View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10319_low_16 (Length: 412)

Name: NF10319_low_16
Description: NF10319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10319_low_16
NF10319_low_16
[»] chr3 (26 HSPs)
chr3 (122-239)||(52099110-52099227)
chr3 (18-97)||(52099838-52099917)
chr3 (319-408)||(52098942-52099038)
chr3 (49-99)||(52796832-52796882)
chr3 (52-101)||(29109235-29109284)
chr3 (122-235)||(7051267-7051382)
chr3 (50-101)||(36040322-36040373)
chr3 (48-101)||(43659035-43659088)
chr3 (48-101)||(50001953-50002006)
chr3 (49-97)||(27516321-27516369)
chr3 (49-101)||(39197953-39198005)
chr3 (54-101)||(14092991-14093038)
chr3 (328-379)||(30174411-30174462)
chr3 (48-86)||(28686608-28686646)
chr3 (52-97)||(4987010-4987055)
chr3 (48-101)||(28255262-28255315)
chr3 (48-101)||(44385348-44385401)
chr3 (47-99)||(50675870-50675922)
chr3 (54-101)||(33647287-33647334)
chr3 (54-101)||(52253892-52253939)
chr3 (55-101)||(37515986-37516031)
chr3 (55-101)||(43884900-43884946)
chr3 (55-101)||(44430029-44430075)
chr3 (52-100)||(1509346-1509394)
chr3 (53-97)||(18371092-18371136)
chr3 (49-97)||(44247724-44247772)
[»] chr1 (37 HSPs)
chr1 (122-234)||(18136560-18136673)
chr1 (141-235)||(11398102-11398197)
chr1 (328-392)||(11398283-11398347)
chr1 (322-399)||(18136434-18136512)
chr1 (52-101)||(2167797-2167846)
chr1 (335-399)||(52935170-52935234)
chr1 (335-399)||(52942805-52942869)
chr1 (335-399)||(52946213-52946277)
chr1 (122-203)||(6904575-6904659)
chr1 (52-101)||(30724587-30724636)
chr1 (53-102)||(45707960-45708009)
chr1 (49-97)||(43360267-43360315)
chr1 (50-97)||(10617331-10617378)
chr1 (50-101)||(11240727-11240778)
chr1 (50-97)||(26940431-26940478)
chr1 (52-95)||(32454634-32454677)
chr1 (47-97)||(50372768-50372818)
chr1 (52-97)||(23202006-23202051)
chr1 (52-97)||(29733298-29733343)
chr1 (49-101)||(32154079-32154131)
chr1 (54-106)||(45337545-45337597)
chr1 (56-95)||(13703276-13703315)
chr1 (328-383)||(31230344-31230399)
chr1 (55-101)||(27803236-27803282)
chr1 (49-102)||(11386381-11386434)
chr1 (52-97)||(46085521-46085566)
chr1 (50-97)||(34918458-34918505)
chr1 (52-102)||(5510343-5510393)
chr1 (49-95)||(12633223-12633269)
chr1 (50-92)||(29232641-29232683)
chr1 (52-102)||(47926740-47926790)
chr1 (52-101)||(19727771-19727820)
chr1 (46-91)||(30196318-30196363)
chr1 (53-86)||(36184782-36184815)
chr1 (322-371)||(41956096-41956145)
chr1 (52-97)||(46600185-46600230)
chr1 (49-101)||(20303474-20303526)
[»] chr4 (26 HSPs)
chr4 (122-235)||(17225062-17225177)
chr4 (52-101)||(22422736-22422785)
chr4 (48-97)||(34411318-34411367)
chr4 (335-399)||(40225492-40225556)
chr4 (50-101)||(39843634-39843685)
chr4 (50-101)||(41326542-41326593)
chr4 (58-101)||(56051164-56051207)
chr4 (48-94)||(53062065-53062111)
chr4 (48-101)||(470171-470224)
chr4 (48-97)||(25052346-25052394)
chr4 (321-371)||(5373891-5373941)
chr4 (52-101)||(42857520-42857569)
chr4 (56-101)||(44937019-44937064)
chr4 (52-101)||(56052730-56052779)
chr4 (49-97)||(11671910-11671958)
chr4 (54-97)||(34413067-34413110)
chr4 (58-101)||(40547717-40547760)
chr4 (52-86)||(8718616-8718650)
chr4 (51-97)||(50381858-50381904)
chr4 (52-101)||(28440459-28440508)
chr4 (49-86)||(35106276-35106313)
chr4 (56-101)||(55724380-55724425)
chr4 (49-101)||(31913973-31914025)
chr4 (54-94)||(33633069-33633109)
chr4 (50-94)||(44022750-44022794)
chr4 (50-94)||(47085895-47085939)
[»] chr8 (21 HSPs)
chr8 (122-211)||(6142053-6142143)
chr8 (49-101)||(2116602-2116654)
chr8 (48-101)||(12845667-12845720)
chr8 (49-101)||(44061182-44061234)
chr8 (52-101)||(33099689-33099738)
chr8 (48-97)||(43325446-43325495)
chr8 (54-94)||(3547236-3547276)
chr8 (50-101)||(31666158-31666209)
chr8 (52-101)||(9200237-9200286)
chr8 (55-94)||(9579395-9579434)
chr8 (58-101)||(13637208-13637251)
chr8 (58-101)||(13737621-13737664)
chr8 (58-101)||(19438970-19439013)
chr8 (58-101)||(19575119-19575162)
chr8 (50-97)||(33449449-33449496)
chr8 (58-101)||(34649700-34649743)
chr8 (52-94)||(13884858-13884900)
chr8 (52-97)||(26748048-26748093)
chr8 (56-97)||(33968843-33968884)
chr8 (49-101)||(2822308-2822360)
chr8 (47-95)||(25563083-25563131)
[»] chr7 (29 HSPs)
chr7 (122-235)||(47762231-47762345)
chr7 (335-399)||(47762073-47762137)
chr7 (52-102)||(45657779-45657829)
chr7 (171-230)||(20290530-20290590)
chr7 (54-101)||(11315527-11315574)
chr7 (52-101)||(48402504-48402553)
chr7 (50-97)||(41203988-41204035)
chr7 (52-101)||(34996836-34996885)
chr7 (50-94)||(20383934-20383978)
chr7 (58-97)||(3563120-3563159)
chr7 (58-101)||(37545394-37545437)
chr7 (54-101)||(40786409-40786456)
chr7 (52-97)||(10048281-10048326)
chr7 (49-94)||(33614078-33614123)
chr7 (44-101)||(35395997-35396054)
chr7 (49-86)||(38369881-38369918)
chr7 (52-97)||(41816531-41816576)
chr7 (52-101)||(44062992-44063041)
chr7 (48-97)||(46290417-46290466)
chr7 (58-102)||(38319732-38319776)
chr7 (54-101)||(19822911-19822958)
chr7 (58-101)||(27542802-27542845)
chr7 (50-97)||(37031201-37031248)
chr7 (56-97)||(3633012-3633053)
chr7 (49-94)||(22643869-22643914)
chr7 (52-97)||(49024147-49024192)
chr7 (69-101)||(18534202-18534234)
chr7 (49-101)||(23097369-23097421)
chr7 (54-86)||(45331014-45331046)
[»] chr5 (20 HSPs)
chr5 (321-399)||(10548192-10548270)
chr5 (52-101)||(11447318-11447367)
chr5 (53-101)||(1157071-1157119)
chr5 (49-101)||(17888371-17888423)
chr5 (50-101)||(27878593-27878644)
chr5 (52-101)||(8205913-8205962)
chr5 (52-101)||(26647830-26647879)
chr5 (52-101)||(26919415-26919464)
chr5 (49-97)||(38503508-38503556)
chr5 (46-97)||(10830367-10830418)
chr5 (51-97)||(9780160-9780206)
chr5 (321-371)||(20319537-20319587)
chr5 (49-102)||(37226116-37226169)
chr5 (52-96)||(233417-233461)
chr5 (49-97)||(29801652-29801700)
chr5 (51-97)||(2683685-2683731)
chr5 (52-102)||(7529670-7529720)
chr5 (52-94)||(19962475-19962517)
chr5 (54-95)||(8223814-8223855)
chr5 (52-93)||(39039803-39039844)
[»] chr6 (5 HSPs)
chr6 (48-102)||(251793-251847)
chr6 (50-101)||(3711424-3711475)
chr6 (55-101)||(7341309-7341355)
chr6 (49-102)||(33504521-33504574)
chr6 (58-101)||(13887250-13887293)
[»] scaffold0072 (1 HSPs)
scaffold0072 (49-101)||(46509-46561)
[»] scaffold0380 (1 HSPs)
scaffold0380 (50-101)||(43-94)
[»] scaffold0590 (2 HSPs)
scaffold0590 (321-399)||(5021-5101)
scaffold0590 (323-384)||(7701-7762)
[»] chr2 (20 HSPs)
chr2 (122-235)||(42735440-42735555)
chr2 (52-101)||(3207207-3207256)
chr2 (52-101)||(27337184-27337233)
chr2 (53-101)||(37472180-37472228)
chr2 (54-101)||(10913453-10913500)
chr2 (331-399)||(42735280-42735350)
chr2 (52-97)||(41322061-41322106)
chr2 (49-97)||(38376529-38376577)
chr2 (49-97)||(42578577-42578625)
chr2 (48-101)||(4843460-4843513)
chr2 (52-101)||(13070456-13070505)
chr2 (52-101)||(31570455-31570504)
chr2 (54-101)||(2020135-2020182)
chr2 (51-101)||(33618047-33618097)
chr2 (52-101)||(1777347-1777396)
chr2 (52-101)||(4681478-4681527)
chr2 (49-94)||(9225198-9225243)
chr2 (50-91)||(39640452-39640493)
chr2 (48-97)||(39676224-39676273)
chr2 (61-101)||(13979174-13979214)
[»] scaffold0069 (1 HSPs)
scaffold0069 (55-101)||(35962-36008)
[»] scaffold0459 (1 HSPs)
scaffold0459 (55-101)||(12341-12387)
[»] scaffold0366 (2 HSPs)
scaffold0366 (55-101)||(9982-10028)
scaffold0366 (55-101)||(13648-13694)
[»] scaffold0100 (1 HSPs)
scaffold0100 (53-101)||(44388-44436)
[»] scaffold0385 (1 HSPs)
scaffold0385 (50-97)||(11904-11950)
[»] scaffold0031 (1 HSPs)
scaffold0031 (48-97)||(1480-1529)
[»] scaffold0060 (1 HSPs)
scaffold0060 (51-97)||(67909-67955)
[»] scaffold0287 (1 HSPs)
scaffold0287 (56-97)||(13032-13073)


