View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10319_low_6 (Length: 555)
Name: NF10319_low_6
Description: NF10319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10319_low_6 |
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| [»] scaffold0064 (1 HSPs) |
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| [»] scaffold0128 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 251; Significance: 1e-139; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 18 - 336
Target Start/End: Complemental strand, 7306534 - 7306216
Alignment:
| Q |
18 |
ctgtataacttgagaactaatagagtactgaaatctagagttaacaaaaagatatgttggtactctatcaaggattatgtcgaaagcctggtctcaacct |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| |
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| T |
7306534 |
ctgtataacttgagaactaatagagtactgaaatctagagtcaacaaaaagatatgttggttctctatcaaggattatgtcgaaagtctggtctcaacct |
7306435 |
T |
|
| Q |
118 |
attgaaagtaagttttgctgcaacataatatttatttcaaattatgtacttgaggttttgacttggtttcaattgtgtgattatttcctttactttaaaa |
217 |
Q |
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|||||| ||| ||||| || |||||||||||||||||||| |||||||||| |||||| ||||||||||||||||| |||||||||||||||||||||| |
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| T |
7306434 |
attgaacgtaggtttttctccaacataatatttatttcaatttatgtactt--ggtttttacttggtttcaattgtgcgattatttcctttactttaaaa |
7306337 |
T |
|
| Q |
218 |
ctttgccatagatatggcgaatcaatcaacggatccgaatacctttttagaactccgttatc--tatatatataattttagccatataatgattttgcaa |
315 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
7306336 |
ctttgccatagatatggtgaatcaatcaacggatccgaatacctttttagaactccgttatctatatatatataattttagccatataatgattttgcaa |
7306237 |
T |
|
| Q |
316 |
ttcaatagatagtgaatattc |
336 |
Q |
| |
|
||||||||||| ||||||||| |
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|
| T |
7306236 |
ttcaatagataatgaatattc |
7306216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 18 - 289
Target Start/End: Complemental strand, 7311086 - 7310815
Alignment:
| Q |
18 |
ctgtataacttgagaactaatagagtactgaaatctagagttaacaaaaagatatgttggtactctatcaaggattatgtcgaaagcctggtctcaacct |
117 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| ||||||| |
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| T |
7311086 |
ctgtataacttgagaactaatagagtactgaaatctagagttaacaaaaagatatgttggttctctatcaaggattatgtcgaaagtctggtttcaacct |
7310987 |
T |
|
| Q |
118 |
attgaaagtaagttttgctgcaacataatatttatttcaaattatgtacttg-aggttttgacttggtttcaattgtgtgattatttcctttactttaaa |
216 |
Q |
| |
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|||||||||||||||| | |||||||||||||||||| ||||||||||| |||| ||| |||||| ||||| |||||||||||||||||||||| |
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| T |
7310986 |
attgaaagtaagtttttttctaacataatatttatttcagtttatgtacttgtttttttttactaggtttcgattgtatgattatttcctttactttaaa |
7310887 |
T |
|
| Q |
217 |
actttgccatagatatggcgaatcaatcaacggatccgaatacctttttagaactccgttatctatatatata |
289 |
Q |
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|||||| | ||| ||||| ||||||| | | |||||||||||||| |||||||||| ||||| |||||||||| |
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| T |
7310886 |
actttgtcgtag-tatggtgaatcaaccgaaggatccgaatacctgtttagaactcagttatatatatatata |
7310815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 21 - 287
Target Start/End: Original strand, 7328375 - 7328636
Alignment:
| Q |
21 |
tataacttgagaactaatagagtactgaaatctagagttaacaaaaagatatgttggtactctatcaaggattatgtcgaaagcctggtctcaacctatt |
120 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| | |
