View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10319_low_42 (Length: 242)
Name: NF10319_low_42
Description: NF10319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10319_low_42 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 18 - 242
Target Start/End: Complemental strand, 37097635 - 37097411
Alignment:
| Q |
18 |
caagtatagtggatatctaggaagccttaagaaagagtttttgaagaagaaaaagaatggaaagttaccaaaggaagctcgacaacaactacttgattgg |
117 |
Q |
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| T |
37097635 |
caagtatagtggatatctaggaagccttaagaaagagtttttgaagaagaaaaagaatggaaagttaccaaaggaagctcgacaacaactacttgattgg |
37097536 |
T |
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| Q |
118 |
tggagcaggcattacaaatggccttacccatcggtaactaaattctacatctttcacgatttcatatatcaacaattatgccgctggaatgtttcttagc |
217 |
Q |
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| T |
37097535 |
tggagcaggcattacaaatggccttacccatcggtaactaaattctacatctttcacgatttcatatatcaacaattatgtcactggaatgtttcttagc |
37097436 |
T |
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| Q |
218 |
acacatgcatcttgatattaatgtt |
242 |
Q |
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| T |
37097435 |
acacatgcatcttgatattaatgtt |
37097411 |
T |
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Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 25 - 154
Target Start/End: Complemental strand, 8792925 - 8792796
Alignment:
| Q |
25 |
agtggatatctaggaagccttaagaaagagtttttgaagaagaaaaagaatggaaagttaccaaaggaagctcgacaacaactacttgattggtggagca |
124 |
Q |
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| T |
8792925 |
agtggatacttaggcagtctgaagcaagagtttatgaagaaaaggaaaaaaggaaagcttccaaaagaagcaaggcaacaattgcttgaatggtggagca |
8792826 |
T |
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| Q |
125 |
ggcattacaaatggccttacccatcggtaa |
154 |
Q |
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| T |
8792825 |
gacattacaaatggccttacccatctgtaa |
8792796 |
T |
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