View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10319_low_51 (Length: 229)
Name: NF10319_low_51
Description: NF10319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10319_low_51 |
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Alignment Details
Target: chr5 (Bit Score: 213; Significance: 1e-117; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 6 - 226
Target Start/End: Complemental strand, 41792035 - 41791815
Alignment:
| Q |
6 |
attcttaacttctaaaaaactcagcagagcttctaacactattagatgtcattaaaaaaggcaagagaaatataaattaaagagtttgaaaatgataagt |
105 |
Q |
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| T |
41792035 |
attcttaacttctaaaaaactcagcagagcttctaacactattagatgtcattaaaaaaggcaagagaaatataaattaaagagtttgaaaatgataagt |
41791936 |
T |
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| Q |
106 |
ataataatattatgacatgaaaattaaaataggatttaaagtaagataacaaaaacatcttcgacctaactatcaaagtcattcttataggtggcgagac |
205 |
Q |
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| T |
41791935 |
ataataatattatgacatgaaaattaaaataggatttaaagtaaggtaacaaaaacatcttcgacctaactatcaaagtcattcttataggtggcgggac |
41791836 |
T |
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| Q |
206 |
tgaaaataaggtgtgatattc |
226 |
Q |
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||||||||||||||||||||| |
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| T |
41791835 |
tgaaaataaggtgtgatattc |
41791815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 43 - 229
Target Start/End: Complemental strand, 41787149 - 41786965
Alignment:
| Q |
43 |
actattagatgtcattaaaaaaggcaagagaaatataaattaaagagtttgaaaatgataagtataataatattatgacatgaaaattaaaataggattt |
142 |
Q |
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| T |
41787149 |
actattagatgtcattaaaa--ggtaagagaaaaataaattgaagagtttgaaaatgataagtataataatattatgacatgaaaataaaaataggattt |
41787052 |
T |
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| Q |
143 |
aaagtaagataacaaaaacatcttcgacctaactatcaaagtcattcttataggtggcgagactgaaaataaggtgtgatattcctc |
229 |
Q |
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| T |
41787051 |
aaagtaagataaaaaaaatattttcgacctaactatcaaagtcattcttataggttgttggactgaaaataaggtgtgatattcctc |
41786965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 68 - 229
Target Start/End: Complemental strand, 41780564 - 41780401
Alignment:
| Q |
68 |
aagagaaatataaattaaagagtttgaaaatgataagtataataatattatgacatgaaaattaaaataggatttaaagtaagata--acaaaaacatct |
165 |
Q |
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| T |
41780564 |
aagagaaatataaattgaagagtatgaaaatgataagtataataatattatgatatgaaaataaaaataggatttaaagtaagataagaaaaaaatattt |
41780465 |
T |
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| Q |
166 |
tcgacctaactatcaaagtcattcttataggtggcgagactgaaaataaggtgtgatattcctc |
229 |
Q |
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| T |
41780464 |
tcgacctaactatcaaagtcattcttatacgttgttggactgaaaataaggtgtgatattcctc |
41780401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 11 - 129
Target Start/End: Original strand, 1679740 - 1679856
Alignment:
| Q |
11 |
taacttctaaaaaactcagcagagcttctaacactattagatgtcattaaaaaaggcaagagaaatataaattaaagagtttgaaaatgataagtataat |
110 |
Q |
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||||||||| ||||||| || | ||||| || |||||| | ||||||||||| | |||||||||||||||| ||||||||| |||||| ||||||||| |
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| T |
1679740 |
taacttctatgaaactcaacaaaacttctgacgctattaaacgtcattaaaaa--gtaagagaaatataaattgaagagtttgcaaatgaaaagtataat |
1679837 |
T |
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| Q |
111 |
aatattatgacatgaaaat |
129 |
Q |
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||||||||||||||||||| |
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| T |
1679838 |
aatattatgacatgaaaat |
1679856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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