Alignment Details
Target: chr3 (Bit Score: 114; Significance: 1e-57; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 122 - 239
Target Start/End: Complemental strand, 52099227 - 52099110
Alignment:
Q  122 aatggatcaaattataatgaagacaattgttgctattgtattgatttgaacaatgaatccaactcccagtgtataaactaaggaggaatacaaccaatta 221  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  52099227 aatggatcaaattataatgaagacaattgttgctattgtattgatttgaacaatgaatccaactcctagtgtataaactaaggaggaatacaaccaatta 52099128  T
Q  222 gcaagtaaaataactatt 239  Q
    ||||||||||||||||||    
T  52099127 gcaagtaaaataactatt 52099110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 18 - 97
Target Start/End: Complemental strand, 52099917 - 52099838
Alignment:
Q  18 attagtatccacaattgtgtataggataatttttagggtgtgtttggtttggaagagaagttgtgaagaaagaaataggt 97  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| | ||||||||    
T  52099917 attagtatccacaattgtgtataggataacttttagggtgtgtttggtttagaagagaagttgtgaagagaaaaataggt 52099838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 319 - 408
Target Start/End: Complemental strand, 52099038 - 52098942
Alignment:
Q  319 taacacatattccatgcttatttccttgacttttcttat-------atttataagggtccatattcctattttctataatgtcccttcatctcactc 408  Q
    |||||||||||||||||||||||| ||||| ||||||||       ||||||||||||| |||||||||||||||||||||||| ||| ||| ||||    
T  52099038 taacacatattccatgcttatttctttgacctttcttatttcttatatttataagggtctatattcctattttctataatgtcctttcttctaactc 52098942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 49 - 99
Target Start/End: Complemental strand, 52796882 - 52796832
Alignment:
Q  49 tttagggtgtgtttggtttggaagagaagttgtgaagaaagaaataggtga 99  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  52796882 tttagggtgtgtttggtttggaagagaagttgtgaagagagaaataggtga 52796832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 52 - 101
Target Start/End: Original strand, 29109235 - 29109284
Alignment:
Q  52 agggtgtgtttggtttggaagagaagttgtgaagaaagaaataggtgaga 101  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  29109235 agggtgtgtttggtttggaagagaagttgtgaagagagaaataggtgaga 29109284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 122 - 235
Target Start/End: Complemental strand, 7051382 - 7051267
Alignment:
Q  122 aatggatcaaattataatgaagacaattgttgctattgtattgatt-tgaacaatgaatccaactcccagtgtataaactaaggaggaata-caaccaat 219  Q
    ||||||||||||| |||   ||| |||||||||||||| ||||| | |||||||| ||| |||||||||  |||||||| ||||| ||||| ||||||||    
T  7051382 aatggatcaaattgtaacagagataattgttgctattgcattgaatatgaacaatcaattcaactcccacagtataaacaaaggacgaataacaaccaat 7051283  T
Q  220 tagcaagtaaaataac 235  Q
    | ||||||||||||||    
T  7051282 ttgcaagtaaaataac 7051267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 50 - 101
Target Start/End: Original strand, 36040322 - 36040373
Alignment:
Q  50 ttagggtgtgtttggtttggaagagaagttgtgaagaaagaaataggtgaga 101  Q
    ||||||||||||||||| ||||||||||||||||||| ||||||||||||||    
T  36040322 ttagggtgtgtttggttaggaagagaagttgtgaagagagaaataggtgaga 36040373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 48 - 101
Target Start/End: Original strand, 43659035 - 43659088
Alignment:
Q  48 ttttagggtgtgtttggtttggaagagaagttgtgaagaaagaaataggtgaga 101  Q
    |||||||||||||||||||| |||||||||||||||||| ||||||| ||||||    
T  43659035 ttttagggtgtgtttggtttagaagagaagttgtgaagagagaaataagtgaga 43659088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 48 - 101
Target Start/End: Complemental strand, 50002006 - 50001953
Alignment:
Q  48 ttttagggtgtgtttggtttggaagagaagttgtgaagaaagaaataggtgaga 101  Q
    ||||||||| |||||||||||||||||||||||| |||| ||||||||||||||    
T  50002006 ttttagggtatgtttggtttggaagagaagttgtaaagagagaaataggtgaga 50001953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 49 - 97
Target Start/End: Complemental strand, 27516369 - 27516321
Alignment:
Q  49 tttagggtgtgtttggtttggaagagaagttgtgaagaaagaaataggt 97  Q
    |||||||||||||||||||||||||||||||| ||||| ||||||||||    
T  27516369 tttagggtgtgtttggtttggaagagaagttgagaagagagaaataggt 27516321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 49 - 101
Target Start/End: Complemental strand, 39198005 - 39197953
Alignment:
Q  49 tttagggtgtgtttggtttggaagagaagttgtgaagaaagaaataggtgaga 101  Q
    ||||||||||||||||||| ||||||||||||| |||| ||||| ||||||||    
T  39198005 tttagggtgtgtttggtttagaagagaagttgtaaagagagaaagaggtgaga 39197953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 54 - 101
Target Start/End: Complemental strand, 14093038 - 14092991
Alignment:
Q  54 ggtgtgtttggtttggaagagaagttgtgaagaaagaaataggtgaga 101  Q
    |||||||||||||||||| |||||||||||||| ||||| ||||||||    
T  14093038 ggtgtgtttggtttggaaaagaagttgtgaagagagaaagaggtgaga 14092991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 328 - 379
Target Start/End: Original strand, 30174411 - 30174462
Alignment:
Q  328 ttccatgcttatttccttgacttttcttatatttataagggtccatattcct 379  Q
    ||||||||||||||||||| |||||||  ||||||||||| |||||||||||    
T  30174411 ttccatgcttatttccttggcttttctcttatttataaggatccatattcct 30174462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 48 - 86
Target Start/End: Complemental strand, 28686646 - 28686608
Alignment:
Q  48 ttttagggtgtgtttggtttggaagagaagttgtgaaga 86  Q
    ||||||||||||||||||||||||||||| |||||||||    
T  28686646 ttttagggtgtgtttggtttggaagagaaattgtgaaga 28686608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 52 - 97
Target Start/End: Complemental strand, 4987055 - 4987010
Alignment:
Q  52 agggtgtgtttggtttggaagagaagttgtgaagaaagaaataggt 97  Q
    ||||||||||||||||||||||||||||| ||||| |||| |||||    
T  4987055 agggtgtgtttggtttggaagagaagttgagaagagagaagtaggt 4987010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 48 - 101
Target Start/End: Complemental strand, 28255315 - 28255262
Alignment:
Q  48 ttttagggtgtgtttggtttggaagagaagttgtgaagaaagaaataggtgaga 101  Q
    ||||||||||||||||| |  |||||||| ||||||||| ||||||||||||||    
T  28255315 ttttagggtgtgtttggctaagaagagaaattgtgaagagagaaataggtgaga 28255262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 48 - 101
Target Start/End: Complemental strand, 44385401 - 44385348
Alignment:
Q  48 ttttagggtgtgtttggtttggaagagaagttgtgaagaaagaaataggtgaga 101  Q
    ||||||||| |||||||||||||||||||| |||||||| ||| | ||||||||    
T  44385401 ttttagggtttgtttggtttggaagagaagctgtgaagagagagacaggtgaga 44385348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 47 - 99
Target Start/End: Complemental strand, 50675922 - 50675870
Alignment:
Q  47 tttttagggtgtgtttggtttggaagagaagttgtgaagaaagaaataggtga 99  Q
    |||||||| |||||||||||||||||| |||||| ||||| ||||||| ||||    
T  50675922 tttttaggttgtgtttggtttggaagataagttgggaagagagaaataagtga 50675870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 54 - 101
Target Start/End: Complemental strand, 33647334 - 33647287
Alignment:
Q  54 ggtgtgtttggtttggaagagaagttgtgaagaaagaaataggtgaga 101  Q
    ||||||||||||| ||||||||| ||||||||| ||||| ||||||||    
T  33647334 ggtgtgtttggttgggaagagaaattgtgaagagagaaagaggtgaga 33647287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 54 - 101
Target Start/End: Complemental strand, 52253939 - 52253892
Alignment:
Q  54 ggtgtgtttggtttggaagagaagttgtgaagaaagaaataggtgaga 101  Q
    ||||||||||||||  ||||||||||||||||| ||||||| ||||||    
T  52253939 ggtgtgtttggtttaaaagagaagttgtgaagagagaaatatgtgaga 52253892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 55 - 101
Target Start/End: Original strand, 37515986 - 37516031
Alignment:
Q  55 gtgtgtttggtttggaagagaagttgtgaagaaagaaataggtgaga 101  Q
    |||||||||||| |||||||||| |||||||| ||||||||||||||    
T  37515986 gtgtgtttggtt-ggaagagaagatgtgaagagagaaataggtgaga 37516031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 55 - 101
Target Start/End: Original strand, 43884900 - 43884946
Alignment:
Q  55 gtgtgtttggtttggaagagaagttgtgaagaaagaaataggtgaga 101  Q
    ||||||||||||  |||||||| ||||||||| ||||||||||||||    
T  43884900 gtgtgtttggttaagaagagaaattgtgaagagagaaataggtgaga 43884946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 55 - 101
Target Start/End: Original strand, 44430029 - 44430075
Alignment:
Q  55 gtgtgtttggtttggaagagaagttgtgaagaaagaaataggtgaga 101  Q
    ||||||||||||| ||||| ||||| |||||||||||||| ||||||    
T  44430029 gtgtgtttggtttagaagataagttatgaagaaagaaataagtgaga 44430075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 52 - 100
Target Start/End: Complemental strand, 1509394 - 1509346
Alignment:
Q  52 agggtgtgtttggtttggaagagaagttgtgaagaaagaaataggtgag 100  Q
    ||||| ||||||||| |||||||||||||| |||| ||||| |||||||    
T  1509394 agggtttgtttggttgggaagagaagttgtaaagagagaaaaaggtgag 1509346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 53 - 97
Target Start/End: Complemental strand, 18371136 - 18371092
Alignment:
Q  53 gggtgtgtttggtttggaagagaagttgtgaagaaagaaataggt 97  Q
    ||||||||||||| | |||||||||||||||||| |||| |||||    
T  18371136 gggtgtgtttggtatagaagagaagttgtgaagagagaagtaggt 18371092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 49 - 97
Target Start/End: Complemental strand, 44247772 - 44247724
Alignment:
Q  49 tttagggtgtgtttggtttggaagagaagttgtgaagaaagaaataggt 97  Q
    |||||| | |||||||||  |||||||||||||||||| ||||||||||    
T  44247772 tttaggatatgtttggttgagaagagaagttgtgaagagagaaataggt 44247724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 86; Significance: 6e-41; HSPs: 37)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 122 - 234
Target Start/End: Complemental strand, 18136673 - 18136560
Alignment:
Q  122 aatggatcaaattataatgaagacaattgttgctattgtattgatt-tgaacaatgaatccaactcccagtgtataaactaaggaggaatacaaccaatt 220  Q
    |||||||||||||||||||||||||||||||||||||| ||| | | ||||||||||||| |||||||||||| ||||||||||||||||||||||||||    
T  18136673 aatggatcaaattataatgaagacaattgttgctattgcatttaatgtgaacaatgaatcaaactcccagtgtgtaaactaaggaggaatacaaccaatt 18136574  T
Q  221 agcaagtaaaataa 234  Q
    ||||||||||||||    
T  18136573 agcaagtaaaataa 18136560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 141 - 235
Target Start/End: Original strand, 11398102 - 11398197
Alignment:
Q  141 aagacaattgttgctattgtattgatttgaacaatgaatccaactcccagtgtataaactaaggaggaat-acaaccaattagcaagtaaaataac 235  Q
    |||| |||||||||||||||||| ||||||||||| ||| |||||||||||||||||||||||||||||| |||||||||| ||||||||||||||    
T  11398102 aagataattgttgctattgtattaatttgaacaatcaattcaactcccagtgtataaactaaggaggaataacaaccaatttgcaagtaaaataac 11398197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 328 - 392
Target Start/End: Original strand, 11398283 - 11398347
Alignment:
Q  328 ttccatgcttatttccttgacttttcttatatttataagggtccatattcctattttctataatg 392  Q
    |||||| |||||||||||| ||||||| |||||||||||||||||||||||||||||| ||||||    
T  11398283 ttccatccttatttccttggcttttctcatatttataagggtccatattcctattttccataatg 11398347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 322 - 399
Target Start/End: Complemental strand, 18136512 - 18136434
Alignment:
Q  322 cacatattccatgcttatttccttgactttt-cttatatttataagggtccatattcctattttctataatgtcccttc 399  Q
    |||||||| |||||||||||||||| ||||| || |||||||||||||||||||||||||||| | |||||| ||||||    
