View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10319_low_14 (Length: 429)

Name: NF10319_low_14
Description: NF10319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10319_low_14
NF10319_low_14
[»] scaffold0312 (1 HSPs)
scaffold0312 (18-429)||(10967-11377)
[»] chr1 (14 HSPs)
chr1 (18-429)||(419194-419604)
chr1 (146-429)||(975557-975838)
chr1 (321-429)||(949663-949771)
chr1 (321-429)||(936754-936862)
chr1 (321-429)||(942674-942782)
chr1 (321-429)||(960635-960743)
chr1 (321-429)||(971944-972052)
chr1 (321-427)||(924533-924639)
chr1 (37-108)||(29833349-29833420)
chr1 (341-426)||(916483-916568)
chr1 (304-427)||(910000-910123)
chr1 (37-104)||(2404101-2404168)
chr1 (37-108)||(734852-734923)
chr1 (37-94)||(8933831-8933888)
[»] chr2 (6 HSPs)
chr2 (42-108)||(34576892-34576958)
chr2 (46-108)||(29801814-29801876)
chr2 (37-108)||(31489006-31489077)
chr2 (42-103)||(23859825-23859886)
chr2 (37-108)||(31486722-31486793)
chr2 (69-105)||(15729895-15729931)
[»] chr5 (8 HSPs)
chr5 (52-124)||(1779748-1779820)
chr5 (37-108)||(11852439-11852510)
chr5 (37-108)||(23164514-23164585)
chr5 (37-108)||(1779499-1779570)
chr5 (37-108)||(11850181-11850252)
chr5 (37-108)||(37207711-37207782)
chr5 (42-108)||(22600751-22600817)
chr5 (45-90)||(37207639-37207684)
[»] chr8 (7 HSPs)
chr8 (37-108)||(21268403-21268474)
chr8 (37-108)||(36377456-36377527)
chr8 (37-108)||(36379741-36379812)
chr8 (45-90)||(4876819-4876864)
chr8 (45-90)||(4879147-4879192)
chr8 (45-90)||(21268501-21268546)
chr8 (45-90)||(24519466-24519511)
[»] chr7 (12 HSPs)
chr7 (37-108)||(8733768-8733839)
chr7 (37-108)||(3932554-3932625)
chr7 (37-108)||(3934793-3934864)
chr7 (37-108)||(36464497-36464568)
chr7 (37-108)||(42678852-42678923)
chr7 (37-108)||(8414764-8414835)
chr7 (69-108)||(3052039-3052078)
chr7 (45-90)||(3932512-3932557)
chr7 (45-90)||(3934751-3934796)
chr7 (51-108)||(16497156-16497213)
chr7 (45-90)||(16497180-16497225)
chr7 (37-89)||(19786621-19786673)
[»] chr3 (1 HSPs)
chr3 (37-124)||(18966398-18966485)
[»] scaffold0050 (3 HSPs)
scaffold0050 (72-124)||(31475-31527)
scaffold0050 (72-124)||(29157-29209)
scaffold0050 (45-108)||(29143-29206)
[»] chr4 (7 HSPs)
chr4 (37-108)||(45166910-45166981)
chr4 (37-108)||(45162018-45162089)
chr4 (45-90)||(42468751-42468796)
chr4 (45-90)||(42471080-42471125)
chr4 (45-90)||(45161976-45162021)
chr4 (45-90)||(45166868-45166913)
chr4 (37-90)||(50856035-50856088)
[»] scaffold0008 (2 HSPs)
scaffold0008 (45-90)||(73074-73119)
scaffold0008 (71-108)||(73116-73153)
[»] chr6 (1 HSPs)
chr6 (42-90)||(21199146-21199194)


Alignment Details
Target: scaffold0312 (Bit Score: 390; Significance: 0; HSPs: 1)
Name: scaffold0312
Description:

Target: scaffold0312; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 18 - 429
Target Start/End: Complemental strand, 11377 - 10967
Alignment:
Q  18 agagaaaatagagaaacactctattagcttccttattattctttaacattatagagacttccatattattctttagtgttctagagacttctgcattttt 117  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11377 agagaaaatagagaaacactctagtagcttccttattattctttaacattatagagacttccatattattctttagtgttctagagacttctgcattttt 11278  T
Q  118 ctttagttctccatattattcttcatcaagcacacttgtaataatacatcatatagcaaatgtaaaatacttaaaactgaaagtaaaacaaagtgatagt 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||    
T  11277 ctttagttctccatattattcttcatcaagcacacttgtaataatacatcata--gcaaatgtaaaatacttaaaactgaaagtaaaacaaagtgatagt 11180  T
Q  218 tgtaaaatcctagaatcagtttcacagtttatttt-atactataaaaactgtgtaactattcttggatgtcaccaataggatttgtttgtttctacttgc 316  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11179 tgtaaaatcctagaatcagtttcacagtttatttttatactataaaaactgtgtaactattcttggatgtcaccaataggatttgtttgtttctacttgc 11080  T
