View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10319_low_24 (Length: 325)
Name: NF10319_low_24
Description: NF10319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10319_low_24 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 222; Significance: 1e-122; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 266
Target Start/End: Complemental strand, 14592201 - 14591936
Alignment:
| Q |
1 |
gttatgaagtattatctatgacatgtccctttgcaggtaatctaataaaacttgctttctttgttataatgaaatttctttaatctagtgaaattattat |
100 |
Q |
| |
|
|||||||||||||||||||| ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
14592201 |
gttatgaagtattatctatggtatgtctctttgcaagtaatctaataaaacttgctttctttgttataatgaaatttctttaatctagtaaaattattat |
14592102 |
T |
|
| Q |
101 |
gatttactaactggttttaatttacagtttatcataaatggttgctgcaatttaataagtgggattctggctgttatagatttctagggctgcagtttag |
200 |
Q |
| |
|
|||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
14592101 |
gatttactaactagttttaatttatagtttatcataaatggttgctgcaatttaataagtgggattctggctgttatagacttctagggctgcagtttag |
14592002 |
T |
|
| Q |
201 |
gtttgttttcgaatatcattcattcatatttgtaaatttagaacattaaacatattgttgtttagg |
266 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||| |||||| |||||||||||||||||| |
|
|
| T |
14592001 |
gtttgttttcaaatatcattcattcatatttgtaaatttataacattcaacatattgttgtttagg |
14591936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 304
Target Start/End: Original strand, 13309368 - 13309674
Alignment:
| Q |
1 |
gttatgaagtattatctatgacatgtccctttgcaggtaatctaataaaacttgctttctttgttataatgaaattt-ctttaatctagtgaaa--ttat |
97 |
Q |
| |
|
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| |
|
|
| T |
13309368 |
gttatgaattattatctatggcatgtccctttgcaggtaatctaataaaacttgctttctttgttataatgaaattttctttaatctagtgaaaaattat |
13309467 |
T |
|
| Q |
98 |
tatgatttactaactggttttaatttacagtttatcataaatggttgctgcaatttaataagtgggattctggctgttatagatttctagggctgcagtt |
197 |
Q |
| |
|
||||||||||||||| |||||||||||| |||||||| ||||||||||||||||||| ||||||| ||||||||| |||| |||||||||||||||| |
|
|
| T |
13309468 |
tatgatttactaactaattttaatttacattttatcattaatggttgctgcaatttaa---gtgggatactggctgttgtagacttctagggctgcagtt |
13309564 |
T |
|
| Q |
198 |
taggtttgttttcgaatatcattcattcatatttgtaaatttagaacattaaacatattgttgtttaggnnnnnnnnn---aacagttatattcattcct |
294 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
13309565 |
caggtttgttttcaaatatcattcattcatatttgtaaatttagaacattaaacatattgttgtttaggtttttttttttaaacagttatattcattcct |
13309664 |
T |
|
| Q |
295 |
ttgttgtgca |
304 |
Q |
| |
|
|||||||||| |
|
|
| T |
13309665 |
ttgttgtgca |
13309674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 276 - 308
Target Start/End: Complemental strand, 14591921 - 14591889
Alignment:
| Q |
276 |
aacagttatattcattcctttgttgtgcagcat |
308 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| |
|
|
| T |
14591921 |
aacagttatattcatttctttgttgtgcagcat |
14591889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 196; Significance: 1e-106; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 1 - 265
Target Start/End: Complemental strand, 49282088 - 49281826
Alignment:
| Q |
1 |
gttatgaagtattatctatgacatgtccctttgcaggtaatctaataaaacttgctttctttgttataatgaaattt-ctttaatctagtgaaattatta |
99 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| ||||| ||| ||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| |
|
|
| T |
49282088 |
gttatgaagtattatctatggcatgtccctttggaggtattctgataaaacttgctttctttgttataatgaaattttctttaatctaatgaaattatta |
49281989 |
T |
|
| Q |
100 |
tgatttactaactggttttaatttacagtttatcataaatggttgctgcaatttaataagtgggattctggctgttatagatttctagggctgcagttta |
199 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| |||| ||||||||| |||||||||||||||| | |
