View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10319_low_50 (Length: 229)
Name: NF10319_low_50
Description: NF10319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10319_low_50 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 7 - 229
Target Start/End: Complemental strand, 17484920 - 17484698
Alignment:
| Q |
7 |
caattctgtgggtgaacctgagattctttgtaataaccgtggtgttgattttgttgaagctgttgctgatgttgaacttcaatgcctcaatttttataac |
106 |
Q |
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| T |
17484920 |
caattctgtgggtgaacctgagattctttgtaataaccgtggtgttgattttgttgaagctgttgctgatgttgagcttcaatgcctcaatttttataac |
17484821 |
T |
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| Q |
107 |
cctgatgaatctgttgaaggaaagtttgttcctaagaagaagcatggcgtgctcgcagtccaggtataaaactaaggggtgacaaaatggattgattgaa |
206 |
Q |
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| T |
17484820 |
cctgatgaatctgttgaaggaaagtttgttcctaagaagaagcatggcgtgctcgcaatccaggtataaaactaaggggtgacaaaatggatgggttgaa |
17484721 |
T |
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| Q |
207 |
tatattttatttggacagtaata |
229 |
Q |
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| T |
17484720 |
tatatttttttcggacagtaata |
17484698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 7 - 229
Target Start/End: Complemental strand, 17507195 - 17506973
Alignment:
| Q |
7 |
caattctgtgggtgaacctgagattctttgtaataaccgtggtgttgattttgttgaagctgttgctgatgttgaacttcaatgcctcaatttttataac |
106 |
Q |
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| T |
17507195 |
caattctgtgggtgaacctgagcttctttgtaataatcgtggtgttgattttgttgaagctgttgctgatgttgaacttcaatgcctcaatttttataac |
17507096 |
T |
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| Q |
107 |
cctgatgaatctgttgaaggaaagtttgttcctaagaagaagcatggcgtgctcgcagtccaggtataaaactaaggggtgacaaaatggattgattgaa |
206 |
Q |
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| T |
17507095 |
cctgatgaatctgttgaaggaaagtttgttcctaagaagaagcatggcgtgctcgcaatccaggtataaaactatggggtgacaaaatggatggattgaa |
17506996 |
T |
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| Q |
207 |
tatattttatttggacagtaata |
229 |
Q |
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| T |
17506995 |
tatgttttattcggacagtaata |
17506973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 57; Significance: 6e-24; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 15 - 159
Target Start/End: Complemental strand, 39545000 - 39544856
Alignment:
| Q |
15 |
tgggtgaacctgagattctttgtaataaccgtggtgttgattttgttgaagctgttgctgatgttgaacttcaatgcctcaatttttataaccctgatga |
114 |
Q |
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| T |
39545000 |
tgggtgaacctgagttactttgcaacaatcgtggagtggattttgttgaagcttttgctgatgttgagttacaatctctcaatttgtataatccagatga |
39544901 |
T |
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| Q |
115 |
atctgttgaaggaaagtttgttcctaagaagaagcatggcgtgct |
159 |
Q |
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| T |
39544900 |
aactgttgaagggaagcttgttccaaagaagaaacatggtgtgct |
39544856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 15 - 172
Target Start/End: Complemental strand, 39554314 - 39554157
Alignment:
| Q |
15 |
tgggtgaacctgagattctttgtaataaccgtggtgttgattttgttgaagctgttgctgatgttgaacttcaatgcctcaatttttataaccctgatga |
114 |
Q |
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| T |
39554314 |
tgggtgaacctgagttactttgcaacaatcgtggagtggattttgttgaagcttttgctgatgttgagttacaatctctcaatttgtataatccagatga |
39554215 |
T |
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| Q |
115 |
atctgttgaaggaaagtttgttcctaagaagaagcatggcgtgctcgcagtccaggta |
172 |
Q |
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| T |
39554214 |
aactgttgaagggaaacttgttccaaagaagaaacatggtgtgcttgctgttcaggta |
39554157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 15 - 147
Target Start/End: Complemental strand, 39587431 - 39587299
Alignment:
| Q |
15 |
tgggtgaacctgagattctttgtaataaccgtggtgttgattttgttgaagctgttgctgatgttgaacttcaatgcctcaatttttataaccctgatga |
114 |
Q |
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| T |
39587431 |
tgggtgaacctgagctactttgcaataaccgtggtgtggattttgttgaagctgttgctgatgttgagttgcaatctctcgatttgtataagccagagga |
39587332 |
T |
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| Q |
115 |
atctgttgaaggaaagtttgttcctaagaagaa |
147 |
Q |
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| T |
39587331 |
aaccattgaagggaagcttgttccaaagaagaa |
39587299 |
T |
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