View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10319_low_5 (Length: 570)
Name: NF10319_low_5
Description: NF10319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10319_low_5 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 438; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 35 - 555
Target Start/End: Complemental strand, 41100124 - 41099599
Alignment:
| Q |
35 |
tttttccattaactaaatactttgataggaggaaagagattgcaagttttgggcaacaagatggtgaatctctctaggaagcttgaaataggatcaaact |
134 |
Q |
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||||||||||||||||||||||| |||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
41100124 |
tttttccattaactaaatactttaatagaaagaaagagattgcaagttttgggcaacaagatggtgaatctctctaggaagcttgaaataggttcaaact |
41100025 |
T |
|
| Q |
135 |
acttctcaagaggtgtcctacagt-------tttggaggcgcaaacgtgcacgctcttacatgcctcagctggaagtattatgaaaaataagactgatgc |
227 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41100024 |
acttctcaagaggtgtcctacaggctacaggtttggaggcgcaaacgtgcacgctcttacatgcctcagctggaagtattatgaaaaataagactgatgc |
41099925 |
T |
|
| Q |
228 |
agacgtgagggacttgactgataacatggacctctaagtgaaggctgtgatgtacagaatttaattatttgctctgtgttattgaataacacaga--att |
325 |
Q |
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||||||||||||||||||||||||||||||||| || ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
41099924 |
agacgtgagggacttgactgataacatggacct--aaatgaaggc-gtgatgtacagaatttaattatttgctctgtgttattgaataacacagagaatt |
41099828 |
T |
|
| Q |
326 |
aattaccactgatatttcaataacacagaattatttgctcctattttattagctcattacaacttaggttgtaaaaacccattttctgccactagccatc |
425 |
Q |
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||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41099827 |
aattaccgctgatatttcaataacacagaat-atttgctcctattttattagctcattacaacttaggttgtaaaaacccattttctgccactagccatc |
41099729 |
T |
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| Q |
426 |
atattttgattgaagtatcttatagttttcaaccactctagagtgcttcatgaaaaggctccataataagatattatagacttataagcagtaaaagttc |
525 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41099728 |
atattttgattgaagtatcttatagttttcaaccactctagagtgcttcatgaaaaggctccataataagatattatagacttataagcagtaaaagttc |
41099629 |
T |
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| Q |
526 |
tattttcaaaacgtccatattgacctcact |
555 |
Q |
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| T |
41099628 |
tattttcaaaacgtccatattgacctcact |
41099599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 63; Significance: 4e-27; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 405 - 522
Target Start/End: Complemental strand, 40068641 - 40068526
Alignment:
| Q |
405 |
cattttctgccactagccatcatattttgattgaagtatcttatagttttcaaccactctagagtgcttcatgaaaaggctccataataagatattatag |
504 |
Q |
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||||||| |||| ||||||| ||||||||||||||||| ||||||||||||||| ||| |||| ||||||| ||||||||||||||| ||| || ||| |
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| T |
40068641 |
cattttccgccatgagccatcgtattttgattgaagtattttatagttttcaaccgctccagagagcttcataaaaaggctccataatcagaaat--tag |
40068544 |
T |
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| Q |
505 |
acttataagcagtaaaag |
522 |
Q |
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|||||||||||||||||| |
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| T |
40068543 |
acttataagcagtaaaag |
40068526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 405 - 542
Target Start/End: Original strand, 25899621 - 25899756
Alignment:
| Q |
405 |
cattttctgccactagccatcatattttgattgaagtatcttatagttttcaaccactctagagtgcttcatgaaaaggctccataataagatattatag |
504 |
Q |
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||||||| |||| |||| || ||||||||||||||||||||||||||||||||| || |||| ||||||| | |||||||| || | ||| || ||| |
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| T |
25899621 |
cattttccgccatgagccgtcgtattttgattgaagtatcttatagttttcaaccgcttcagagagcttcataagaaggctccgtagtcagaaat--tag |
25899718 |
T |
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| Q |
505 |
acttataagcagtaaaagttctattttcaaaacgtcca |
542 |
Q |
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| T |
25899719 |
acttataagcagtagaagatccatattcaaaacctcca |
25899756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 6 - 45
Target Start/End: Complemental strand, 493949 - 493910
Alignment:
| Q |
6 |
agtagcataggtcaaattatttatatttatttttccatta |
45 |
Q |
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| T |
493949 |
agtagcaaaagtcaaattatttatatttatttttccatta |
493910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 6 - 45
Target Start/End: Complemental strand, 42265114 - 42265075
Alignment:
| Q |
6 |
agtagcataggtcaaattatttatatttatttttccatta |
45 |
Q |
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| T |
42265114 |
agtagcaaaagtcaaattatttatatttatttttccatta |
42265075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 6 - 44
Target Start/End: Complemental strand, 42250081 - 42250043
Alignment:
| Q |
6 |
agtagcataggtcaaattatttatatttatttttccatt |
44 |
Q |
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||||||| | ||||||||||||||||||||||||||||| |
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| T |
42250081 |
agtagcaaaagtcaaattatttatatttatttttccatt |
42250043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 45
Target Start/End: Complemental strand, 42275261 - 42275232
Alignment:
| Q |
16 |
gtcaaattatttatatttatttttccatta |
45 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
42275261 |
gtcaaattatttatatttatttttccatta |
42275232 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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