View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10319_low_48 (Length: 234)
Name: NF10319_low_48
Description: NF10319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10319_low_48 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 29 - 234
Target Start/End: Original strand, 19694753 - 19694963
Alignment:
| Q |
29 |
gaaagtataataaatttaaattaaaaagtgatttgtaagttagtagactttttgactttttagagaaaaccctattgaaatcctatgnnnnnnnnnnn-- |
126 |
Q |
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| T |
19694753 |
gaaagtataataaatttaaattaaaaagtgatttgtaagttagtagactttttgactttttagagaaaaccctattgaaatcctatgttttttttttttt |
19694852 |
T |
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| Q |
127 |
---gaattccacatttttagggttttgccatgtgccaatttgcactggacaataaaaaactagtaaaatagcaaacattaaaaatagcaatgaagagtat |
223 |
Q |
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| T |
19694853 |
tttgaattccacatttttagggttttgccatgtgccaatttgcaatggacaataaaaaactagtaaaatagaaaacataaaaaatagagatgaagagtat |
19694952 |
T |
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| Q |
224 |
tgaacaattaa |
234 |
Q |
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| T |
19694953 |
tgaacaattaa |
19694963 |
T |
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