View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10319_low_27 (Length: 317)
Name: NF10319_low_27
Description: NF10319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10319_low_27 |
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Alignment Details
Target: chr1 (Bit Score: 132; Significance: 1e-68; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 107 - 302
Target Start/End: Complemental strand, 5652093 - 5651906
Alignment:
| Q |
107 |
tgataagggaaagttaactaacatattataagggaaacaacgttggctaggtattcaacaatggtagggtccttcggccaccttgttgaacaataaacta |
206 |
Q |
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| T |
5652093 |
tgataagggaaagttaacttacatattataagggaaacaacgttggctaggtattcaacaatggtagggtccttcggccaccttgttgaacaataaacta |
5651994 |
T |
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| Q |
207 |
atgaatgaatagtgtaatgttggtaatttggtattcaaagagtcgatagacnnnnnnnnnggctaatgcaagtcataagcatttccccaaataatg |
302 |
Q |
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| T |
5651993 |
atgaatgaatagtgtaatgtt--------ggtattcaaagagtggatagacaaaaaaaaaggctaatgcaagtcataagcatttccccaaataatg |
5651906 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 172 - 302
Target Start/End: Complemental strand, 22966368 - 22966238
Alignment:
| Q |
172 |
agggtccttcggccaccttgttgaacaataaactaatgaatgaatagtgtaatgttggtaatttggtattc-aaagagtcgatagacnnnnnnnnnggct |
270 |
Q |
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| T |
22966368 |
agggtccttcggcaaccttgttgaacaataaactaatgaatgaatagtgtaatattggtaatttggtattcaaaagagtcgatagac-aaaaaaaaggct |
22966270 |
T |
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| Q |
271 |
aatgcaagtcataagcatttccccaaataatg |
302 |
Q |
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| T |
22966269 |
aatgcaagtcataagcatttcacaaaataatg |
22966238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 76; Significance: 4e-35; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 172 - 302
Target Start/End: Original strand, 38953555 - 38953685
Alignment:
| Q |
172 |
agggtccttcggccaccttgttgaacaataaactaatgaatgaatagtgtaatgttggtaatttggtattc-aaagagtcgatagacnnnnnnnnnggct |
270 |
Q |
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| T |
38953555 |
agggtccttcggcaaccttgttgaacaataaactaatgaatgaatagtgtaatattggtaatttggtattcaaaagagtcgatagac-caaaaaaaggct |
38953653 |
T |
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| Q |
271 |
aatgcaagtcataagcatttccccaaataatg |
302 |
Q |
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||||||||||||||||||||| | |||||||| |
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| T |
38953654 |
aatgcaagtcataagcatttcacaaaataatg |
38953685 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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