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| T |
7328375 |
tataacttgagaactaatagagtactggaatctagagttaacaaaaagatatgttggtactctatcaaggattatgtcgaaagtctggtttcaacctgct |
7328474 |
T |
|
| Q |
121 |
gaaagtaagttttgctgcaacataatatttatttcaaattatgtacttgaggttttgacttggtttcaattgtgtgattatttcctttactttaaaactt |
220 |
Q |
| |
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||||||||||||| || |||||||||||||||||||| |||||||||| |||||| ||| |||| ||||||| ||||| |||||||||| ||||| |
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| T |
7328475 |
gaaagtaagtttttctccaacataatatttatttcaatttatgtactt--agttttgccttcgttt---atgtgtgagtatttgctttactttagaactt |
7328569 |
T |
|
| Q |
221 |
tgccatagatatggcgaatcaatcaacggatccgaatacctttttagaactccgttatctatatata |
287 |
Q |
| |
|
|| ||||||||||| ||||||| | || ||||||||||| | || ||||||| ||| |||||||||| |
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|
| T |
7328570 |
tgtcatagatatggtgaatcaaccgactgatccgaatacgtgttcagaactcagttctctatatata |
7328636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 356 - 541
Target Start/End: Original strand, 7328963 - 7329143
Alignment:
| Q |
356 |
ttcactcttgagaggttgag-taagattgtgtgagaatgtgtagattttctcacttttatctcgaacaagttgggactatcaattatttctgacggtatt |
454 |
Q |
| |
|
|||||||||||||||||| | || |||||||| |||||||||||| ||| || ||| |||| ||||| ||||||| ||||| ||| ||| || ||||| |
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| T |
7328963 |
ttcactcttgagaggttgggctatgattgtgttggaatgtgtagatgttc-cattttcgtctctaacaaattgggaccatcaaatatatctaactgtatt |
7329061 |
T |
|
| Q |
455 |
atttttgggttctaccggtgacggacctaattgaaccctcacctcaccctagaagccaccttgcaacttgtttccaaatgttttctg |
541 |
Q |
| |
|
|||||||||||| ||| |||| |||| ||||||||| |||||||||||||| |||||| ||||||||||| |||||||||||| |
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| T |
7329062 |
atttttgggttccaccagtgagggacttaattgaac-----cctcaccctagaagtcaccttacaacttgtttctaaatgttttctg |
7329143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 21 - 115
Target Start/End: Complemental strand, 35205774 - 35205680
Alignment:
| Q |
21 |
tataacttgagaactaatagagtactgaaatctagagttaacaaaaagatatgttggtactctatcaaggattatgtcgaaagcctggtctcaac |
115 |
Q |
| |
|
||||||| |||||| |||||||||||||||||| | ||||||| ||||||||||||| | |||||||||||||||||||||||||||| ||||| |
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|
| T |
35205774 |
tataactggagaaccaatagagtactgaaatcttcaattaacaataagatatgttggttcactatcaaggattatgtcgaaagcctggtttcaac |
35205680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 181 - 233
Target Start/End: Complemental strand, 21218427 - 21218375
Alignment:
| Q |
181 |
tggtttcaattgtgtgattatttcctttactttaaaactttgccatagatatg |
233 |
Q |
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|
|||||||||||||||||||||||||||| ||| ||||||||| |||||||||| |
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| T |
21218427 |
tggtttcaattgtgtgattatttcctttgcttcaaaactttgtcatagatatg |
21218375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 30 - 131
Target Start/End: Complemental strand, 21218575 - 21218474
Alignment:
| Q |
30 |
agaactaatagagtactgaaatctagagttaacaaaaagatatgttggtactctatcaaggattatgtcgaaagcctggtctcaacctattgaaagtaag |
129 |
Q |
| |
|
|||||||| | |||| |||| ||||| |||||||||||||| |||||| ||| || | ||||||||||||||| |||| ||||| | ||||||||||| |
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|
| T |
21218575 |
agaactaacaaagtaaagaaagctagaattaacaaaaagataagttggtcctcagtctatgattatgtcgaaagcttggtttcaacttcttgaaagtaag |
21218476 |
T |
|
| Q |
130 |
tt |
131 |
Q |
| |
|
|| |