|
|
| T |
49281988 |
tgatttactaactgattttaatttacagtttatcataaatggttgctgcaatttaa---gtgggatactggatgttatagacttctagggctgcagttca |
49281892 |
T |
|
| Q |
200 |
ggtttgttttcgaatatcattcattcatatttgtaaatttagaacattaaacatattgttgtttag |
265 |
Q |
| |
|
||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49281891 |
ggtttgttttcaaatatcattcatgcatatttgtaaatttagaacattaaacatattgttgtttag |
49281826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 308
Target Start/End: Original strand, 13935758 - 13936065
Alignment:
| Q |
1 |
gttatgaagtattatctatgacatgtccctttgcaggtaatctaataaaacttgctttctttgttataatgaaattt-ctttaatctagtgaaattatta |
99 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||| |||||||||| |||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
13935758 |
gttatgaagtattatctatggcatgtccctttgcaggtaatctgataaaacttgttttctttgttataatgaaattttctttaatctagtgaaattatta |
13935857 |
T |
|
| Q |
100 |
tgatttactaactggttttaatttacagtttatcataaatggttgctgcaatttaataagtgggattctggctgttatagatttctagggctgcagttta |
199 |
Q |
| |
|
|||||||||||||| || |||||||||||||||||||||||||||||||||||||| ||||||| || | ||||||||| |||||||||| ||||| | |
|
|
| T |
13935858 |
tgatttactaactgattgtaatttacagtttatcataaatggttgctgcaatttaa---gtgggatactagatgttatagacttctagggctccagttca |
13935954 |
T |
|
| Q |
200 |
ggtttgttttcgaatatcattcattcatatttgtaaatttagaacattaaacatattgttgtttag--gnnnnnnnnnaacagttatattcattcctttg |
297 |
Q |
| |
|
||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
13935955 |
ggtttgttttcaaatatcattcatgcatatttgtaaatttagaacattaaacatattgttgtttagattttttttttaaacagttatattcattcctttg |
13936054 |
T |
|
| Q |
298 |
ttgtgcagcat |
308 |
Q |
| |
|
||||||||||| |
|
|
| T |
13936055 |
ttgtgcagcat |
13936065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 118; Significance: 3e-60; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 2 - 266
Target Start/End: Complemental strand, 21280552 - 21280290
Alignment:
| Q |
2 |
ttatgaagtattatctatgacatgtccctttgcaggtaatctaataaaacttgctttctttgttataatgaaatttctttaatctagtgaaattattatg |
101 |
Q |
| |
|
||||||||||||||||||| ||||||| |||||| ||||||| ||||||||||||| |||||||||||||| | |||||||||||||| |||||||||| |
|
|
| T |
21280552 |
ttatgaagtattatctatggcatgtccttttgcaagtaatctgataaaacttgcttgttttgttataatgaattatctttaatctagtgcaattattatg |
21280453 |
T |
|
| Q |
102 |
atttactaactggttttaatttacagtttatcataaatggttgctgcaatttaataagtgggattctggctgttatagatttctag--ggctgcagttta |
199 |
Q |
| |
|
||||||||| | ||||| ||| |||||||| | ||||| ||||||||||| | ||||||||| | |||||||||| |||||| ||||||||| | |
|
|
| T |
21280452 |
atttactaagtaattttagtttgcagtttatta-aaatgattgctgcaatt---tcagtgggatttagactgttatagacttctagaaagctgcagttca |
21280357 |
T |
|
| Q |
200 |
ggtttgttttcgaatatcattcattcatatttgtaaatttagaacattaaacatattgttgtttagg |
266 |
Q |
| |
|
||||||||||| || |||||| || ||||||| ||||||||||||||| |||||||||||||||||| |
|
|
| T |
21280356 |
ggtttgttttcaaacatcatttatgcatatttttaaatttagaacattgaacatattgttgtttagg |
21280290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 15 - 132
Target Start/End: Complemental strand, 4855388 - 4855270
Alignment:
| Q |
15 |
tctatgacatgtccc-tttgcaggtaatctaataaaacttgctttctttgttataatgaaatttctttaatctagtgaaattattatgattta-ctaact |
112 |
Q |
| |
|
|||||| |||||||| |||||||||||| | |||||||||| || ||||| ||||| || | |||||||||||||| |||||||| ||| | ||| | |
|
|
| T |
4855388 |
tctatggcatgtcccctttgcaggtaatttgataaaacttg-ttgctttggaataataaattatctttaatctagtgcaattattaacattgatgtaatt |
4855290 |
T |
|
| Q |
113 |
ggttttaatttacagtttat |
132 |
Q |
| |
|
| |||||||||||||||||| |
|
|
| T |
4855289 |
gattttaatttacagtttat |
4855270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University