View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10319_low_17 (Length: 389)
Name: NF10319_low_17
Description: NF10319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10319_low_17 |
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| [»] scaffold0350 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 121 - 382
Target Start/End: Original strand, 46887367 - 46887629
Alignment:
| Q |
121 |
agtgatgaagtgaaggaacatttgagtaacgagatcacgaaggagttgtttaggtttagcttctttt-tgatggagaggatatcggagatgattgattca |
219 |
Q |
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| T |
46887367 |
agtgatgaagtgaaggaacatttgagtaacgagatcacgaaggagttgtttaggtttagcttcttttttgatggagaggatatcggagatgattgattca |
46887466 |
T |
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| Q |
220 |
atggaagatttactgttttgaagcaattcgtagggtgattcttcgtccgatttggaatcttctgaggaattgggaaaggcttgttcgttttgttcttcca |
319 |
Q |
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| T |
46887467 |
atggaagatttactgttttgaagcaattcgtagggtgattcttcgtccgatttggaatcttctgaggaattgggaaaggcttgttcgttttgttcttcca |
46887566 |
T |
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| Q |
320 |
tggcgattgaaccttcttctatctcaccgtcttccattttctctgttcttttgttctctgctt |
382 |
Q |
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| T |
46887567 |
tggcgattgaaccttcttctatctcaccgtcttccattttttctgttcttttgttctcagctt |
46887629 |
T |
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Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 74 - 120
Target Start/End: Complemental strand, 21136806 - 21136760
Alignment:
| Q |
74 |
ttaaacttcattacactctcttcccctccaataaaatatctcccctc |
120 |
Q |
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| T |
21136806 |
ttaaacttcattacactctcttcccctccaataaaatatctcccctc |
21136760 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0350 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0350
Description:
Target: scaffold0350; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 68
Target Start/End: Complemental strand, 1318 - 1278
Alignment:
| Q |
29 |
tggtggccggagtttgaactcca-accttatatatattatg |
68 |
Q |
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| T |
1318 |
tggtggccggagtttgaactccagaccttacatatattatg |
1278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 68
Target Start/End: Original strand, 6038266 - 6038306
Alignment:
| Q |
29 |
tggtggccggagtttgaactcca-accttatatatattatg |
68 |
Q |
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| T |
6038266 |
tggtggccggagtttgaactccagaccttacatatattatg |
6038306 |
T |
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