattctacaca |
33227072 |
T |
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| Q |
407 |
tatatttaataagatcttataaccgtttagatttttaatgtgtatatcttagtccctgtttggttttccggtgaactgcccgaaacgcacgtttcgcctt |
506 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |||||||||| ||| |
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| T |
33227071 |
tatatttaataagatcctataaccgtttagatttttaatgtgtatatcctagtccctgtttggtttcccggtgaactgcccgaaatgcacgtttcgtctt |
33226972 |
T |
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| Q |
507 |
atatgccg |
514 |
Q |
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|||||||| |
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| T |
33226971 |
atatgccg |
33226964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 19 - 73
Target Start/End: Complemental strand, 33227465 - 33227411
Alignment:
| Q |
19 |
gcttgtgctagacataatgcttttttcatagtaatatattccagtttatcttgtt |
73 |
Q |
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| T |
33227465 |
gcttgtgctagacataatgcttttttcatagtaatatattccagtttatcttgtt |
33227411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 405 - 454
Target Start/End: Complemental strand, 33218309 - 33218261
Alignment:
| Q |
405 |
catatatttaataagatcttataaccgtttagatttttaatgtgtatatc |
454 |
Q |
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| T |
33218309 |
catatatttaataagatcttataactgtttagaatttt-atgtgtatatc |
33218261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 284 - 319
Target Start/End: Complemental strand, 33218689 - 33218654
Alignment:
| Q |
284 |
tatatcaaacgtctctgcaacattttaatgtttgat |
319 |
Q |
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| T |
33218689 |
tatatcaaacgtctctgcaacattttattgtttgat |
33218654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 459 - 514
Target Start/End: Complemental strand, 39001634 - 39001579
Alignment:
| Q |
459 |
tccctgtttggttttccggtgaactgcccgaaacgcacgtttcgccttatatgccg |
514 |
Q |
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| T |
39001634 |
tccctgtttggttttccggtgaactagccaaaacgcacgtttcaccatatatgccg |
39001579 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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