View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10319_low_31 (Length: 294)
Name: NF10319_low_31
Description: NF10319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10319_low_31 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 200; Significance: 1e-109; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 70 - 277
Target Start/End: Complemental strand, 29271179 - 29270972
Alignment:
| Q |
70 |
gtacaaggtagtctccaagaccttttttgttgcttaaatatggtctctaacacaacatgaataagcttctaacttcatctcagaagcttggtaagcatct |
169 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
29271179 |
gtacaaggtagtctccaagaccttttttgttgcttaaatatggtctctaacacaacatgaataagcttctaacttcatctcagaagattggtaagcatct |
29271080 |
T |
|
| Q |
170 |
ctagtccaccgtgacaattggatcaaaataacctatacacatggaatcaacagacaaataagtgatgaatccaatcttagcaagcatcataaaaggatag |
269 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29271079 |
ctagtccaccgtgacaattggatcaaaataacctatacacatggaatcaacggacaaataagtgatgaatccaatcttagcaagcatcataaaaggatag |
29270980 |
T |
|
| Q |
270 |
aatacaat |
277 |
Q |
| |
|
|||||||| |
|
|
| T |
29270979 |
aatacaat |
29270972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 205 - 275
Target Start/End: Complemental strand, 29283412 - 29283345
Alignment:
| Q |
205 |
tacacatggaatcaacagacaaataagtgatgaatccaatcttagcaagcatcataaaaggatagaataca |
275 |
Q |
| |
|
||||||||||||||| ||||||| |||| |||||||||| ||||||||| ||||||||||| ||||||| |
|
|
| T |
29283412 |
tacacatggaatcaatagacaaacaagtaatgaatccaaacttagcaag---cataaaaggattgaataca |
29283345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 208 - 277
Target Start/End: Complemental strand, 29288856 - 29288790
Alignment:
| Q |
208 |
acatggaatcaacagacaaataagtgatgaatccaatcttagcaagcatcataaaaggatagaatacaat |
277 |
Q |
| |
|
|||||||||||||||||||| |||| |||||||||| |||||| || ||||||||||| ||||||||| |
|
|
| T |
29288856 |
acatggaatcaacagacaaacaagtaatgaatccaaacttagctag---cataaaaggattgaatacaat |
29288790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University