View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10319_low_30 (Length: 297)
Name: NF10319_low_30
Description: NF10319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10319_low_30 |
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Alignment Details
Target: chr2 (Bit Score: 263; Significance: 1e-147; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 18 - 288
Target Start/End: Original strand, 43457811 - 43458081
Alignment:
| Q |
18 |
caattgtagtctgttatctgttactccttgctctttcatttcctattcaaagttcaaattaaaacttcataggtacatttgatgattcatattgtagagt |
117 |
Q |
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| T |
43457811 |
caattgtagcctattatctgttactccttgctctttcatttcctattcaaagttcaaattaaaacttcataggtacatttgatgattcatattgtagagt |
43457910 |
T |
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| Q |
118 |
catatggaaaaaggctatgaggatgatgttcttacagctggcatatcgacatagtaattaacactatcaaaagacattgcaagtggttgaaaaggaagaa |
217 |
Q |
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| T |
43457911 |
catatggaaaaaggctatgaggatgatgttcttacagctggcatatcgacatagtaattaacactatcaaaagacattgcaagtggttgaaaaggaagaa |
43458010 |
T |
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| Q |
218 |
ccattcctctctttggagcaactccagtggctgactcaagtgttggattatctctactacccattctctgc |
288 |
Q |
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| T |
43458011 |
ccattcctctctttggagcaactccagtggctgactcaagtgttggattatctctactacccattctctgc |
43458081 |
T |
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Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 148 - 227
Target Start/End: Complemental strand, 4501015 - 4500936
Alignment:
| Q |
148 |
cttacagctggcatatcgacatagtaattaacactatcaaaagacattgcaagtggttgaaaaggaagaaccattcctct |
227 |
Q |
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| T |
4501015 |
cttactgcaggcatgtccacaaagtaattaacactctcaaaggacattgcaagtggttggaaaggtagaatcattcctct |
4500936 |
T |
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