|
|
| T |
21218475 |
tt |
21218474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 297 - 334
Target Start/End: Original strand, 7328813 - 7328850
Alignment:
| Q |
297 |
ccatataatgattttgcaattcaatagatagtgaatat |
334 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||| |
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|
| T |
7328813 |
ccatataatgattttgcaattcaacagatagtgaatat |
7328850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 21 - 101
Target Start/End: Complemental strand, 21210339 - 21210259
Alignment:
| Q |
21 |
tataacttgagaactaatagagtactgaaatctagagttaacaaaaagatatgttggtactctatcaaggattatgtcgaa |
101 |
Q |
| |
|
|||||||| |||| ||||| |||||||||||| | | ||||| | |||||| |||||| || || | |||||||||||||| |
|
|
| T |
21210339 |
tataacttcagaaataatacagtactgaaatccaaaattaaccataagatacgttggttctgtaccgaggattatgtcgaa |
21210259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 29 - 131
Target Start/End: Complemental strand, 31442857 - 31442755
Alignment:
| Q |
29 |
gagaactaatagagtactgaaatctagagttaacaaaaagatatgttggtactctatcaaggattatgtcgaaagcctggtctcaacctattgaaagtaa |
128 |
Q |
| |
|
||||| |||||||||| ||||| ||||||||||||||||||||||||||| |||||| || |||||||||||||| |||| ||||| |||||||||| |
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|
| T |
31442857 |
gagaaataatagagtagtgaaaactagagttaacaaaaagatatgttggttctctataaaccattatgtcgaaagcttggtttcaacaagttgaaagtaa |
31442758 |
T |
|
| Q |
129 |
gtt |
131 |
Q |
| |
|
||| |
|
|
| T |
31442757 |
gtt |
31442755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 21 - 131
Target Start/End: Original strand, 42298305 - 42298415
Alignment:
| Q |
21 |
tataacttgagaactaatagagtactgaaatctagagttaacaaaaagatatgttggtactctatcaaggattatgtcgaaagcctggtctcaacctatt |
120 |
Q |
| |
|
|||||| ||||||| || |||| | |||| |||| |||||| |||||||||||||| ||| || || ||||||||||||||| |||| ||||| | || |
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|
| T |
42298305 |
tataacctgagaacaaacagagcaaagaaaactaggattaacagaaagatatgttggtcctcaatgaaagattatgtcgaaagcttggtttcaacttctt |
42298404 |
T |
|
| Q |
121 |
gaaagtaagtt |
131 |
Q |
| |
|
||||||||||| |
|
|
| T |
42298405 |
gaaagtaagtt |
42298415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0064 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0064
Description:
Target: scaffold0064; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 35 - 131
Target Start/End: Original strand, 24389 - 24485
Alignment:
| Q |
35 |
taatagagtactgaaatctagagttaacaaaaagatatgttggtactctatcaaggattatgtcgaaagcctggtctcaacctattgaaagtaagtt |
131 |
Q |
| |
|
|||||||||| ||||| |||| |||||||||||||||||||||| ||||| || ||||||| |||||| |||| |||| | |||| |||||||| |
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|
| T |
24389 |
taatagagtagtgaaaactagggttaacaaaaagatatgttggtgatctataaacaattatgttgaaagcatggttccaacttgttgagagtaagtt |
24485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0128 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0128
Description:
Target: scaffold0128; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 60 - 131
Target Start/End: Original strand, 4370 - 4441
Alignment:
| Q |
60 |
aacaaaaagatatgttggtactctatcaaggattatgtcgaaagcctggtctcaacctattgaaagtaagtt |
131 |
Q |
| |
|
|||||||||||| |||||| | | || || ||||||||||||||| |||| ||||| | ||||||||||||| |
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|
| T |
4370 |
aacaaaaagatacgttggttcccaatgaaagattatgtcgaaagcttggtttcaacttcttgaaagtaagtt |
4441 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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