T  18136512 cacatatttcatgcttatttccttggctttttctcatatttataagggtccatattcctatttcccataatgccccttc 18136434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 52 - 101
Target Start/End: Complemental strand, 2167846 - 2167797
Alignment:
Q  52 agggtgtgtttggtttggaagagaagttgtgaagaaagaaataggtgaga 101  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  2167846 agggtgtgtttggtttggaagagaagttgtgaagagagaaataggtgaga 2167797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 335 - 399
Target Start/End: Complemental strand, 52935234 - 52935170
Alignment:
Q  335 cttatttccttgacttttcttatatttataagggtccatattcctattttctataatgtcccttc 399  Q
    |||||||||||| ||||||| |||||||||||||||||||||||||||| | |||||| ||||||    
T  52935234 cttatttccttggcttttctcatatttataagggtccatattcctatttcccataatgccccttc 52935170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 335 - 399
Target Start/End: Complemental strand, 52942869 - 52942805
Alignment:
Q  335 cttatttccttgacttttcttatatttataagggtccatattcctattttctataatgtcccttc 399  Q
    |||||||||||| ||||||| |||||||||||||||||||||||||||| | |||||| ||||||    
T  52942869 cttatttccttggcttttctcatatttataagggtccatattcctatttcccataatgccccttc 52942805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 335 - 399
Target Start/End: Complemental strand, 52946277 - 52946213
Alignment:
Q  335 cttatttccttgacttttcttatatttataagggtccatattcctattttctataatgtcccttc 399  Q
    |||||||||||| ||||||| |||||||||||||||||||||||||||| | |||||| ||||||    
T  52946277 cttatttccttggcttttctcatatttataagggtccatattcctatttcccataatgccccttc 52946213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 122 - 203
Target Start/End: Complemental strand, 6904659 - 6904575
Alignment:
Q  122 aatggatcaaattataatgaagacaattgttgctattgtattg-atttga--acaatgaatccaactcccagtgtataaactaag 203  Q
    ||||||||||||| |||||||||||| |||||||||||||||| || |||  ||||| ||||||| ||||||||||||| |||||    
T  6904659 aatggatcaaattgtaatgaagacaaatgttgctattgtattgaatatgatcacaatcaatccaattcccagtgtataagctaag 6904575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 52 - 101
Target Start/End: Original strand, 30724587 - 30724636
Alignment:
Q  52 agggtgtgtttggtttggaagagaagttgtgaagaaagaaataggtgaga 101  Q
    |||||||||||||||||||||||||||||| |||| ||||||||||||||    
T  30724587 agggtgtgtttggtttggaagagaagttgtaaagagagaaataggtgaga 30724636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 53 - 102
Target Start/End: Original strand, 45707960 - 45708009
Alignment:
Q  53 gggtgtgtttggtttggaagagaagttgtgaagaaagaaataggtgagaa 102  Q
    |||||||||||||||||||||||||||||||||| ||||||| |||||||    
T  45707960 gggtgtgtttggtttggaagagaagttgtgaagagagaaatatgtgagaa 45708009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 49 - 97
Target Start/End: Original strand, 43360267 - 43360315
Alignment:
Q  49 tttagggtgtgtttggtttggaagagaagttgtgaagaaagaaataggt 97  Q
    |||||||| ||||||||||||||||||||||||||||| ||||||||||    
T  43360267 tttagggtatgtttggtttggaagagaagttgtgaagagagaaataggt 43360315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 50 - 97
Target Start/End: Complemental strand, 10617378 - 10617331
Alignment:
Q  50 ttagggtgtgtttggtttggaagagaagttgtgaagaaagaaataggt 97  Q
    |||||||||||||||| |||||||||||||||||||| ||||||||||    
T  10617378 ttagggtgtgtttggtatggaagagaagttgtgaagagagaaataggt 10617331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 50 - 101
Target Start/End: Complemental strand, 11240778 - 11240727
Alignment:
Q  50 ttagggtgtgtttggtttggaagagaagttgtgaagaaagaaataggtgaga 101  Q
    |||||||||||||||||| || ||||||||||||||| ||||||||||||||    
T  11240778 ttagggtgtgtttggtttagaggagaagttgtgaagagagaaataggtgaga 11240727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 50 - 97
Target Start/End: Complemental strand, 26940478 - 26940431
Alignment:
Q  50 ttagggtgtgtttggtttggaagagaagttgtgaagaaagaaataggt 97  Q
    ||||||| ||||||||||||||||||||||||||||| ||||||||||    
T  26940478 ttagggtatgtttggtttggaagagaagttgtgaagatagaaataggt 26940431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 52 - 95
Target Start/End: Complemental strand, 32454677 - 32454634
Alignment:
Q  52 agggtgtgtttggtttggaagagaagttgtgaagaaagaaatag 95  Q
    ||||||||||||||||||||||||| ||||||||||||||||||    
T  32454677 agggtgtgtttggtttggaagagaaattgtgaagaaagaaatag 32454634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 47 - 97
Target Start/End: Original strand, 50372768 - 50372818
Alignment:
Q  47 tttttagggtgtgtttggtttggaagagaagttgtgaagaaagaaataggt 97  Q
    ||||||||||||||||||||| |||||||| ||||||||| ||||||||||    
T  50372768 tttttagggtgtgtttggtttagaagagaatttgtgaagagagaaataggt 50372818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 52 - 97
Target Start/End: Complemental strand, 23202051 - 23202006
Alignment:
Q  52 agggtgtgtttggtttggaagagaagttgtgaagaaagaaataggt 97  Q
    ||||| ||||||||||||||||||||||||||||| ||||||||||    
T  23202051 agggtatgtttggtttggaagagaagttgtgaagagagaaataggt 23202006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 52 - 97
Target Start/End: Complemental strand, 29733343 - 29733298
Alignment:
Q  52 agggtgtgtttggtttggaagagaagttgtgaagaaagaaataggt 97  Q
    |||||||||||||| |||||||||||||||||||| ||||||||||    
T  29733343 agggtgtgtttggtatggaagagaagttgtgaagagagaaataggt 29733298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 49 - 101
Target Start/End: Original strand, 32154079 - 32154131
Alignment:
Q  49 tttagggtgtgtttggtttggaagagaagttgtgaagaaagaaataggtgaga 101  Q
    |||||||||||||||| ||| ||||||| ||||||||| ||||||||||||||    
T  32154079 tttagggtgtgtttggattgtaagagaaattgtgaagagagaaataggtgaga 32154131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 54 - 106
Target Start/End: Original strand, 45337545 - 45337597
Alignment:
Q  54 ggtgtgtttggtttggaagagaagttgtgaagaaagaaataggtgagaatata 106  Q
    |||||||||||||| ||||||| |||||||||| |||||||||||||| ||||    
T  45337545 ggtgtgtttggtttagaagagatgttgtgaagagagaaataggtgagagtata 45337597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 56 - 95
Target Start/End: Complemental strand, 13703315 - 13703276
Alignment:
Q  56 tgtgtttggtttggaagagaagttgtgaagaaagaaatag 95  Q
    ||||||||||||||||||||||||||||||| ||||||||    
T  13703315 tgtgtttggtttggaagagaagttgtgaagagagaaatag 13703276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 328 - 383
Target Start/End: Original strand, 31230344 - 31230399
Alignment:
Q  328 ttccatgcttatttccttgacttttcttatatttataagggtccatattcctattt 383  Q
    ||||||||||||| | |||  |||||| ||||||||||||||||||||||||||||    
T  31230344 ttccatgcttattccattggtttttctcatatttataagggtccatattcctattt 31230399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 55 - 101
Target Start/End: Complemental strand, 27803282 - 27803236
Alignment:
Q  55 gtgtgtttggtttggaagagaagttgtgaagaaagaaataggtgaga 101  Q
    ||||||||||||| ||||||||||||| |||| ||||||||||||||    
T  27803282 gtgtgtttggtttagaagagaagttgtaaagagagaaataggtgaga 27803236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 49 - 102
Target Start/End: Original strand, 11386381 - 11386434
Alignment:
Q  49 tttagggtgtgtttggtttggaagagaagttgtgaagaaagaaataggtgagaa 102  Q
    |||| |||||||||||||| ||||||| |||||||||| ||||||| |||||||    
T  11386381 tttaaggtgtgtttggtttagaagagacgttgtgaagagagaaatatgtgagaa 11386434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 52 - 97
Target Start/End: Original strand, 46085521 - 46085566
Alignment:
Q  52 agggtgtgtttggtttggaagagaagttgtgaagaaagaaataggt 97  Q
    |||||||||||||||| ||||||||||| |||||| ||||||||||    
T  46085521 agggtgtgtttggtttagaagagaagttatgaagagagaaataggt 46085566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 50 - 97
Target Start/End: Complemental strand, 34918505 - 34918458
Alignment:
Q  50 ttagggtgtgtttggtttggaagagaagttgtgaagaaagaaataggt 97  Q
    |||||||||||||||||| | |||||||||||||| | ||||||||||    
T  34918505 ttagggtgtgtttggtttaggagagaagttgtgaatagagaaataggt 34918458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 52 - 102
Target Start/End: Original strand, 5510343 - 5510393
Alignment:
Q  52 agggtgtgtttggtttggaagagaagttgtgaagaaagaaataggtgagaa 102  Q
    |||||||||||||||  |||||||| ||||||||| | |||||||||||||    
T  5510343 agggtgtgtttggttgagaagagaaattgtgaagagataaataggtgagaa 5510393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 49 - 95
Target Start/End: Complemental strand, 12633269 - 12633223
Alignment:
Q  49 tttagggtgtgtttggtttggaagagaagttgtgaagaaagaaatag 95  Q
    |||||||| |||||||||||||||| |||||||||| | ||||||||    
T  12633269 tttagggtctgtttggtttggaagacaagttgtgaatagagaaatag 12633223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 50 - 92
Target Start/End: Complemental strand, 29232683 - 29232641
Alignment:
Q  50 ttagggtgtgtttggtttggaagagaagttgtgaagaaagaaa 92  Q
    |||||||||||||||||| | |||||||||||||||| |||||    
T  29232683 ttagggtgtgtttggtttaggagagaagttgtgaagagagaaa 29232641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 52 - 102
Target Start/End: Complemental strand, 47926790 - 47926740
Alignment:
Q  52 agggtgtgtttggtttggaagagaagttgtgaagaaagaaataggtgagaa 102  Q
    |||||||||||||||| ||| ||||| || ||| |||||||||||||||||    
T  47926790 agggtgtgtttggtttagaaaagaagatgcgaataaagaaataggtgagaa 47926740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 101
Target Start/End: Original strand, 19727771 - 19727820
Alignment:
Q  52 agggtgtgtttggtttggaagagaagttgtgaagaaagaaataggtgaga 101  Q
    |||||||||||||||   ||||||||||||||||| ||||||| ||||||    
T  19727771 agggtgtgtttggttctcaagagaagttgtgaagagagaaatatgtgaga 19727820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 91
Target Start/End: Complemental strand, 30196363 - 30196318
Alignment:
Q  46 atttttagggtgtgtttggtttggaagagaagttgtgaagaaagaa 91  Q
    ||||||| ||||||||||||| |||||| |||||||||||| ||||    
T  30196363 atttttatggtgtgtttggttaggaagataagttgtgaagagagaa 30196318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 86
Target Start/End: Complemental strand, 36184815 - 36184782
Alignment:
Q  53 gggtgtgtttggtttggaagagaagttgtgaaga 86  Q
    ||||||||||||||| ||||||||||||||||||    
T  36184815 gggtgtgtttggtttagaagagaagttgtgaaga 36184782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 322 - 371
Target Start/End: Complemental strand, 41956145 - 41956096
Alignment:
Q  322 cacatattccatgcttatttccttgacttttcttatatttataagggtcc 371  Q
    |||| ||| ||||| ||||||||||||||||||  |||||||||||||||    
T  41956145 cacacatttcatgcctatttccttgacttttctcttatttataagggtcc 41956096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 97
Target Start/End: Original strand, 46600185 - 46600230
Alignment:
Q  52 agggtgtgtttggtttggaagagaagttgtgaagaaagaaataggt 97  Q
    |||||||||||||||| ||||||||||| |||||| ||| ||||||    
T  46600185 agggtgtgtttggtttagaagagaagttatgaagagagagataggt 46600230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 49 - 101
Target Start/End: Original strand, 20303474 - 20303526
Alignment:
Q  49 tttagggtgtgtttggtttggaagagaagttgtgaagaaagaaataggtgaga 101  Q
    |||| |||||||||||||   ||||||| ||||||||| ||||||||||||||    
T  20303474 tttatggtgtgtttggttcacaagagaaattgtgaagagagaaataggtgaga 20303526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 64; Significance: 7e-28; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 122 - 235
Target Start/End: Original strand, 17225062 - 17225177