Q  317 gaatccaaacaacatgatcctcaggtaggaggtgacaaactggaacagtcccaggttgaactttgagtacttgaaatgccaaatgttttgggttccattc 416  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11079 gaatccaaacaacatgatcctcaggtaggaggtgacaaactggaacagtcccaggttgaactttgagtacttgaaatgccaaatgttttgggttccattc 10980  T
Q  417 tgatgtatcagtg 429  Q
    |||||||||||||    
T  10979 tgatgtatcagtg 10967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 390; Significance: 0; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 18 - 429
Target Start/End: Original strand, 419194 - 419604
Alignment:
Q  18 agagaaaatagagaaacactctattagcttccttattattctttaacattatagagacttccatattattctttagtgttctagagacttctgcattttt 117  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  419194 agagaaaatagagaaacactctagtagcttccttattattctttaacattatagagacttccatattattctttagtgttctagagacttctgcattttt 419293  T
Q  118 ctttagttctccatattattcttcatcaagcacacttgtaataatacatcatatagcaaatgtaaaatacttaaaactgaaagtaaaacaaagtgatagt 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||    
T  419294 ctttagttctccatattattcttcatcaagcacacttgtaataatacatcata--gcaaatgtaaaatacttaaaactgaaagtaaaacaaagtgatagt 419391  T
Q  218 tgtaaaatcctagaatcagtttcacagtttatttt-atactataaaaactgtgtaactattcttggatgtcaccaataggatttgtttgtttctacttgc 316  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  419392 tgtaaaatcctagaatcagtttcacagtttatttttatactataaaaactgtgtaactattcttggatgtcaccaataggatttgtttgtttctacttgc 419491  T
Q  317 gaatccaaacaacatgatcctcaggtaggaggtgacaaactggaacagtcccaggttgaactttgagtacttgaaatgccaaatgttttgggttccattc 416  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  419492 gaatccaaacaacatgatcctcaggtaggaggtgacaaactggaacagtcccaggttgaactttgagtacttgaaatgccaaatgttttgggttccattc 419591  T
Q  417 tgatgtatcagtg 429  Q
    |||||||||||||    
T  419592 tgatgtatcagtg 419604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 146 - 429
Target Start/End: Complemental strand, 975838 - 975557
Alignment:
Q  146 agcacacttgtaataatacatcatatagcaaatgtaaaatacttaaaactgaaagtaaaacaaagtgatagttgtaaaatcctagaatcagtttcacagt 245  Q
    ||||||||||||||||| |||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  975838 agcacacttgtaataatccatcata--gcaaatgtaaaatacttaaaactgaaagtaaaacaaagtgatagttgtaaaatcctagaatcagtttcacagt 975741  T
Q  246 ttattttatactataaaaactgtgtaactattcttggatgtcaccaataggatttgtttgtttctacttgcgaatccaaacaacatgatcctcaggtagg 345  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  975740 ttattttatactataaaaactgtgtaactattcttggatgtcaccaataggatttgtttgtttctacttgcgaatccaaacaacatgatcctcaggtagg 975641  T
Q  346 aggtgacaaactggaacagtcccaggttgaactttgagtacttgaaatgccaaatgttttgggttccattctgatgtatcagtg 429  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  975640 aggtgacaaactggaacagtcccaggttgaactttgagtacttgaaatgccaaatgttttgggttccattctgatgtatcagtg 975557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 321 - 429
Target Start/End: Complemental strand, 949771 - 949663
Alignment:
Q  321 ccaaacaacatgatcctcaggtaggaggtgacaaactggaacagtcccaggttgaactttgagtacttgaaatgccaaatgttttgggttccattctgat 420  Q
    |||||||||||||||||  || |||| ||||||||  ||||||||||| |||||||||||||| |||||||| ||||||||||| |||||||||||||||    
T  949771 ccaaacaacatgatcctgtgggaggatgtgacaaataggaacagtccctggttgaactttgagcacttgaaaagccaaatgtttagggttccattctgat 949672  T
Q  421 gtatcagtg 429  Q
    |||||||||    
T  949671 gtatcagtg 949663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 321 - 429
Target Start/End: Complemental strand, 936862 - 936754
Alignment:
Q  321 ccaaacaacatgatcctcaggtaggaggtgacaaactggaacagtcccaggttgaactttgagtacttgaaatgccaaatgttttgggttccattctgat 420  Q
