View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10319_low_11 (Length: 449)
Name: NF10319_low_11
Description: NF10319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10319_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 359; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 5 - 407
Target Start/End: Original strand, 38095360 - 38095767
Alignment:
| Q |
5 |
taagatggacattcgttcacatagaggtggtagagagacgagtccagaccgtgctaaaatatgtaggatgaagcaaaaggtgaaacccattagaaaagtt |
104 |
Q |
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| T |
38095360 |
taagatggacattcgttcacatagaggtggtagagagacgagtccagaccgtgctaaaatatgtaggatgaagcaaaaggtgaaacccattagaaaagtt |
38095459 |
T |
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| Q |
105 |
caggttgtttactatctctcaagaaatggcctattggagcatccacatttcatggaagttaccctttctcctaatcaacctctccgtttaaaaggtacta |
204 |
Q |
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| T |
38095460 |
caggttgtttactatctctcaagaaatggcctattggagcatccacatttcatggaagttaccctttctcctaatcaacctctccgtttaaaaggtacta |
38095559 |
T |
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| Q |
205 |
catttttcttcatatgtagctgctggtttgtgatattcataatgcattagtaaaattgatttttcttcnnnnnnngtttataatttgaatttggtaaaag |
304 |
Q |
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| T |
38095560 |
catttttcttcatatgtagctgctgttttgtgatattcataatgcattagtaaaattgatttttcttcgttttttgtttataatttgaatttggtaaaag |
38095659 |
T |
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| Q |
305 |
atgtatttgatcggctgatggcactaagaggaagtggcatgccttctcaatattcatggtctactaaaaggtaaac-----ttttatagtcttaatgtat |
399 |
Q |
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| T |
38095660 |
atgtatttgatcggctgatggcactaagaggaagtggcatgccttctcaatattcatggtctactaaaaggtaaacgtaacttgtatagtcttaatgtat |
38095759 |
T |
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| Q |
400 |
tcatggtc |
407 |
Q |
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| T |
38095760 |
tcatggtc |
38095767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 280 - 367
Target Start/End: Original strand, 38700290 - 38700368
Alignment:
| Q |
280 |
gtttataatttgaatttggtaaaagatgtatttgatcggctgatggcactaagaggaagtggcatgccttctcaatattcatggtcta |
367 |
Q |
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| T |
38700290 |
gtttgtaatttgaatttgataaaagatgtatttgatcggctg---------agaggaagtgacatgccttctcagtattcatggtcta |
38700368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 205 - 268
Target Start/End: Original strand, 38700172 - 38700238
Alignment:
| Q |
205 |
catttttcttcatatgtagctgctggtttgtgatattc---ataatgcattagtaaaattgattttt |
268 |
Q |
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| T |
38700172 |
catttttcttcctatgtagctgttggtttgtgatattcataataatgccttagtgaaattgattttt |
38700238 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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