View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10319_low_21 (Length: 333)
Name: NF10319_low_21
Description: NF10319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10319_low_21 |
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Alignment Details
Target: chr2 (Bit Score: 257; Significance: 1e-143; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 18 - 316
Target Start/End: Complemental strand, 35188761 - 35188464
Alignment:
| Q |
18 |
ctaagtaggtgaaccactcaccataatggatgctttagggtcataccacttgtcaagaagttaaaaagggaaattaatgattagttttatgtagaaaaaa |
117 |
Q |
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| T |
35188761 |
ctaagtaggtgaaccactcaccataatggatgctttagggtcataccacttgtcaagaagttaaaaagggaaattaatgaatagttttatgtagaaaaaa |
35188662 |
T |
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| Q |
118 |
tcaacttataaggtttcaacgtgttgaatgcattattcccaagataaactttcannnnnnnatcttctaaactagtgttttaggacgcatttagggcact |
217 |
Q |
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| T |
35188661 |
tcaacttataaggtttcaacgtgttgaatgcattattcccaagataaactttca-ttttttatcttcttaactagtgttttaggacgcatttagggcact |
35188563 |
T |
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| Q |
218 |
tgttagcatttcctttaggttaaatgtgatatgacgtgatacatgattataacctaacataacaattatgtaatgtgcttacgtatcccagtctctgtg |
316 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
35188562 |
tgttagcatttcctttaagttaaatgtgatatgacgtgatacatgattataacctaacataacaattatgtaacgtgcttacgtatcccagtctctgtg |
35188464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 98 - 170
Target Start/End: Original strand, 752178 - 752250
Alignment:
| Q |
98 |
ttagttttatgtagaaaaaatcaacttataaggtttcaacgtgttgaatgcattattcccaagataaactttc |
170 |
Q |
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| T |
752178 |
ttagttttatgtagaaaaaattactttttcaagtttcaatgtgttgaatgcatcaatcccaagacaaaatttc |
752250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 65 - 170
Target Start/End: Original strand, 30094265 - 30094368
Alignment:
| Q |
65 |
acttgtcaagaagttaaaaagggaaattaatgattagttttatgtagaaaaaatcaacttataaggtttcaacgtgttgaatgcattattcccaagataa |
164 |
Q |
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| T |
30094265 |
acttgttaagaagtcaaaa--ggaaataaatgatgaatttaatgtagaaacaatcaatttttaaagtttcaagtggttgaatgcaccattcccaagataa |
30094362 |
T |
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| Q |
165 |
actttc |
170 |
Q |
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| |||| |
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| T |
30094363 |
aatttc |
30094368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 130 - 170
Target Start/End: Complemental strand, 24093846 - 24093806
Alignment:
| Q |
130 |
gtttcaacgtgttgaatgcattattcccaagataaactttc |
170 |
Q |
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| T |
24093846 |
gtttcaaggtgttgaatacatcattcccaagataaactttc |
24093806 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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