    ||||||||||||||||| ||| |||| |||||||||||||||||| ||||||||||| ||||| |||||||| ||||||||||| || ||||||| |||     
T  936862 ccaaacaacatgatcctgaggaaggaagtgacaaactggaacagttccaggttgaacattgagcacttgaaaagccaaatgtttaggattccattgtgaa 936763  T
Q  421 gtatcagtg 429  Q
    |||||||||    
T  936762 gtatcagtg 936754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 321 - 429
Target Start/End: Complemental strand, 942782 - 942674
Alignment:
Q  321 ccaaacaacatgatcctcaggtaggaggtgacaaactggaacagtcccaggttgaactttgagtacttgaaatgccaaatgttttgggttccattctgat 420  Q
    |||||||||||||||||  || |||| ||||||||  ||||||||||| ||||||||||| || || | ||| ||||||||||| || ||||||||||||    
T  942782 ccaaacaacatgatcctgtgggaggatgtgacaaataggaacagtccctggttgaactttaagcacataaaaagccaaatgtttaggattccattctgat 942683  T
Q  421 gtatcagtg 429  Q
    |||||||||    
T  942682 gtatcagtg 942674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 321 - 429
Target Start/End: Complemental strand, 960743 - 960635
Alignment:
Q  321 ccaaacaacatgatcctcaggtaggaggtgacaaactggaacagtcccaggttgaactttgagtacttgaaatgccaaatgttttgggttccattctgat 420  Q
    |||||||||||||||||  || |||| ||||||||  ||||||||||| ||||||||||| || || | ||| ||||||||||| || ||||||||||||    
T  960743 ccaaacaacatgatcctgtgggaggatgtgacaaataggaacagtccctggttgaactttaagcacataaaaagccaaatgtttaggattccattctgat 960644  T
Q  421 gtatcagtg 429  Q
    |||||||||    
T  960643 gtatcagtg 960635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 321 - 429
Target Start/End: Complemental strand, 972052 - 971944
Alignment:
Q  321 ccaaacaacatgatcctcaggtaggaggtgacaaactggaacagtcccaggttgaactttgagtacttgaaatgccaaatgttttgggttccattctgat 420  Q
    |||||||||||||||||  || |||| ||||||||  ||||||||||| ||||||||||| || || | ||| ||||||||||| || ||||||||||||    
T  972052 ccaaacaacatgatcctgtgggaggatgtgacaaataggaacagtccctggttgaactttaagcacataaaaagccaaatgtttaggattccattctgat 971953  T
Q  421 gtatcagtg 429  Q
    |||||||||    
T  971952 gtatcagtg 971944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 321 - 427
Target Start/End: Complemental strand, 924639 - 924533
Alignment:
Q  321 ccaaacaacatgatcctcaggtaggaggtgacaaactggaacagtcccaggttgaactttgagtacttgaaatgccaaatgttttgggttccattctgat 420  Q
    ||||||||||||| |||  |||| || ||| |||||||||||||| |||||||||| ||||||||||||||| ||||||||||| ||  |||||| |||     
T  924639 ccaaacaacatgaccctgtggtaagaagtggcaaactggaacagttccaggttgaattttgagtacttgaaaagccaaatgtttaggactccattgtgaa 924540  T
Q  421 gtatcag 427  Q
    |||||||    
T  924539 gtatcag 924533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 37 - 108
Target Start/End: Original strand, 29833349 - 29833420
Alignment:
Q  37 tctattagcttccttattattctttaacattatagagacttccatattattctttagtgttctagagacttc 108  Q
    |||| |||||||||||||||||  ||  ||| |||||||||| |||||||||||||||||||||||||||||    
T  29833349 tctagtagcttccttattattccctagtattctagagacttctatattattctttagtgttctagagacttc 29833420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 341 - 426
Target Start/End: Complemental strand, 916568 - 916483
Alignment:
Q  341 gtaggaggtgacaaactggaacagtcccaggttgaactttgagtacttgaaatgccaaatgttttgggttccattctgatgtatca 426  Q
    |||||| ||| |||||||||||||| ||||||||||| |||||||| ||||| |||||||| || ||  |||||| ||| ||||||    
T  916568 gtaggaagtggcaaactggaacagttccaggttgaaccttgagtacatgaaaagccaaatgcttgggactccattgtgaagtatca 916483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 304 - 427
Target Start/End: Complemental strand, 910123 - 910000
Alignment:
Q  304 tgtttctacttgcgaatccaaacaacatgatcctcaggtaggaggtgacaaactggaacagtcccaggttgaactttgagtacttgaaatgccaaatgtt 403  Q
    ||||| ||||||  || ||||||||| ||| |||   |||||| ||| |||||||||| ||| ||  ||||||||||||| |||||||| ||||||||||    
