View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10319_low_2 (Length: 733)
Name: NF10319_low_2
Description: NF10319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10319_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 301; Significance: 1e-169; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 238 - 578
Target Start/End: Original strand, 36378790 - 36379133
Alignment:
| Q |
238 |
tgttatttctttcttgttaaaactcagggtcttctttctatcttccacttcctttttggttcggaaatatgaaattgaattgaattaaagaataagatgg |
337 |
Q |
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| T |
36378790 |
tgttatttctttcttgttaaaactcagggtcttctttctatcttcaatttcctttttggttcggaaatatgaaattgaattgaattaaagaataagatgg |
36378889 |
T |
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| Q |
338 |
gaataaatttcacaattacgaattgtctatttctatcacctcttcatctttatttcaacccaaaagttcaatatttcatttcattcgtggctccacttct |
437 |
Q |
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| T |
36378890 |
gaataaatttcacaattacgaattgtctatttctatcaactctttatctttatttcaacccaaaagttcaatatttcatttcattcgtggctccacatct |
36378989 |
T |
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| Q |
438 |
ctgtgtttggtaaaggtagaagaagtcctcttaatttataactc--taacaattatttttacttgtgaactagtcgatgtgggctc-tatgatttgtata |
534 |
Q |
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| T |
36378990 |
ctgtgtttggtaaaggtagaataagtcctcttaatttataactctataacaattatttttacttgtgaactagtcgatgtgggctcttatgatttgtata |
36379089 |
T |
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| Q |
535 |
cgtagaagtttcctgtgtcacacttctctcccaatccataaatg |
578 |
Q |
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| T |
36379090 |
cgtagaagtttcctgtgtcacacttctctcccaatccataaatg |
36379133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 168; E-Value: 1e-89
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 36378441 - 36378647
Alignment:
| Q |
1 |
ctcagctttccagcattcaaagcttcagggttaattctaagacaagaaaataaaatctcattgttgaggttctttggaagtttcctgaaattcggtggat |
100 |
Q |
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| T |
36378441 |
ctcagctttccagcattcaaagcttcagggttaatgctaagacaagaaaataaaatctcattgttgaggttctttggaagtttcctgaaattcggtggat |
36378540 |
T |
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| Q |
101 |
taaaagctgacattgcaatatgttgctttgcaatgaatatttgtagaaataatgcttttgttgatgtgttaacttttattatgaccacaattgaacatgc |
200 |
Q |
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| T |
36378541 |
taaaagctgaca---------------ttgcaatgaatatttgtagaaataatgcttttgttgatgtgttaacttttattatgaccacaattgaacatgc |
36378625 |
T |
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| Q |
201 |
taagcaagaaggtaggagcaaa |
222 |
Q |
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| T |
36378626 |
taagcaagaaggtaggagcaaa |
36378647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 230 - 334
Target Start/End: Original strand, 36368337 - 36368440
Alignment:
| Q |
230 |
ttgaatattgttatttctttcttgttaaaactcagggtcttctttctatcttccacttcctttttggttcggaaatatgaaattgaattgaattaaagaa |
329 |
Q |
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| T |
36368337 |
ttgaatattgttatttttttcttgttaaaactctggg-cttctttctatcttccatttcctttttggttcgcaaatatgaaattgaattgaatcaaagaa |
36368435 |
T |
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| Q |
330 |
taaga |
334 |
Q |
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||||| |
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| T |
36368436 |
taaga |
36368440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 645 - 720
Target Start/End: Original strand, 36379199 - 36379274
Alignment:
| Q |
645 |
cttcagtactcaattccatgtttaatggaagatattaaaaggaatattatcactattatatatttacaagatcctc |
720 |
Q |
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| T |
36379199 |
cttcagtactcaattccatgtttaatggaagatattaaaaggaatattatcactattatatatttacaagatcctc |
36379274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 143 - 218
Target Start/End: Original strand, 36367825 - 36367900
Alignment:
| Q |
143 |
gtagaaataatgcttttgttgatgtgttaacttttattatgaccacaattgaacatgctaagcaagaaggtaggag |
218 |
Q |
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| T |
36367825 |
gtagaaataatgcttttgttgatgagttaacttttattatgagcacaaatgaacatgctaaacaagaaggttggag |
36367900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 324 - 416
Target Start/End: Original strand, 36368461 - 36368549
Alignment:
| Q |
324 |
aaagaataagatggg-aataaatttcacaattacgaattgtctatttctatcacctcttcatctttatttcaacccaaaagttcaatatttcat |
416 |
Q |
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| T |
36368461 |
aaagaataagatggggaataaatttcacaattacgaattggctatttcta-----ccttcatcttcgtttcaacccaaaagtgcaatatttcat |
36368549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 90
Target Start/End: Original strand, 36372883 - 36372952
Alignment:
| Q |
21 |
agcttcagggttaattctaagacaagaaaataaaatctcattgttgaggttctttggaagtttcctgaaa |
90 |
Q |
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| T |
36372883 |
agcttcagggttcatgccaagacagggaaagaaaatctcattgttaagattctttggaagtgtcctgaaa |
36372952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 493 - 543
Target Start/End: Original strand, 36375873 - 36375924
Alignment:
| Q |
493 |
tttacttgtgaactagtcgatgtgggctc-tatgatttgtatacgtagaagt |
543 |
Q |
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| T |
36375873 |
tttacttgtgaactggtcgatgtgggttcttatgatttgtatacatagaagt |
36375924 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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