View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10319_low_32 (Length: 285)
Name: NF10319_low_32
Description: NF10319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10319_low_32 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 154; Significance: 1e-81; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 27646117 - 27646328
Alignment:
| Q |
1 |
tgggactgaggagaacatacagctcaatggaagtagtccctgcagttgcgtgcagatgatactggtttatagnnnnnnnn---tgactgttattaaaagt |
97 |
Q |
| |
|
||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
27646117 |
tgggactgaggggaacatacagctcaatgaaagtagtctctgcagttgcgtgcagatgatactggtttatagaagaaaaaaaatgactgttattaaaagt |
27646216 |
T |
|
| Q |
98 |
ttttgtggtatacagatgaaataaaagtcgaacaatattattacagataatgcaattcaacgttggtagaaggatatgagtttcatctccctcagcttag |
197 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
27646217 |
ttttgtggtatacagatgaaataaaagtcgaacaatattattacagataatgcaattcaatgttggtagaagggtatgagtttcatctccctcagcttag |
27646316 |
T |
|
| Q |
198 |
ccacccagaatc |
209 |
Q |
| |
|
|||||||||||| |
|
|
| T |
27646317 |
ccacccagaatc |
27646328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 146 - 267
Target Start/End: Original strand, 27643059 - 27643180
Alignment:
| Q |
146 |
aatgcaattcaacgttggtagaaggatatgagtttcatctccctcagcttagccacccagaatctgatactcttaaacgtatctgcatactcaaagaacc |
245 |
Q |
| |
|
|||||||||||| ||| ||||| || |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27643059 |
aatgcaattcaatgtttgtagacgggtatgagtttcatctccctcaacttagccacccagaatctgatactcttaaacgtatctgcatactcaaagaacc |
27643158 |
T |
|
| Q |
246 |
catagttcttactcttgttcat |
267 |
Q |
| |
|
|||| | |||||| |||||||| |
|
|
| T |
27643159 |
cataatccttacttttgttcat |
27643180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 159 - 267
Target Start/End: Complemental strand, 50247819 - 50247711
Alignment:
| Q |
159 |
gttggtagaaggatatgagtttcatctccctcagcttagccacccagaatctgatactcttaaacgtatctgcatactcaaagaacccatagttcttact |
258 |
Q |
| |
|
|||||||| ||| ||| ||||||||||||||||||||||||||||||| | ||||||||||||||||||| |||||||| || |||||||| | ||||| |
|
|
| T |
50247819 |
gttggtaggagggtataagtttcatctccctcagcttagccacccagagtttgatactcttaaacgtatcagcatactctaaaaacccataatctttact |
50247720 |
T |
|
| Q |
259 |
cttgttcat |
267 |
Q |
| |
|
||||||||| |
|
|
| T |
50247719 |
cttgttcat |
50247711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 153 - 267
Target Start/End: Complemental strand, 50254962 - 50254848
Alignment:
| Q |
153 |
ttcaacgttggtagaaggatatgagtttcatctccctcagcttagccacccagaatctgatactcttaaacgtatctgcatactcaaagaacccatagtt |
252 |
Q |
| |
|
||||| ||| ||||| || |||||| ||||||||||||||||| |||||||||| | | ||| |||||||| || ||||||||||| ||| |||| || |
|
|
| T |
50254962 |
ttcaatgttcgtagatgggtatgagattcatctccctcagcttcatcacccagaatttcacactattaaacgtctcagcatactcaaaaaactcataatt |
50254863 |
T |
|
| Q |
253 |
cttactcttgttcat |
267 |
Q |
| |
|
|||||||| ||||| |
|
|
| T |
50254862 |
tttactcttattcat |
50254848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University