T  910123 tgtttttacttggaaaaccaaacaacttgaccctgttgtaggatgtggcaaactggaaaagttccttgttgaactttgagcacttgaaaagccaaatgtt 910024  T
Q  404 ttgggttccattctgatgtatcag 427  Q
    |  || |||||| ||| |||||||    
T  910023 taaggctccattgtgaagtatcag 910000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 37 - 104
Target Start/End: Original strand, 2404101 - 2404168
Alignment:
Q  37 tctattagcttccttattattctttaacattatagagacttccatattattctttagtgttctagaga 104  Q
    |||| |||||||||||||||||  ||  ||| |||||||||| ||||||||||||||| |||||||||    
T  2404101 tctagtagcttccttattattccctagtattctagagacttctatattattctttagtcttctagaga 2404168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 37 - 108
Target Start/End: Original strand, 734852 - 734923
Alignment:
Q  37 tctattagcttccttattattctttaacattatagagacttccatattattctttagtgttctagagacttc 108  Q
    |||| |||||||||| ||||||  ||  ||| |||||||||| ||||||||||||||| ||||| |||||||    
T  734852 tctagtagcttccttgttattccctagtattctagagacttctatattattctttagtcttctaaagacttc 734923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 37 - 94
Target Start/End: Original strand, 8933831 - 8933888
Alignment:
Q  37 tctattagcttccttattattctttaacattatagagacttccatattattctttagt 94  Q
    |||| |||||||||||||||||  ||  ||| |||||||||||||||| |||||||||    
T  8933831 tctaatagcttccttattattccatagtattttagagacttccatatttttctttagt 8933888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 42 - 108
Target Start/End: Original strand, 34576892 - 34576958
Alignment:
Q  42 tagcttccttattattctttaacattatagagacttccatattattctttagtgttctagagacttc 108  Q
    |||||||||  ||||||||||  ||| ||||||||||||||||||||||||||||||||||||||||    
T  34576892 tagcttcctcgttattctttagtattttagagacttccatattattctttagtgttctagagacttc 34576958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 46 - 108
Target Start/End: Complemental strand, 29801876 - 29801814
Alignment:
Q  46 ttccttattattctttaacattatagagacttccatattattctttagtgttctagagacttc 108  Q
    |||||||||||||||||  ||| |||| |||||| ||||||||||| ||||||||||||||||    
T  29801876 ttccttattattctttagtattctagatacttccctattattctttggtgttctagagacttc 29801814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 37 - 108
Target Start/End: Complemental strand, 31489077 - 31489006
Alignment:
Q  37 tctattagcttccttattattctttaacattatagagacttccatattattctttagtgttctagagacttc 108  Q
    |||| |||||||||||||||||  ||  ||| |||||||||| ||||||||||||||| || ||||||||||    
T  31489077 tctagtagcttccttattattccctagtattctagagacttctatattattctttagtcttttagagacttc 31489006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 42 - 103
Target Start/End: Complemental strand, 23859886 - 23859825
Alignment:
Q  42 tagcttccttattattctttaacattatagagacttccatattattctttagtgttctagag 103  Q
    ||||||||||||||||   ||  ||| |||||||| ||||||||||||||||||||||||||    
T  23859886 tagcttccttattatttcatagtattctagagactcccatattattctttagtgttctagag 23859825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 37 - 108
Target Start/End: Complemental strand, 31486793 - 31486722
Alignment:
Q  37 tctattagcttccttattattctttaacattatagagacttccatattattctttagtgttctagagacttc 108  Q
    |||| |||||||||||||||||  ||  ||| |||||||||| |||||||||| |||| |||||||| ||||    
T  31486793 tctagtagcttccttattattccctagtattctagagacttctatattattctctagtcttctagaggcttc 31486722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 69 - 105
Target Start/End: Complemental strand, 15729931 - 15729895
Alignment:
Q  69 tagagacttccatattattctttagtgttctagagac 105  Q
    |||||||||||| ||||||||||| ||||||||||||    
T  15729931 tagagacttccacattattctttattgttctagagac 15729895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 52 - 124
Target Start/End: Original strand, 1779748 - 1779820
Alignment:
