View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10319_low_13 (Length: 446)
Name: NF10319_low_13
Description: NF10319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10319_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 14 - 439
Target Start/End: Complemental strand, 29728045 - 29727618
Alignment:
| Q |
14 |
agatggtttggtaagcattgattcttgtgattttatgtgtttttcatattgaaaacacaacttgtgtcatttggttttgtaaaattttccttttgcttta |
113 |
Q |
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| T |
29728045 |
agatggtttggtaagcattgattcttgtgattttatgtgtttttcatattgaaaacacaacttgtgtcatttggttttgtaaaattttccttttgcttca |
29727946 |
T |
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| Q |
114 |
attattcttatatcctataggactgaaaagtcaggagattgggttaatgtatcaaggttgatacatatgtgcatgtttatgcagatatatgttgttgata |
213 |
Q |
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| T |
29727945 |
attattcttatatcctataggactgaaaagtcaggagattgggttaatgtatcaaggttgatacatatgtgcatgtttatgcagatatatgttgttgata |
29727846 |
T |
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| Q |
214 |
gtctggaccgcgagagaattgggaaagcaaagcaagaatttcaggtgataagcccaaaaacttacaaatta--nnnnnnnnnnnnnnnnnacatgttatt |
311 |
Q |
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| T |
29727845 |
gtctggaccgcgagagaattgggaaagcaaagcaagaatttcaggtgataagcccaaaaacttacaaattaacacacacacacacacacaacatgttatt |
29727746 |
T |
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| Q |
312 |
ccaaacagactttgaattgatctatggattacttgcagacaatcataaacgacccgtttatgctcaacagtgtcatcttggtacttgccaacaaacaaga |
411 |
Q |
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| T |
29727745 |
ccaaacagactttgaattgatctatggattacttgcagacaatcataaacgacccgtttatgctcaacagtgtcatcttggtacttgccaacaaacaaga |
29727646 |
T |
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| Q |
412 |
cctggtatgtgtatcttgatctgtgctc |
439 |
Q |
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| T |
29727645 |
cctggtatgtgtatcttgatctgtgctc |
29727618 |
T |
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Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 338 - 418
Target Start/End: Original strand, 1541474 - 1541554
Alignment:
| Q |
338 |
gattacttgcagacaatcataaacgacccgtttatgctcaacagtgtcatcttggtacttgccaacaaacaagacctggta |
418 |
Q |
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| T |
1541474 |
gattacttgcaggcaatcataaatgacccatttatgcttaatagtgtcatattggtatttgcaaacaaacaggacctggta |
1541554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 189 - 260
Target Start/End: Original strand, 1541317 - 1541388
Alignment:
| Q |
189 |
tttatgcagatatatgttgttgatagtctggaccgcgagagaattgggaaagcaaagcaagaatttcaggtg |
260 |
Q |
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| T |
1541317 |
tttatgcagatttatgttgttgatagcctggatcgtgagaggataagccaagcaaagcaggaatttcaggtg |
1541388 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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