Alignment:
Q  122 aatggatcaaattataatgaagacaattgttgctattgtattgatt-tgaacaatgaatccaactcccagtgtataaactaaggaggaat-acaaccaat 219  Q
    ||||||||||||| |||   ||| |||||||||||||||||||| | |||||||| ||| |||||||||||||||||||||||||||||| |||||||||    
T  17225062 aatggatcaaattgtaaccgagataattgttgctattgtattgaatatgaacaatcaattcaactcccagtgtataaactaaggaggaataacaaccaat 17225161  T
Q  220 tagcaagtaaaataac 235  Q
    | ||||||||||||||    
T  17225162 ttgcaagtaaaataac 17225177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 52 - 101
Target Start/End: Original strand, 22422736 - 22422785
Alignment:
Q  52 agggtgtgtttggtttggaagagaagttgtgaagaaagaaataggtgaga 101  Q
    |||||||||||||||||||||| |||||||||||| ||||||||||||||    
T  22422736 agggtgtgtttggtttggaagaaaagttgtgaagagagaaataggtgaga 22422785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 48 - 97
Target Start/End: Original strand, 34411318 - 34411367
Alignment:
Q  48 ttttagggtgtgtttggtttggaagagaagttgtgaagaaagaaataggt 97  Q
    |||||||||||||||||| |||||||||||||||||||| ||||||||||    
T  34411318 ttttagggtgtgtttggtatggaagagaagttgtgaagagagaaataggt 34411367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 335 - 399
Target Start/End: Original strand, 40225492 - 40225556
Alignment:
Q  335 cttatttccttgacttttcttatatttataagggtccatattcctattttctataatgtcccttc 399  Q
    |||||||||||| ||||||| |||||||| ||||||||||||||||||| | |||||| ||||||    
T  40225492 cttatttccttggcttttctcatatttattagggtccatattcctatttcccataatgccccttc 40225556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 50 - 101
Target Start/End: Complemental strand, 39843685 - 39843634
Alignment:
Q  50 ttagggtgtgtttggtttggaagagaagttgtgaagaaagaaataggtgaga 101  Q
    ||||||||||||||||||||||||||||||||| ||| | ||||||||||||    
T  39843685 ttagggtgtgtttggtttggaagagaagttgtggagagataaataggtgaga 39843634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 50 - 101
Target Start/End: Original strand, 41326542 - 41326593
Alignment:
Q  50 ttagggtgtgtttggtttggaagagaagttgtgaagaaagaaataggtgaga 101  Q
    |||||||||||||||||| |||||||||||||||||| ||||||| ||||||    
T  41326542 ttagggtgtgtttggtttagaagagaagttgtgaagagagaaataagtgaga 41326593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 58 - 101
Target Start/End: Original strand, 56051164 - 56051207
Alignment:
Q  58 tgtttggtttggaagagaagttgtgaagaaagaaataggtgaga 101  Q
    ||||||||||||||||||||||||||||| ||||||||||||||    
T  56051164 tgtttggtttggaagagaagttgtgaagagagaaataggtgaga 56051207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 48 - 94
Target Start/End: Original strand, 53062065 - 53062111
Alignment:
Q  48 ttttagggtgtgtttggtttggaagagaagttgtgaagaaagaaata 94  Q
    |||||||||||||||||||| |||||||||||||||||| |||||||    
T  53062065 ttttagggtgtgtttggtttagaagagaagttgtgaagagagaaata 53062111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 48 - 101
Target Start/End: Complemental strand, 470224 - 470171
Alignment:
Q  48 ttttagggtgtgtttggtttggaagagaagttgtgaagaaagaaataggtgaga 101  Q
    ||||||| ||||||||||||| ||||||||||||||||| ||||||| ||||||    
T  470224 ttttaggatgtgtttggtttgaaagagaagttgtgaagagagaaatacgtgaga 470171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 48 - 97
Target Start/End: Complemental strand, 25052394 - 25052346
Alignment:
Q  48 ttttagggtgtgtttggtttggaagagaagttgtgaagaaagaaataggt 97  Q
    ||||||||||||||||||| ||||||||||||||||||| ||||||||||    
T  25052394 ttttagggtgtgtttggtt-ggaagagaagttgtgaagagagaaataggt 25052346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 321 - 371
Target Start/End: Original strand, 5373891 - 5373941
Alignment:
Q  321 acacatattccatgcttatttccttgacttttcttatatttataagggtcc 371  Q
    |||||| || ||||||||||||||||||||||||  |||||||||||||||    
T  5373891 acacatttttcatgcttatttccttgacttttctcttatttataagggtcc 5373941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 52 - 101
Target Start/End: Original strand, 42857520 - 42857569
Alignment:
Q  52 agggtgtgtttggtttggaagagaagttgtgaagaaagaaataggtgaga 101  Q
    |||||||||||||||  || ||||||||||||||| ||||||||||||||    
T  42857520 agggtgtgtttggttaagaggagaagttgtgaagagagaaataggtgaga 42857569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 56 - 101
Target Start/End: Original strand, 44937019 - 44937064
Alignment:
Q  56 tgtgtttggtttggaagagaagttgtgaagaaagaaataggtgaga 101  Q
    |||||||||||| |||||||||||||||||| ||||||| ||||||    
T  44937019 tgtgtttggtttagaagagaagttgtgaagagagaaataagtgaga 44937064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 52 - 101
Target Start/End: Complemental strand, 56052779 - 56052730
Alignment:
Q  52 agggtgtgtttggtttggaagagaagttgtgaagaaagaaataggtgaga 101  Q
    |||||||||||||||  |||||||| ||||||||| ||||||||||||||    
T  56052779 agggtgtgtttggttatgaagagaaattgtgaagagagaaataggtgaga 56052730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 49 - 97
Target Start/End: Complemental strand, 11671958 - 11671910
Alignment:
Q  49 tttagggtgtgtttggtttggaagagaagttgtgaagaaagaaataggt 97  Q
    |||| |||||||||||||  |||||||||||||||||| ||||||||||    
T  11671958 tttatggtgtgtttggttaagaagagaagttgtgaagagagaaataggt 11671910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 54 - 97
Target Start/End: Complemental strand, 34413110 - 34413067
Alignment:
Q  54 ggtgtgtttggtttggaagagaagttgtgaagaaagaaataggt 97  Q
    |||||||||||||  |||||||||||||||||| ||||||||||    
T  34413110 ggtgtgtttggttaagaagagaagttgtgaagagagaaataggt 34413067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 58 - 101
Target Start/End: Complemental strand, 40547760 - 40547717
Alignment:
Q  58 tgtttggtttggaagagaagttgtgaagaaagaaataggtgaga 101  Q
    |||||||||  |||||||||||||||||| ||||||||||||||    
T  40547760 tgtttggttgtgaagagaagttgtgaagagagaaataggtgaga 40547717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 52 - 86
Target Start/End: Original strand, 8718616 - 8718650
Alignment:
Q  52 agggtgtgtttggtttggaagagaagttgtgaaga 86  Q
    ||||||||||||||| |||||||||||||||||||    
T  8718616 agggtgtgtttggttcggaagagaagttgtgaaga 8718650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 51 - 97
Target Start/End: Original strand, 50381858 - 50381904
Alignment:
Q  51 tagggtgtgtttggtttggaagagaagttgtgaagaaagaaataggt 97  Q
    |||||||||||||||||  ||||||||||||||||| | ||||||||    
T  50381858 tagggtgtgtttggtttataagagaagttgtgaagagaaaaataggt 50381904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 101
Target Start/End: Original strand, 28440459 - 28440508
Alignment:
Q  52 agggtgtgtttggtttggaagagaagttgtgaagaaagaaataggtgaga 101  Q
    ||||||||||||||||  ||||||| ||||||||| ||||||| ||||||    
T  28440459 agggtgtgtttggtttacaagagaaattgtgaagagagaaataagtgaga 28440508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 86
Target Start/End: Complemental strand, 35106313 - 35106276
Alignment:
Q  49 tttagggtgtgtttggtttggaagagaagttgtgaaga 86  Q
    ||||||||||||||||||| | ||||||||||||||||    
T  35106313 tttagggtgtgtttggtttaggagagaagttgtgaaga 35106276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 101
Target Start/End: Original strand, 55724380 - 55724425
Alignment:
Q  56 tgtgtttggtttggaagagaagttgtgaagaaagaaataggtgaga 101  Q
    ||||||||||||  |||||||||| |||||| ||||||||||||||    
T  55724380 tgtgtttggtttacaagagaagttatgaagagagaaataggtgaga 55724425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 49 - 101
Target Start/End: Complemental strand, 31914025 - 31913973
Alignment:
Q  49 tttagggtgtgtttggtttggaagagaagttgtgaagaaagaaataggtgaga 101  Q
    ||||||||||||||||||  ||  |||||||| ||||| ||||||||||||||    
T  31914025 tttagggtgtgtttggttgtgagaagaagttgagaagagagaaataggtgaga 31913973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 54 - 94
Target Start/End: Original strand, 33633069 - 33633109
Alignment:
Q  54 ggtgtgtttggtttggaagagaagttgtgaagaaagaaata 94  Q
    |||||||||||||| |||||||||||| ||||| |||||||    
T  33633069 ggtgtgtttggtttagaagagaagttgggaagagagaaata 33633109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 50 - 94
Target Start/End: Complemental strand, 44022794 - 44022750
Alignment:
Q  50 ttagggtgtgtttggtttggaagagaagttgtgaagaaagaaata 94  Q
    |||||||||||||||||  |||||||| ||||||||| |||||||    
T  44022794 ttagggtgtgtttggttgtgaagagaaattgtgaagagagaaata 44022750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 50 - 94
Target Start/End: Complemental strand, 47085939 - 47085895
Alignment:
Q  50 ttagggtgtgtttggtttggaagagaagttgtgaagaaagaaata 94  Q
    ||||| |||||||||||  |||||||||||||||||| |||||||    
T  47085939 ttaggatgtgtttggttaagaagagaagttgtgaagagagaaata 47085895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 59; Significance: 7e-25; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 122 - 211
Target Start/End: Complemental strand, 6142143 - 6142053
Alignment:
Q  122 aatggatcaaattataatgaagacaattgttgctattgtattgatt-tgaacaatgaatccaactcccagtgtataaactaaggaggaata 211  Q
    |||||||||||||||||| ||||||||||||||||||| | ||| | ||||| |||||||||||||||||||||||||| |||||||||||    
T  6142143 aatggatcaaattataataaagacaattgttgctattgcactgaatatgaacgatgaatccaactcccagtgtataaacaaaggaggaata 6142053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 49 - 101
Target Start/End: Complemental strand, 2116654 - 2116602
Alignment:
Q  49 tttagggtgtgtttggtttggaagagaagttgtgaagaaagaaataggtgaga 101  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  2116654 tttagggtgtgtttggtttggaagagaagttgtgaagagagaaataggtgaga 2116602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 48 - 101
Target Start/End: Complemental strand, 12845720 - 12845667
Alignment:
Q  48 ttttagggtgtgtttggtttggaagagaagttgtgaagaaagaaataggtgaga 101  Q
    ||||| |||||||||||| |||||||||||||||||||| ||||||||||||||    
T  12845720 ttttatggtgtgtttggtgtggaagagaagttgtgaagagagaaataggtgaga 12845667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 49 - 101
Target Start/End: Original strand, 44061182 - 44061234
Alignment:
Q  49 tttagggtgtgtttggtttggaagagaagttgtgaagaaagaaataggtgaga 101  Q
    |||| ||||||||||||||||||||||||||||||||| ||||| ||||||||    
T  44061182 tttatggtgtgtttggtttggaagagaagttgtgaagagagaaagaggtgaga 44061234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 52 - 101
Target Start/End: Complemental strand, 33099738 - 33099689
Alignment:
Q  52 agggtgtgtttggtttggaagagaagttgtgaagaaagaaataggtgaga 101  Q
    |||||||||||||||| |||||||||||||||||| ||||||| ||||||    
T  33099738 agggtgtgtttggtttagaagagaagttgtgaagagagaaataagtgaga 33099689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 48 - 97
Target Start/End: Original strand, 43325446 - 43325495
Alignment:
Q  48 ttttagggtgtgtttggtttggaagagaagttgtgaagaaagaaataggt 97  Q
    |||||||||||||||||||| |||||||||||||||||| |||| |||||    
T  43325446 ttttagggtgtgtttggtttagaagagaagttgtgaagagagaagtaggt 43325495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 54 - 94
Target Start/End: Original strand, 3547236 - 3547276
Alignment:
Q  54 ggtgtgtttggtttggaagagaagttgtgaagaaagaaata 94  Q
    ||||||||||||||||||||||||||||||||| |||||||    
T  3547236 ggtgtgtttggtttggaagagaagttgtgaagagagaaata 3547276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 50 - 101
Target Start/End: Original strand, 31666158 - 31666209
Alignment:
Q  50 ttagggtgtgtttggtttggaagagaagttgtgaagaaagaaataggtgaga 101  Q
    |||||||||||||||||||||||||||| ||| |||| ||||||| ||||||    
T  31666158 ttagggtgtgtttggtttggaagagaagatgtcaagagagaaatatgtgaga 31666209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 52 - 101
Target Start/End: Original strand, 9200237 - 9200286
Alignment:
Q  52 agggtgtgtttggtttggaagagaagttgtgaagaaagaaataggtgaga 101  Q
    |||||||||| ||||| |||||||||||||||||| ||||||| ||||||    
T  9200237 agggtgtgttaggtttagaagagaagttgtgaagagagaaataagtgaga 9200286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 55 - 94
Target Start/End: Complemental strand, 9579434 - 9579395
Alignment:
Q  55 gtgtgtttggtttggaagagaagttgtgaagaaagaaata 94  Q
    ||||||||||||| |||||||||||||||||| |||||||    
T  9579434 gtgtgtttggtttagaagagaagttgtgaagagagaaata 9579395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 58 - 101
Target Start/End: Complemental strand, 13637251 - 13637208
Alignment:
Q  58 tgtttggtttggaagagaagttgtgaagaaagaaataggtgaga 101  Q
    |||||||||  |||||||||||||||||| ||||||||||||||    
T  13637251 tgtttggttgtgaagagaagttgtgaagagagaaataggtgaga 13637208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 58 - 101
Target Start/End: Complemental strand, 13737664 - 13737621
Alignment:
Q  58 tgtttggtttggaagagaagttgtgaagaaagaaataggtgaga 101  Q
    |||||||||  |||||||||||||||||| ||||||||||||||    
T  13737664 tgtttggttgtgaagagaagttgtgaagagagaaataggtgaga 13737621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 58 - 101
Target Start/End: Original strand, 19438970 - 19439013
Alignment:
Q  58 tgtttggtttggaagagaagttgtgaagaaagaaataggtgaga 101  Q
    |||||||||  |||||||||||||||||| ||||||||||||||    
T  19438970 tgtttggttgtgaagagaagttgtgaagagagaaataggtgaga 19439013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 58 - 101
Target Start/End: Original strand, 19575119 - 19575162
Alignment:
Q  58 tgtttggtttggaagagaagttgtgaagaaagaaataggtgaga 101  Q
    |||||||||  |||||||||||||||||| ||||||||||||||    
T  19575119 tgtttggttgtgaagagaagttgtgaagagagaaataggtgaga 19575162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 50 - 97
Target Start/End: Original strand, 33449449 - 33449496
Alignment:
Q  50 ttagggtgtgtttggtttggaagagaagttgtgaagaaagaaataggt 97  Q
    |||| ||||||||||||||||||| ||||| |||||| ||||||||||    
T  33449449 ttagtgtgtgtttggtttggaagataagttatgaagagagaaataggt 33449496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 58 - 101
Target Start/End: Complemental strand, 34649743 - 34649700
Alignment:
Q  58 tgtttggtttggaagagaagttgtgaagaaagaaataggtgaga 101  Q
    ||||||||||| |||||||||||| |||| ||||||||||||||    
T  34649743 tgtttggtttgaaagagaagttgtaaagagagaaataggtgaga 34649700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 52 - 94
Target Start/End: Original strand, 13884858 - 13884900
Alignment:
Q  52 agggtgtgtttggtttggaagagaagttgtgaagaaagaaata 94  Q
    ||||||||||||||||||| |||||||| |||||| |||||||    
T  13884858 agggtgtgtttggtttggaggagaagttatgaagagagaaata 13884900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 97
Target Start/End: Complemental strand, 26748093 - 26748048
Alignment:
Q  52 agggtgtgtttggtttggaagagaagttgtgaagaaagaaataggt 97  Q
    ||||||||||||||| |||||||||||||  |||| ||||||||||    
T  26748093 agggtgtgtttggttcggaagagaagttgaaaagagagaaataggt 26748048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 97
Target Start/End: Original strand, 33968843 - 33968884
Alignment:
Q  56 tgtgtttggtttggaagagaagttgtgaagaaagaaataggt 97  Q
    ||||||||||||||||||||||||| ||||| |||| |||||    
T  33968843 tgtgtttggtttggaagagaagttgagaagagagaattaggt 33968884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 49 - 101
Target Start/End: Original strand, 2822308 - 2822360
Alignment:
Q  49 tttagggtgtgtttggtttggaagagaagttgtgaagaaagaaataggtgaga 101  Q
    |||| ||||||||||||||   ||||||||| |||||| ||||||||||||||    
T  2822308 tttatggtgtgtttggttttagagagaagttctgaagagagaaataggtgaga 2822360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 47 - 95
Target Start/End: Original strand, 25563083 - 25563131
Alignment:
Q  47 tttttagggtgtgtttggtttggaagagaagttgtgaagaaagaaatag 95  Q
    |||||| | ||||||| |||| |||||||||||||||||| ||||||||    
T  25563083 tttttaagttgtgttttgtttagaagagaagttgtgaagagagaaatag 25563131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 7e-25; HSPs: 29)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 122 - 235
Target Start/End: Complemental strand, 47762345 - 47762231
Alignment:
Q  122 aatggatcaaattataatgaagacaattgttgctattgtattgatttgaacaatgaatccaactcccagtgtataaactaaggaggaat-acaaccaatt 220  Q
    ||||||||||||| |||   ||| |||||||||||||||||| ||||||||||| ||| ||||||||| |||||||||||||||| ||| ||||||| ||    
T  47762345 aatggatcaaattgtaaaagagataattgttgctattgtattaatttgaacaatcaattcaactcccaatgtataaactaaggagaaataacaaccattt 47762246  T
Q  221 agcaagtaaaataac 235  Q
     ||||||||||||||    
T  47762245 tgcaagtaaaataac 47762231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 335 - 399
Target Start/End: Complemental strand, 47762137 - 47762073
Alignment:
Q  335 cttatttccttgacttttcttatatttataagggtccatattcctattttctataatgtcccttc 399  Q
    |||||||||||| ||||||| |||||||||||||||||||||||||||||| |||||| ||||||    
T  47762137 cttatttccttggcttttctcatatttataagggtccatattcctattttccataatgccccttc 47762073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 52 - 102
Target Start/End: Complemental strand, 45657829 - 45657779
Alignment:
Q  52 agggtgtgtttggtttggaagagaagttgtgaagaaagaaataggtgagaa 102  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  45657829 agggtgtgtttggtttggaagagaagttgtgaagagagaaataggtgagaa 45657779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 171 - 230
Target Start/End: Original strand, 20290530 - 20290590
Alignment:
Q  171 acaatgaatccaactcccagtgtataaactaaggaggaat-acaaccaattagcaagtaaa 230  Q
    ||||| |||||||||||||||||||||||||||||||||| |||||||||| |||||||||    
T  20290530 acaatcaatccaactcccagtgtataaactaaggaggaataacaaccaatttgcaagtaaa 20290590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 54 - 101
Target Start/End: Complemental strand, 11315574 - 11315527
Alignment:
Q  54 ggtgtgtttggtttggaagagaagttgtgaagaaagaaataggtgaga 101  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||    
T  11315574 ggtgtgtttggtttggaagagaagttgtgaagagagaaataggtgaga 11315527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 52 - 101
Target Start/End: Original strand, 48402504 - 48402553
Alignment:
Q  52 agggtgtgtttggtttggaagagaagttgtgaagaaagaaataggtgaga 101  Q
    ||||||||||||||| ||||||||||||||||||| ||||||||||||||    
T  48402504 agggtgtgtttggttaggaagagaagttgtgaagagagaaataggtgaga 48402553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 50 - 97
Target Start/End: Complemental strand, 41204035 - 41203988
Alignment:
Q  50 ttagggtgtgtttggtttggaagagaagttgtgaagaaagaaataggt 97  Q
    ||||||||||| ||||||||||||||||||||||||| ||||||||||    
T  41204035 ttagggtgtgtgtggtttggaagagaagttgtgaagagagaaataggt 41203988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 52 - 101
Target Start/End: Complemental strand, 34996885 - 34996836
Alignment:
Q  52 agggtgtgtttggtttggaagagaagttgtgaagaaagaaataggtgaga 101  Q
    |||||||||||||| | |||||||||||||||||| ||||||||||||||    
T  34996885 agggtgtgtttggtatagaagagaagttgtgaagagagaaataggtgaga 34996836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 50 - 94
Target Start/End: Complemental strand, 20383978 - 20383934
Alignment:
Q  50 ttagggtgtgtttggtttggaagagaagttgtgaagaaagaaata 94  Q
    |||||||||||||||||| |||||||||||||||||| |||||||    
T  20383978 ttagggtgtgtttggtttagaagagaagttgtgaagagagaaata 20383934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 58 - 97
Target Start/End: Complemental strand, 3563159 - 3563120
Alignment:
Q  58 tgtttggtttggaagagaagttgtgaagaaagaaataggt 97  Q
    ||||||||||||||||||||||||||||| ||||||||||    
T  3563159 tgtttggtttggaagagaagttgtgaagagagaaataggt 3563120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 58 - 101
Target Start/End: Original strand, 37545394 - 37545437
Alignment:
Q  58 tgtttggtttggaagagaagttgtgaagaaagaaataggtgaga 101  Q
    ||||||||||||||||||| ||||||||| ||||||||||||||    
T  37545394 tgtttggtttggaagagaaattgtgaagagagaaataggtgaga 37545437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 54 - 101
Target Start/End: Complemental strand, 40786456 - 40786409
Alignment:
Q  54 ggtgtgtttggtttggaagagaagttgtgaagaaagaaataggtgaga 101  Q
    |||||||||||||| |||||||||||||||||| ||||||| ||||||    
T  40786456 ggtgtgtttggtttagaagagaagttgtgaagagagaaatacgtgaga 40786409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 52 - 97
Target Start/End: Complemental strand, 10048326 - 10048281
Alignment:
Q  52 agggtgtgtttggtttggaagagaagttgtgaagaaagaaataggt 97  Q
    ||||||||||||||||  ||||||||||||||||| ||||||||||    
T  10048326 agggtgtgtttggtttaaaagagaagttgtgaagagagaaataggt 10048281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 49 - 94
Target Start/End: Original strand, 33614078 - 33614123
Alignment:
Q  49 tttagggtgtgtttggtttggaagagaagttgtgaagaaagaaata 94  Q
    |||||||||||||||||||  ||||||||||||||||| |||||||    
T  33614078 tttagggtgtgtttggtttaaaagagaagttgtgaagagagaaata 33614123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 44 - 101
Target Start/End: Original strand, 35395997 - 35396054
Alignment:
Q  44 taatttttagggtgtgtttggtttggaagagaagttgtgaagaaagaaataggtgaga 101  Q
    |||| ||||||||||||||||||  |||||||| |||| |||| ||||||||||||||    
T  35395997 taatatttagggtgtgtttggttatgaagagaaattgtaaagagagaaataggtgaga 35396054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 49 - 86
Target Start/End: Complemental strand, 38369918 - 38369881
Alignment:
Q  49 tttagggtgtgtttggtttggaagagaagttgtgaaga 86  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  38369918 tttagggtgtgtttggtttgggagagaagttgtgaaga 38369881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 52 - 97
Target Start/End: Original strand, 41816531 - 41816576
Alignment:
Q  52 agggtgtgtttggtttggaagagaagttgtgaagaaagaaataggt 97  Q
    ||||||||||||||||  ||||||||||||||||| ||||||||||    
T  41816531 agggtgtgtttggtttaaaagagaagttgtgaagagagaaataggt 41816576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 52 - 101
Target Start/End: Complemental strand, 44063041 - 44062992
Alignment:
Q  52 agggtgtgtttggtttggaagagaagttgtgaagaaagaaataggtgaga 101  Q
    |||||||||||||||| |||||||| ||||||||| | ||||||||||||    
T  44063041 agggtgtgtttggtttagaagagaaattgtgaagagaaaaataggtgaga 44062992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 48 - 97
Target Start/End: Original strand, 46290417 - 46290466
Alignment:
Q  48 ttttagggtgtgtttggtttggaagagaagttgtgaagaaagaaataggt 97  Q
    ||||||||| |||||||| | |||||||||||||||||| ||||||||||    
T  46290417 ttttagggtctgtttggtgtagaagagaagttgtgaagagagaaataggt 46290466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 58 - 102
Target Start/End: Original strand, 38319732 - 38319776
Alignment:
Q  58 tgtttggtttggaagagaagttgtgaagaaagaaataggtgagaa 102  Q
    ||||||||||||||||||||| ||||||||||||| ||| |||||    
T  38319732 tgtttggtttggaagagaagtcgtgaagaaagaaaaaggcgagaa 38319776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 54 - 101