Q  52 attattctttaacattatagagacttccatattattctttagtgttctagagacttctgcatttttctttagt 124  Q
    |||||||||||  ||| ||||||||||||||||||||||||||||| | ||||||||  ||||||||||||||    
T  1779748 attattctttagtattctagagacttccatattattctttagtgttatggagacttccacatttttctttagt 1779820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 37 - 108
Target Start/End: Original strand, 11852439 - 11852510
Alignment:
Q  37 tctattagcttccttattattctttaacattatagagacttccatattattctttagtgttctagagacttc 108  Q
    |||| |||||||||||||||||  ||  ||| |||||||||| ||||||||||||||| |||||||||||||    
T  11852439 tctagtagcttccttattattccctagtattctagagacttctatattattctttagtcttctagagacttc 11852510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 37 - 108
Target Start/End: Original strand, 23164514 - 23164585
Alignment:
Q  37 tctattagcttccttattattctttaacattatagagacttccatattattctttagtgttctagagacttc 108  Q
    |||| |||||||||||||||||  ||  ||| |||||||||| ||||||||||||||| |||||||||||||    
T  23164514 tctagtagcttccttattattccctagtattctagagacttctatattattctttagtcttctagagacttc 23164585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 37 - 108
Target Start/End: Original strand, 1779499 - 1779570
Alignment:
Q  37 tctattagcttccttattattctttaacattatagagacttccatattattctttagtgttctagagacttc 108  Q
    |||| |||||||||||||||||  ||  ||| |||||||||| ||||||||||||||| ||||||| |||||    
T  1779499 tctagtagcttccttattattccatagtattttagagacttctatattattctttagttttctagaaacttc 1779570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 37 - 108
Target Start/End: Original strand, 11850181 - 11850252
Alignment:
Q  37 tctattagcttccttattattctttaacattatagagacttccatattattctttagtgttctagagacttc 108  Q
    |||| |||||| ||||||||||  ||  ||| |||||||||| ||||||||||||||| |||||||||||||    
T  11850181 tctagtagctttcttattattccctagtattttagagacttctatattattctttagtcttctagagacttc 11850252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 37 - 108
Target Start/End: Complemental strand, 37207782 - 37207711
Alignment:
Q  37 tctattagcttccttattattctttaacattatagagacttccatattattctttagtgttctagagacttc 108  Q
    |||| |||||||||||||||||  ||  ||| || ||||||| ||||||||||||||| |||||||||||||    
T  37207782 tctagtagcttccttattattccctagtattctacagacttctatattattctttagtcttctagagacttc 37207711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 42 - 108
Target Start/End: Complemental strand, 22600817 - 22600751
Alignment:
Q  42 tagcttccttattattctttaacattatagagacttccatattattctttagtgttctagagacttc 108  Q
    |||||| ||||||||||  ||  ||| |||||||||| |||||||| |||||| |||||||||||||    
T  22600817 tagctttcttattattccatagtattctagagacttctatattattatttagtcttctagagacttc 22600751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 45 - 90
Target Start/End: Complemental strand, 37207684 - 37207639
Alignment:
Q  45 cttccttattattctttaacattatagagacttccatattattctt 90  Q
    ||||| |||||||||| | |||| ||||||||||||||||||||||    
T  37207684 cttccatattattcttcatcattctagagacttccatattattctt 37207639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 7e-16; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 37 - 108
Target Start/End: Original strand, 21268403 - 21268474
Alignment:
Q  37 tctattagcttccttattattctttaacattatagagacttccatattattctttagtgttctagagacttc 108  Q
    |||| |||||||||||||||||  ||  ||| |||||||||| |||||||||||||||||||||||||||||    
T  21268403 tctagtagcttccttattattccctagtattctagagacttctatattattctttagtgttctagagacttc 21268474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 37 - 108
Target Start/End: Original strand, 36377456 - 36377527
Alignment:
Q  37 tctattagcttccttattattctttaacattatagagacttccatattattctttagtgttctagagacttc 108  Q
    |||| |||||||||||||||||  ||  ||| |||||||||| ||||||||||||||| |||||||||||||    
