View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10319_low_35 (Length: 282)
Name: NF10319_low_35
Description: NF10319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10319_low_35 |
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Alignment Details
Target: chr8 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 265
Target Start/End: Original strand, 43958641 - 43958905
Alignment:
| Q |
1 |
ggaaagaaaatattacggtcctgagaccaatatgtattccaaatctaacattttcagccaaaccagtactgatctaggtaagtaggtgttgaaagtttgt |
100 |
Q |
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| T |
43958641 |
ggaaagaaaatattacggtcctgagaccaatatgtattccag--ctaccattttcagccaaaccagtaccgatctaggcaagtaggtgttgaaagtttgt |
43958738 |
T |
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| Q |
101 |
tttggtgttgatgaaaaacgtatcagatgaagataaaatggtttgatgaa--ggttcagtgatatgagatgaaagggttcatcattgcaaaggaaaaaac |
198 |
Q |
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| T |
43958739 |
tttggtgttgatgaaaaacctatcagatgaagataaaatggtttgatgaaagggttaagtgatatgagatgaaagggttcatcattgcaaaggaaaaaac |
43958838 |
T |
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| Q |
199 |
tagaaaaggaaatgaatatgattgtggtgaataatttggggttgatggagaaattttggctcatgat |
265 |
Q |
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| T |
43958839 |
tagaaaaggaaatgaatataattgtggtgaataatttggggttgatgcagaaattttggctcatgat |
43958905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 267
Target Start/End: Original strand, 10918894 - 10919160
Alignment:
| Q |
1 |
ggaaagaaaatattacggtcctgagaccaatatgtattccaaatctaacattttcagccaaaccagtactgatctaggtaagtaggtgttgaaagtttgt |
100 |
Q |
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| T |
10918894 |
ggaaagaaaatattacggtcctgagaccaatatgtattccag--ctaccattttcagccaaaccaataccgatctagacaagtaggtgttgaaagtttgt |
10918991 |
T |
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| Q |
101 |
tttggtgttgatgaaaaacgtatcagatgaagataaaatggtttgatgaa--ggttcagtgatatgagatgaaagggttcatcattgcaaaggaaaaaac |
198 |
Q |
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| T |
10918992 |
tttggtgttgatgaaaaacgtatcagatgaagataaaatggtttgacgaaagggttcagtgatatgagatgaaagggttcatcatagcaaaggaaaaaac |
10919091 |
T |
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| Q |
199 |
tagaaaaggaaatgaatatgattgtggtgaataatttggggttgatggagaaattttggctcatgattg |
267 |
Q |
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| T |
10919092 |
tagaaaaggaaatgaatatgattgtggtgaataatttggggttgatacagaaattttggctcatgattg |
10919160 |
T |
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