Target Start/End: Complemental strand, 19822958 - 19822911
Alignment:
Q  54 ggtgtgtttggtttggaagagaagttgtgaagaaagaaataggtgaga 101  Q
    |||||||||||||| |||  ||| ||||||||||||||||||||||||    
T  19822958 ggtgtgtttggtttagaaaggaaattgtgaagaaagaaataggtgaga 19822911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 58 - 101
Target Start/End: Complemental strand, 27542845 - 27542802
Alignment:
Q  58 tgtttggtttggaagagaagttgtgaagaaagaaataggtgaga 101  Q
    |||||||||  |||||||||||||||||| ||||||||||||||    
T  27542845 tgtttggttgtgaagagaagttgtgaagagagaaataggtgaga 27542802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 50 - 97
Target Start/End: Original strand, 37031201 - 37031248
Alignment:
Q  50 ttagggtgtgtttggtttggaagagaagttgtgaagaaagaaataggt 97  Q
    |||||||||||||||| | ||||||||||||| |||| ||||||||||    
T  37031201 ttagggtgtgtttggtgtagaagagaagttgtaaagagagaaataggt 37031248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 97
Target Start/End: Complemental strand, 3633053 - 3633012
Alignment:
Q  56 tgtgtttggtttggaagagaagttgtgaagaaagaaataggt 97  Q
    |||||||||| | |||||||||||||||||| ||||||||||    
T  3633053 tgtgtttggtgtagaagagaagttgtgaagagagaaataggt 3633012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 94
Target Start/End: Original strand, 22643869 - 22643914
Alignment:
Q  49 tttagggtgtgtttggtttggaagagaagttgtgaagaaagaaata 94  Q
    |||||| |||||||||||| ||| |||||||||||||| |||||||    
T  22643869 tttaggatgtgtttggtttagaaaagaagttgtgaagagagaaata 22643914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 97
Target Start/End: Original strand, 49024147 - 49024192
Alignment:
Q  52 agggtgtgtttggtttggaagagaagttgtgaagaaagaaataggt 97  Q
    |||||||||||||||| | ||| |||||||||||| ||||||||||    
T  49024147 agggtgtgtttggtttaggagaaaagttgtgaagagagaaataggt 49024192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 69 - 101
Target Start/End: Original strand, 18534202 - 18534234
Alignment:
Q  69 gaagagaagttgtgaagaaagaaataggtgaga 101  Q
    |||||||||||||||||| ||||||||||||||    
T  18534202 gaagagaagttgtgaagagagaaataggtgaga 18534234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 49 - 101
Target Start/End: Complemental strand, 23097421 - 23097369
Alignment:
Q  49 tttagggtgtgtttggtttggaagagaagttgtgaagaaagaaataggtgaga 101  Q
    |||| |||||||||| |||| ||| ||||||||||| | ||||||||||||||    
T  23097421 tttatggtgtgtttgatttgaaagggaagttgtgaatagagaaataggtgaga 23097369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 54 - 86
Target Start/End: Original strand, 45331014 - 45331046
Alignment:
Q  54 ggtgtgtttggtttggaagagaagttgtgaaga 86  Q
    |||||||||| ||||||||||||||||||||||    
T  45331014 ggtgtgtttgatttggaagagaagttgtgaaga 45331046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 2e-22; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 321 - 399
Target Start/End: Complemental strand, 10548270 - 10548192
Alignment:
Q  321 acacatattccatgcttatttccttgacttttcttatatttataagggtccatattcctattttctataatgtcccttc 399  Q
    ||||||||||||| |||||||||||| ||||||| |||||||||| ||||||||||||||||||| |||||| ||||||    
T  10548270 acacatattccatacttatttccttggcttttctcatatttataaaggtccatattcctattttccataatgccccttc 10548192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 52 - 101
Target Start/End: Complemental strand, 11447367 - 11447318
Alignment:
Q  52 agggtgtgtttggtttggaagagaagttgtgaagaaagaaataggtgaga 101  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  11447367 agggtgtgtttggtttggaagagaagttgtgaagagagaaataggtgaga 11447318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 53 - 101
Target Start/End: Complemental strand, 1157119 - 1157071
Alignment:
Q  53 gggtgtgtttggtttggaagagaagttgtgaagaaagaaataggtgaga 101  Q
    ||||||||||||||| |||||||||||||||||| ||||||||||||||    
T  1157119 gggtgtgtttggtttagaagagaagttgtgaagagagaaataggtgaga 1157071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 49 - 101
Target Start/End: Complemental strand, 17888423 - 17888371
Alignment:
Q  49 tttagggtgtgtttggtttggaagagaagttgtgaagaaagaaataggtgaga 101  Q
    ||||||||||||||||||| |||||||| ||||||||| ||||||||||||||    
T  17888423 tttagggtgtgtttggtttagaagagaaattgtgaagagagaaataggtgaga 17888371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 50 - 101
Target Start/End: Original strand, 27878593 - 27878644
Alignment:
Q  50 ttagggtgtgtttggtttggaagagaagttgtgaagaaagaaataggtgaga 101  Q
    ||||||||||||||||||||||||||| ||||||||| ||||| ||||||||    
T  27878593 ttagggtgtgtttggtttggaagagaaattgtgaagagagaaagaggtgaga 27878644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 52 - 101
Target Start/End: Complemental strand, 8205962 - 8205913
Alignment:
Q  52 agggtgtgtttggtttggaagagaagttgtgaagaaagaaataggtgaga 101  Q
    |||||||||||||||||| ||| |||||||||||| ||||||||||||||    
T  8205962 agggtgtgtttggtttgggagaaaagttgtgaagagagaaataggtgaga 8205913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 52 - 101
Target Start/End: Complemental strand, 26647879 - 26647830
Alignment:
Q  52 agggtgtgtttggtttggaagagaagttgtgaagaaagaaataggtgaga 101  Q
    ||||||||||||||||||||||||||||||||| | || |||||||||||    
T  26647879 agggtgtgtttggtttggaagagaagttgtgaaaagagcaataggtgaga 26647830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 52 - 101
Target Start/End: Complemental strand, 26919464 - 26919415
Alignment:
Q  52 agggtgtgtttggtttggaagagaagttgtgaagaaagaaataggtgaga 101  Q
    ||||||||||||||||||||||||||||||||| | || |||||||||||    
T  26919464 agggtgtgtttggtttggaagagaagttgtgaaaagagcaataggtgaga 26919415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 49 - 97
Target Start/End: Original strand, 38503508 - 38503556
Alignment:
Q  49 tttagggtgtgtttggtttggaagagaagttgtgaagaaagaaataggt 97  Q
    |||||||||||||||||||||||||||||||| ||||| |||| |||||    
T  38503508 tttagggtgtgtttggtttggaagagaagttgagaagagagaagtaggt 38503556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 46 - 97
Target Start/End: Complemental strand, 10830418 - 10830367
Alignment:
Q  46 atttttagggtgtgtttggtttggaagagaagttgtgaagaaagaaataggt 97  Q
    ||||||||||||||||||| ||||||||||| | || |||||||||||||||    
T  10830418 atttttagggtgtgtttggattggaagagaaatagtaaagaaagaaataggt 10830367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 51 - 97
Target Start/End: Original strand, 9780160 - 9780206
Alignment:
Q  51 tagggtgtgtttggtttggaagagaagttgtgaagaaagaaataggt 97  Q
    |||||||||||||||||  ||||||||||||||||| ||||||||||    
T  9780160 tagggtgtgtttggtttataagagaagttgtgaagatagaaataggt 9780206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 321 - 371
Target Start/End: Original strand, 20319537 - 20319587
Alignment:
Q  321 acacatattccatgcttatttccttgacttttcttatatttataagggtcc 371  Q
    ||||||||| |||||||||||||| |||||||||  |||||||||||||||    
T  20319537 acacatatttcatgcttatttcctggacttttctcttatttataagggtcc 20319587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 49 - 102
Target Start/End: Complemental strand, 37226169 - 37226116
Alignment:
Q  49 tttagggtgtgtttggtttggaagagaagttgtgaagaaagaaataggtgagaa 102  Q
    |||||||||||||||||||||||||||| ||| ||||| ||||| |||| ||||    
T  37226169 tttagggtgtgtttggtttggaagagaatttgcgaagagagaaacaggtaagaa 37226116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 52 - 96
Target Start/End: Original strand, 233417 - 233461
Alignment:
Q  52 agggtgtgtttggtttggaagagaagttgtgaagaaagaaatagg 96  Q
    ||||| |||||||||| |||||||||||||||||| |||||||||    
T  233417 agggtatgtttggtttagaagagaagttgtgaagagagaaatagg 233461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 49 - 97
Target Start/End: Original strand, 29801652 - 29801700
Alignment:
Q  49 tttagggtgtgtttggtttggaagagaagttgtgaagaaagaaataggt 97  Q
    ||||||||||||||||||||||||| |||||| ||||| |||| |||||    
T  29801652 tttagggtgtgtttggtttggaagaaaagttgagaagagagaagtaggt 29801700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 51 - 97
Target Start/End: Original strand, 2683685 - 2683731
Alignment:
Q  51 tagggtgtgtttggtttggaagagaagttgtgaagaaagaaataggt 97  Q
    ||||||||||||||||| ||||||||||| |||||| | ||||||||    
T  2683685 tagggtgtgtttggtttagaagagaagttatgaagagataaataggt 2683731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 52 - 102
Target Start/End: Original strand, 7529670 - 7529720
Alignment:
Q  52 agggtgtgtttggtttggaagagaagttgtgaagaaagaaataggtgagaa 102  Q
    ||||||||||||||| |||||||||||||  |||| |||||||||| ||||    
T  7529670 agggtgtgtttggttcggaagagaagttggaaagagagaaataggtaagaa 7529720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 52 - 94
Target Start/End: Original strand, 19962475 - 19962517
Alignment:
Q  52 agggtgtgtttggtttggaagagaagttgtgaagaaagaaata 94  Q
    |||||||||||||||| ||||||||||| |||||| |||||||    
T  19962475 agggtgtgtttggtttagaagagaagttctgaagagagaaata 19962517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 95
Target Start/End: Original strand, 8223814 - 8223855
Alignment:
Q  54 ggtgtgtttggtttggaagagaagttgtgaagaaagaaatag 95  Q
    |||||||||||||  |||||||||||||||||| ||||||||    
T  8223814 ggtgtgtttggttaagaagagaagttgtgaagagagaaatag 8223855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 93
Target Start/End: Original strand, 39039803 - 39039844
Alignment:
Q  52 agggtgtgtttggtttggaagagaagttgtgaagaaagaaat 93  Q
    |||||||||||||||| ||||||||| |||||||| ||||||    
T  39039803 agggtgtgtttggtttagaagagaagatgtgaagagagaaat 39039844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 4e-20; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 48 - 102
Target Start/End: Original strand, 251793 - 251847
Alignment:
Q  48 ttttagggtgtgtttggtttggaagagaagttgtgaagaaagaaataggtgagaa 102  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  251793 ttttagggtgtgtttggtttggaagagaagttgtgaagagagaaataggtgagaa 251847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 50 - 101
Target Start/End: Original strand, 3711424 - 3711475
Alignment:
Q  50 ttagggtgtgtttggtttggaagagaagttgtgaagaaagaaataggtgaga 101  Q
    ||||||||||||||||||||||||||||||||||||| ||||| ||||||||    
T  3711424 ttagggtgtgtttggtttggaagagaagttgtgaagagagaaagaggtgaga 3711475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 55 - 101
Target Start/End: Complemental strand, 7341355 - 7341309
Alignment:
Q  55 gtgtgtttggtttggaagagaagttgtgaagaaagaaataggtgaga 101  Q
    |||||||||||||||||||||| ||||||||| ||||||||||||||    
T  7341355 gtgtgtttggtttggaagagaaattgtgaagagagaaataggtgaga 7341309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 49 - 102
Target Start/End: Complemental strand, 33504574 - 33504521
Alignment:
Q  49 tttagggtgtgtttggtttggaagagaagttgtgaagaaagaaataggtgagaa 102  Q
    ||||||||||||||||||||  |||||||||||||| | |||||||||||||||    
T  33504574 tttagggtgtgtttggtttgagagagaagttgtgaaaagagaaataggtgagaa 33504521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 58 - 101
Target Start/End: Complemental strand, 13887293 - 13887250
Alignment:
Q  58 tgtttggtttggaagagaagttgtgaagaaagaaataggtgaga 101  Q
    |||||||||  |||||||||||||||||| ||||||||||||||    
T  13887293 tgtttggttgtgaagagaagttgtgaagagagaaataggtgaga 13887250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0072 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: scaffold0072
Description:

Target: scaffold0072; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 49 - 101
Target Start/End: Original strand, 46509 - 46561
Alignment:
Q  49 tttagggtgtgtttggtttggaagagaagttgtgaagaaagaaataggtgaga 101  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  46509 tttagggtgtgtttggtttggaagagaagttgtgaagagagaaataggtgaga 46561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0380 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0380
Description:

Target: scaffold0380; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 50 - 101
Target Start/End: Original strand, 43 - 94
Alignment:
Q  50 ttagggtgtgtttggtttggaagagaagttgtgaagaaagaaataggtgaga 101  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  43 ttagggtgtgtttggtttggaagagaagttgtgaagagagaaataggtgaga 94  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0590 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 321 - 399
Target Start/End: Original strand, 5021 - 5101
Alignment:
Q  321 acacatattccatgcttatttccttgacttttcttatatt--tataagggtccatattcctattttctataatgtcccttc 399  Q
    ||||||||| |||||||||||||||| ||||||| |||||  ||||||||||||||||||||||| | |||||| ||||||    
T  5021 acacatatttcatgcttatttccttggcttttctcatatttatataagggtccatattcctatttcccataatgccccttc 5101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0590; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 323 - 384
Target Start/End: Original strand, 7701 - 7762
Alignment:
Q  323 acatattccatgcttatttccttgacttttcttatatttataagggtccatattcctatttt 384  Q
    ||||||| ||||||||||| ||||| ||||||  ||||||||||||| ||||||||||||||    
T  7701 acatatttcatgcttattttcttgatttttctcgtatttataagggttcatattcctatttt 7762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 6e-16; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 122 - 235
Target Start/End: Complemental strand, 42735555 - 42735440
Alignment:
Q  122 aatggatcaaattataatgaagacaattgttgctattgtattg-atttgaacaatgaatccaactcccagtgtataaactaaggaggaat-acaaccaat 219  Q
    ||||||||||| | |||   ||| ||||||| ||||||||||| || ||||| || ||| |||||||||||||||||||||||||||||| ||| |||||    
T  42735555 aatggatcaaagtgtaacagagataattgtttctattgtattgaatatgaactatcaattcaactcccagtgtataaactaaggaggaataacagccaat 42735456  T
Q  220 tagcaagtaaaataac 235  Q
    | ||||||||| ||||    
T  42735455 ttgcaagtaaactaac 42735440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 52 - 101
Target Start/End: Original strand, 3207207 - 3207256
Alignment:
Q  52 agggtgtgtttggtttggaagagaagttgtgaagaaagaaataggtgaga 101  Q
    ||||| ||||||||||||||||||||||||||||| ||||||||||||||    
T  3207207 agggtatgtttggtttggaagagaagttgtgaagagagaaataggtgaga 3207256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 52 - 101
Target Start/End: Original strand, 27337184 - 27337233
Alignment:
Q  52 agggtgtgtttggtttggaagagaagttgtgaagaaagaaataggtgaga 101  Q
    ||||| ||||||||||||||||||||||||||||| ||||||||||||||    
T  27337184 agggtatgtttggtttggaagagaagttgtgaagagagaaataggtgaga 27337233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 53 - 101
Target Start/End: Original strand, 37472180 - 37472228
Alignment:
Q  53 gggtgtgtttggtttggaagagaagttgtgaagaaagaaataggtgaga 101  Q
    ||||||||||||||||||||| |||||||||||| ||||||||||||||    
T  37472180 gggtgtgtttggtttggaagacaagttgtgaagagagaaataggtgaga 37472228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 54 - 101
Target Start/End: Original strand, 10913453 - 10913500
Alignment:
Q  54 ggtgtgtttggtttggaagagaagttgtgaagaaagaaataggtgaga 101  Q
    |||||||||||| |||||||||||||||||||| ||||||||||||||    
T  10913453 ggtgtgtttggtgtggaagagaagttgtgaagagagaaataggtgaga 10913500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 331 - 399
Target Start/End: Complemental strand, 42735350 - 42735280
Alignment:
Q  331 catgcttatttccttgacttttcttatatttata--agggtccatattcctattttctataatgtcccttc 399  Q
    |||||||||||||||| ||||||| |||||||||  ||||||||||||||||||| | |||||| ||||||    
T  42735350 catgcttatttccttgccttttctcatatttataagagggtccatattcctatttcccataatgccccttc 42735280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 52 - 97
Target Start/End: Complemental strand, 41322106 - 41322061
Alignment:
Q  52 agggtgtgtttggtttggaagagaagttgtgaagaaagaaataggt 97  Q
    |||||||||||||||| |||||||||||||||||| ||||||||||    
T  41322106 agggtgtgtttggtttagaagagaagttgtgaagagagaaataggt 41322061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 49 - 97
Target Start/End: Complemental strand, 38376577 - 38376529
Alignment:
Q  49 tttagggtgtgtttggtttggaagagaagttgtgaagaaagaaataggt 97  Q
    ||||||||||||||||| | |||||||||||||||||| ||||||||||    
T  38376577 tttagggtgtgtttggtgtagaagagaagttgtgaagagagaaataggt 38376529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 49 - 97
Target Start/End: Complemental strand, 42578625 - 42578577
Alignment:
Q  49 tttagggtgtgtttggtttggaagagaagttgtgaagaaagaaataggt 97  Q
    |||||||| |||||||||| |||||||||||||||||| ||||||||||    
T  42578625 tttagggtatgtttggtttagaagagaagttgtgaagagagaaataggt 42578577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 48 - 101
Target Start/End: Complemental strand, 4843513 - 4843460
Alignment:
Q  48 ttttagggtgtgtttggtttggaagagaagttgtgaagaaagaaataggtgaga 101  Q
    |||| ||||||||||||||| |||||||| ||||||||| ||||||| ||||||    
T  4843513 tttttgggtgtgtttggtttagaagagaaattgtgaagagagaaataagtgaga 4843460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 52 - 101
Target Start/End: Original strand, 13070456 - 13070505
Alignment:
Q  52 agggtgtgtttggtttggaagagaagttgtgaagaaagaaataggtgaga 101  Q
    |||||||||||||||  |||||||| ||||||||| ||||||||||||||    
T  13070456 agggtgtgtttggttgtgaagagaaattgtgaagagagaaataggtgaga 13070505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 52 - 101
Target Start/End: Complemental strand, 31570504 - 31570455
Alignment:
Q  52 agggtgtgtttggtttggaagagaagttgtgaagaaagaaataggtgaga 101  Q
    |||||||||||||||| | |||||||| ||||||| ||||||||||||||    
T  31570504 agggtgtgtttggtttaggagagaagtcgtgaagagagaaataggtgaga 31570455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 54 - 101
Target Start/End: Original strand, 2020135 - 2020182
Alignment:
Q  54 ggtgtgtttggtttggaagagaagttgtgaagaaagaaataggtgaga 101  Q
    |||||| ||||||| ||||||||| |||||||| ||||||||||||||    
T  2020135 ggtgtgcttggtttagaagagaagatgtgaagagagaaataggtgaga 2020182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 51 - 101
Target Start/End: Original strand, 33618047 - 33618097
Alignment:
Q  51 tagggtgtgtttggtttggaagagaagttgtgaagaaagaaataggtgaga 101  Q
    |||||||||||  ||||| |||||||||| |||||| ||||||||||||||    
T  33618047 tagggtgtgttcagtttgaaagagaagttctgaagagagaaataggtgaga 33618097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 101
Target Start/End: Complemental strand, 1777396 - 1777347
Alignment:
Q  52 agggtgtgtttggtttggaagagaagttgtgaagaaagaaataggtgaga 101  Q
    ||||||||||||||| ||||||||| || |||||| ||||| ||||||||    
T  1777396 agggtgtgtttggttgggaagagaaattatgaagagagaaagaggtgaga 1777347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 101
Target Start/End: Original strand, 4681478 - 4681527
Alignment:
Q  52 agggtgtgtttggtttggaagagaagttgtgaagaaagaaataggtgaga 101  Q
    ||||||||||||||| ||||||||| || |||||| ||||| ||||||||    
T  4681478 agggtgtgtttggttgggaagagaaattatgaagagagaaagaggtgaga 4681527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 94
Target Start/End: Complemental strand, 9225243 - 9225198
Alignment:
Q  49 tttagggtgtgtttggtttggaagagaagttgtgaagaaagaaata 94  Q
    |||| |||||||||||||| |||||||||||| ||||| |||||||    
T  9225243 tttatggtgtgtttggtttagaagagaagttgggaagagagaaata 9225198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 91
Target Start/End: Original strand, 39640452 - 39640493
Alignment:
Q  50 ttagggtgtgtttggtttggaagagaagttgtgaagaaagaa 91  Q
    ||||||||||||||||||  ||||||||||||||||| ||||    
T  39640452 ttagggtgtgtttggtttaaaagagaagttgtgaagagagaa 39640493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 97
Target Start/End: Original strand, 39676224 - 39676273
Alignment:
Q  48 ttttagggtgtgtttggtttggaagagaagttgtgaagaaagaaataggt 97  Q
    |||||||||||||||||||  ||||||||||||  |||| ||||||||||    
T  39676224 ttttagggtgtgtttggttcagaagagaagttggaaagagagaaataggt 39676273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 61 - 101
Target Start/End: Complemental strand, 13979214 - 13979174
Alignment:
Q  61 ttggtttggaagagaagttgtgaagaaagaaataggtgaga 101  Q
    |||||||||||||||| ||||||||| |||||||| |||||    
T  13979214 ttggtttggaagagaaattgtgaagagagaaatagatgaga 13979174  T