T  36377456 tctagtagcttccttattattccctagtattctagagacttctatattattctttagtcttctagagacttc 36377527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 37 - 108
Target Start/End: Original strand, 36379741 - 36379812
Alignment:
Q  37 tctattagcttccttattattctttaacattatagagacttccatattattctttagtgttctagagacttc 108  Q
    |||| |||||||||||||||||  ||  ||| |||||||||| ||||||||||||||| |||||||||||||    
T  36379741 tctagtagcttccttattattccctagtattctagagacttctatattattctttagtcttctagagacttc 36379812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 45 - 90
Target Start/End: Complemental strand, 4876864 - 4876819
Alignment:
Q  45 cttccttattattctttaacattatagagacttccatattattctt 90  Q
    ||||| |||||||||| | |||| ||||||||||||||||||||||    
T  4876864 cttccatattattcttcaccattctagagacttccatattattctt 4876819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 45 - 90
Target Start/End: Complemental strand, 4879192 - 4879147
Alignment:
Q  45 cttccttattattctttaacattatagagacttccatattattctt 90  Q
    ||||| |||||||||| | |||| ||||||||||||||||||||||    
T  4879192 cttccatattattcttcaccattctagagacttccatattattctt 4879147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 45 - 90
Target Start/End: Original strand, 21268501 - 21268546
Alignment:
Q  45 cttccttattattctttaacattatagagacttccatattattctt 90  Q
    ||||| |||||||||| | |||| ||||||||||||||||||||||    
T  21268501 cttccatattattcttcaccattctagagacttccatattattctt 21268546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 45 - 90
Target Start/End: Original strand, 24519466 - 24519511
Alignment:
Q  45 cttccttattattctttaacattatagagacttccatattattctt 90  Q
    ||||| |||||||||| | |||| ||||||||||||||||||||||    
T  24519466 cttccatattattcttcaccattctagagacttccatattattctt 24519511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 7e-16; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 37 - 108
Target Start/End: Original strand, 8733768 - 8733839
Alignment:
Q  37 tctattagcttccttattattctttaacattatagagacttccatattattctttagtgttctagagacttc 108  Q
    |||| |||||||||||||||||  ||  ||| |||||||||| |||||||||||||||||||||||||||||    
T  8733768 tctagtagcttccttattattccctagtattctagagacttctatattattctttagtgttctagagacttc 8733839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 37 - 108
Target Start/End: Complemental strand, 3932625 - 3932554
Alignment:
Q  37 tctattagcttccttattattctttaacattatagagacttccatattattctttagtgttctagagacttc 108  Q
    |||| |||||||||||||||||  ||  ||| ||||| |||||||||||||||||||| |||||||||||||    
T  3932625 tctagtagcttccttattattccctagtattctagagtcttccatattattctttagtcttctagagacttc 3932554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 37 - 108
Target Start/End: Complemental strand, 3934864 - 3934793
Alignment:
Q  37 tctattagcttccttattattctttaacattatagagacttccatattattctttagtgttctagagacttc 108  Q
    |||| |||||||||||||||||  ||  ||| ||||| |||||||||||||||||||| |||||||||||||    
T  3934864 tctagtagcttccttattattccctagtattctagagtcttccatattattctttagtcttctagagacttc 3934793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 37 - 108
Target Start/End: Original strand, 36464497 - 36464568
Alignment:
Q  37 tctattagcttccttattattctttaacattatagagacttccatattattctttagtgttctagagacttc 108  Q
    |||| |||||||||||||||||  ||  ||| |||||||||| |||||||| ||||||||||||||||||||    
T  36464497 tctagtagcttccttattattccctagtattctagagacttctatattattatttagtgttctagagacttc 36464568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 37 - 108
Target Start/End: Original strand, 42678852 - 42678923
Alignment:
Q  37 tctattagcttccttattattctttaacattatagagacttccatattattctttagtgttctagagacttc 108  Q
    |||| |||||||||||||||||  ||  ||| |||||||||||||||||||||||||| ||||||| |||||    
