View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10319_low_45 (Length: 239)
Name: NF10319_low_45
Description: NF10319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10319_low_45 |
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Alignment Details
Target: chr8 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 18 - 231
Target Start/End: Original strand, 891148 - 891361
Alignment:
| Q |
18 |
attgtgagtacttgaagagatgctgtgagactctaactgatgagaataggaggttgcaaaaggaagtgcaagagcttagggcattgaagttatctccaca |
117 |
Q |
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| T |
891148 |
attgtgagtacttgaagagatgctgtgagactctaactgatgagaataggaggttgcaaaaggaagtgcaagagcttagggcattgaagttatctccaca |
891247 |
T |
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| Q |
118 |
actctacatgcaaatgaatcctcccaccactctcacaatgtgcccttcgtgcgagcgtgttgccgtgtcatccgcatcctcctcatcagcagctgctgct |
217 |
Q |
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| T |
891248 |
actctacatgcaaatgaatcctcccaccactctcacaatgtgcccttcgtgtgagcgtgttgccgtgtcatccgcatcctcctcatcagcagctgctgct |
891347 |
T |
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| Q |
218 |
cctccctatgcttc |
231 |
Q |
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||||||| |||||| |
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| T |
891348 |
cctccctctgcttc |
891361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 29 - 134
Target Start/End: Original strand, 4059140 - 4059245
Alignment:
| Q |
29 |
ttgaagagatgctgtgagactctaactgatgagaataggaggttgcaaaaggaagtgcaagagcttagggcattgaagttatctccacaactctacatgc |
128 |
Q |
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| T |
4059140 |
ttgaaaagatgttgtgagaatctaacggatgaaaatagacggttgcaaaaagaagtgcaagagttaagagcattgaaactttccccacaattctacatgc |
4059239 |
T |
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| Q |
129 |
aaatga |
134 |
Q |
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|||||| |
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| T |
4059240 |
aaatga |
4059245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 105
Target Start/End: Original strand, 23336651 - 23336738
Alignment:
| Q |
18 |
attgtgagtacttgaagagatgctgtgagactctaactgatgagaataggaggttgcaaaaggaagtgcaagagcttagggcattgaa |
105 |
Q |
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| T |
23336651 |
attgtgagtatttgaagagatgttgtgagacattaacagaagagaatagaagattacaaaaggaacttcaagagcttagagctttgaa |
23336738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 165
Target Start/End: Complemental strand, 41452065 - 41451929
Alignment:
| Q |
29 |
ttgaagagatgctgtgagactctaactgatgagaataggaggttgcaaaaggaagtgcaagagcttagggcattgaagttatctccacaactctacatgc |
128 |
Q |
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||||| || |||||||| | |||||| || ||||||||||| | || |||||||| ||||||||||| ||| |||| | || |||||| | ||||||| |
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| T |
41452065 |
ttgaaaaggtgctgtgaaaatctaacggaggagaataggagactacagaaggaagtacaagagcttagagcactgaaactttccccacaattttacatgc |
41451966 |
T |
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| Q |
129 |
aaatgaatcctcccaccactctcacaatgtgcccttc |
165 |
Q |
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|||||| || || || ||||| || ||||||||||| |
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| T |
41451965 |
aaatgacaccaccaactactcttactatgtgcccttc |
41451929 |
T |
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