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Target: scaffold0069 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 55 - 101
Target Start/End: Original strand, 35962 - 36008
Alignment:
Q  55 gtgtgtttggtttggaagagaagttgtgaagaaagaaataggtgaga 101  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||    
T  35962 gtgtgtttggtttggaagagaagttgtgaagagagaaataggtgaga 36008  T

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Target: scaffold0459 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0459
Description:

Target: scaffold0459; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 55 - 101
Target Start/End: Original strand, 12341 - 12387
Alignment:
Q  55 gtgtgtttggtttggaagagaagttgtgaagaaagaaataggtgaga 101  Q
    |||||||||||||||||||||| ||||||||| ||||||||||||||    
T  12341 gtgtgtttggtttggaagagaaattgtgaagagagaaataggtgaga 12387  T

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Target: scaffold0366 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: scaffold0366
Description:

Target: scaffold0366; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 55 - 101
Target Start/End: Original strand, 9982 - 10028
Alignment:
Q  55 gtgtgtttggtttggaagagaagttgtgaagaaagaaataggtgaga 101  Q
    |||||||||||||||||||||| ||||||||| ||||||||||||||    
T  9982 gtgtgtttggtttggaagagaaattgtgaagagagaaataggtgaga 10028  T

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Target: scaffold0366; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 55 - 101
Target Start/End: Original strand, 13648 - 13694
Alignment:
Q  55 gtgtgtttggtttggaagagaagttgtgaagaaagaaataggtgaga 101  Q
    |||||||||||||||||||||| ||||||||| ||||||||||||||    
T  13648 gtgtgtttggtttggaagagaaattgtgaagagagaaataggtgaga 13694  T

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Target: scaffold0100 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0100
Description:

Target: scaffold0100; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 53 - 101
Target Start/End: Original strand, 44388 - 44436
Alignment:
Q  53 gggtgtgtttggtttggaagagaagttgtgaagaaagaaataggtgaga 101  Q
    ||||||||||||||| |||| ||||||||||||| ||||||||||||||    
T  44388 gggtgtgtttggtttagaagtgaagttgtgaagagagaaataggtgaga 44436  T

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Target: scaffold0385 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0385
Description:

Target: scaffold0385; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 50 - 97
Target Start/End: Complemental strand, 11950 - 11904
Alignment:
Q  50 ttagggtgtgtttggtttggaagagaagttgtgaagaaagaaataggt 97  Q
    ||||||||||||||||| ||||||||||||||||||| ||||||||||    
T  11950 ttagggtgtgtttggtt-ggaagagaagttgtgaagagagaaataggt 11904  T

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Target: scaffold0031 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 48 - 97
Target Start/End: Original strand, 1480 - 1529
Alignment:
Q  48 ttttagggtgtgtttggtttggaagagaagttgtgaagaaagaaataggt 97  Q
    ||||| |||||||||||||| |||||||||||||||||| | ||||||||    
T  1480 ttttaaggtgtgtttggtttagaagagaagttgtgaagagataaataggt 1529  T

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Target: scaffold0060 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 51 - 97
Target Start/End: Complemental strand, 67955 - 67909
Alignment:
Q  51 tagggtgtgtttggtttggaagagaagttgtgaagaaagaaataggt 97  Q
    |||||||||||||||| |||||||||||||  |||| ||||||||||    
T  67955 tagggtgtgtttggttcggaagagaagttggaaagagagaaataggt 67909  T

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Target: scaffold0287 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0287
Description:

Target: scaffold0287; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 97
Target Start/End: Original strand, 13032 - 13073
Alignment:
Q  56 tgtgtttggtttggaagagaagttgtgaagaaagaaataggt 97  Q
    |||||||||| | |||||||||||||||||| ||||||||||    
T  13032 tgtgtttggtgtagaagagaagttgtgaagagagaaataggt 13073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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