T  42678852 tctagtagcttccttattattccatagtattttagagacttccatattattctttagttttctagaaacttc 42678923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 37 - 108
Target Start/End: Original strand, 8414764 - 8414835
Alignment:
Q  37 tctattagcttccttattattctttaacattatagagacttccatattattctttagtgttctagagacttc 108  Q
    |||| ||| |||||||||||||  ||  ||| |||||||||| ||||||||||||||||||||||| |||||    
T  8414764 tctagtagtttccttattattccctagtattctagagacttctatattattctttagtgttctagatacttc 8414835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 69 - 108
Target Start/End: Complemental strand, 3052078 - 3052039
Alignment:
Q  69 tagagacttccatattattctttagtgttctagagacttc 108  Q
    |||||||||| |||||||||||||||||| ||||||||||    
T  3052078 tagagacttctatattattctttagtgttatagagacttc 3052039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 45 - 90
Target Start/End: Complemental strand, 3932557 - 3932512
Alignment:
Q  45 cttccttattattctttaacattatagagacttccatattattctt 90  Q
    ||||| |||||||||| | |||| ||||||||||||||||||||||    
T  3932557 cttccatattattcttcatcattctagagacttccatattattctt 3932512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 45 - 90
Target Start/End: Complemental strand, 3934796 - 3934751
Alignment:
Q  45 cttccttattattctttaacattatagagacttccatattattctt 90  Q
    ||||| |||||||||| | |||| ||||||||||||||||||||||    
T  3934796 cttccatattattcttcatcattctagagacttccatattattctt 3934751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 51 - 108
Target Start/End: Original strand, 16497156 - 16497213
Alignment:
Q  51 tattattctttaacattatagagacttccatattattctttagtgttctagagacttc 108  Q
    |||||||||| | |||| |||||||||||||||||||||| |   |||||||||||||    
T  16497156 tattattcttgatcattctagagacttccatattattcttgatcattctagagacttc 16497213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 45 - 90
Target Start/End: Original strand, 16497180 - 16497225
Alignment:
Q  45 cttccttattattctttaacattatagagacttccatattattctt 90  Q
    ||||| |||||||||| | |||| ||||||||||||||||||||||    
T  16497180 cttccatattattcttgatcattctagagacttccatattattctt 16497225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 37 - 89
Target Start/End: Complemental strand, 19786673 - 19786621
Alignment:
Q  37 tctattagcttccttattattctttaacattatagagacttccatattattct 89  Q
    |||| |||||||||||||||||  ||| ||| |||||||||||| ||||||||    
T  19786673 tctagtagcttccttattattccctaatattctagagacttccacattattct 19786621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 37 - 124
Target Start/End: Original strand, 18966398 - 18966485
Alignment:
Q  37 tctattagcttccttattattctttaacattatagagacttccatattattctttagtgttctagagacttctgcatttttctttagt 124  Q
    |||| ||||| |||||||||| | ||  ||| ||||||||||| ||||||||||| ||||||||||||||||  |||| |||||||||    
T  18966398 tctagtagctaccttattattatctagtattctagagacttccctattattctttggtgttctagagacttccacattattctttagt 18966485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 72 - 124
Target Start/End: Complemental strand, 31527 - 31475
Alignment:
Q  72 agacttccatattattctttagtgttctagagacttctgcatttttctttagt 124  Q
    ||||||||||||||||||| |||||||||||||||||  |||| |||||||||    
T  31527 agacttccatattattcttgagtgttctagagacttccacattgttctttagt 31475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 72 - 124
Target Start/End: Complemental strand, 29209 - 29157
Alignment:
Q  72 agacttccatattattctttagtgttctagagacttctgcatttttctttagt 124  Q
    ||||||||||||||||||| | |||||||||||||||  |||| |||||||||    
T  29209 agacttccatattattcttgaatgttctagagacttccacattgttctttagt 29157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 45 - 108
Target Start/End: Complemental strand, 29206 - 29143
Alignment:
Q  45 cttccttattattctttaacattatagagacttccatattattctttagtgttctagagacttc 108  Q
    ||||| |||||||||| ||  || |||||||||||| ||| |||||||||||| ||||||||||    
T  29206 cttccatattattcttgaatgttctagagacttccacattgttctttagtgttttagagacttc 29143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 37 - 108
Target Start/End: Complemental strand, 45166981 - 45166910
Alignment:
Q  37 tctattagcttccttattattctttaacattatagagacttccatattattctttagtgttctagagacttc 108  Q
    |||| |||||||||||||||||  ||  ||| || ||||||| ||||||||||||||| |||||||||||||    
T  45166981 tctagtagcttccttattattccctagtattctaaagacttctatattattctttagtcttctagagacttc 45166910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 37 - 108
Target Start/End: Complemental strand, 45162089 - 45162018
Alignment:
Q  37 tctattagcttccttattattctttaacattatagagacttccatattattctttagtgttctagagacttc 108  Q
    |||| |||||| ||||||||||  ||  ||| || ||||||| ||||||||||||||| |||||||||||||    
T  45162089 tctagtagctttcttattattccctagtattctaaagacttctatattattctttagtcttctagagacttc 45162018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 45 - 90
Target Start/End: Original strand, 42468751 - 42468796
Alignment:
Q  45 cttccttattattctttaacattatagagacttccatattattctt 90  Q
    ||||| |||||||||| | |||| ||||||||||||||||||||||    
T  42468751 cttccatattattcttcaccattctagagacttccatattattctt 42468796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 45 - 90
Target Start/End: Original strand, 42471080 - 42471125
Alignment:
Q  45 cttccttattattctttaacattatagagacttccatattattctt 90  Q
    ||||| |||||||||| | |||| ||||||||||||||||||||||    
T  42471080 cttccatattattcttcaccattctagagacttccatattattctt 42471125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 45 - 90
Target Start/End: Complemental strand, 45162021 - 45161976
Alignment:
Q  45 cttccttattattctttaacattatagagacttccatattattctt 90  Q
    ||||| |||||||||| | |||| ||||||||||||||||||||||    
T  45162021 cttccatattattcttcaccattctagagacttccatattattctt 45161976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 45 - 90
Target Start/End: Complemental strand, 45166913 - 45166868
Alignment:
Q  45 cttccttattattctttaacattatagagacttccatattattctt 90  Q
    ||||| |||||||||| | |||| ||||||||||||||||||||||    
T  45166913 cttccatattattcttcaccattctagagacttccatattattctt 45166868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 37 - 90
Target Start/End: Original strand, 50856035 - 50856088
Alignment:
Q  37 tctattagcttccttattattctttaacattatagagacttccatattattctt 90  Q
    |||| |||||||||||||||||  ||  ||| ||||||||||||||||||||||    
T  50856035 tctagtagcttccttattattccatagtattctagagacttccatattattctt 50856088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 45 - 90
Target Start/End: Complemental strand, 73119 - 73074
Alignment:
Q  45 cttccttattattctttaacattatagagacttccatattattctt 90  Q
    ||||| |||||||||| | |||| ||||||||||||||||||||||    
T  73119 cttccatattattcttcaccattctagagacttccatattattctt 73074  T

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Target: scaffold0008; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 71 - 108
Target Start/End: Complemental strand, 73153 - 73116
Alignment:
Q  71 gagacttccatattattctttagtgttctagagacttc 108  Q
    |||||||| ||||||||||||||| |||||||||||||    
T  73153 gagacttctatattattctttagtcttctagagacttc 73116  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 42 - 90
Target Start/End: Complemental strand, 21199194 - 21199146
Alignment:
Q  42 tagcttccttattattctttaacattatagagacttccatattattctt 90  Q
    |||||||||||||||||  ||  ||| ||||||||||||||||||||||    
T  21199194 tagcttccttattattccatagtattctagagacttccatattattctt 21199146  T

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