View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10319_low_7 (Length: 547)
Name: NF10319_low_7
Description: NF10319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10319_low_7 |
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| [»] chr5 (7 HSPs) |
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| [»] scaffold0184 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 463; Significance: 0; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 5 - 547
Target Start/End: Complemental strand, 13659065 - 13658523
Alignment:
| Q |
5 |
aggagaagcaaagggcaaaattcacatcttatggggtagtagaccttatatactcaagcaaatcttgaaagctgttgtaggaggaaccaccaggactcac |
104 |
Q |
| |
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||||||| |||||| ||||||||||||||||||| |||||||||||||||| | || |||||||| ||| |||||||||||||||||||||||||||| |
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| T |
13659065 |
aggagaattaaagggaaaaattcacatcttatgggctagtagaccttatatattgaattaaatcttggaagttgttgtaggaggaaccaccaggactcac |
13658966 |
T |
|
| Q |
105 |
actcttggatgccaacttagccatatccattgctgatctaacaaactcctccttcctattcaccataacatcattcaccatattctccacaacctttcta |
204 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
13658965 |
actcttggatgccaacttagctatatccattgctgatctaacaaactcctccttcctattcaccataacatcattcaccatattctccacaaccttccta |
13658866 |
T |
|
| Q |
205 |
tcacaaacatccttcatatccaatccaagcttccaaacctcactcacaaatctactattaatttgttgatcagcaaaataaggccaacaaatcataggca |
304 |
Q |
| |
|
||||||||||| ||||||||||| ||||| |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
13658865 |
tcacaaacatctttcatatccaacccaagtttccaaacatcactcacaaacctactattaatttgttgatcagcaaaataaggccaacatatcataggca |
13658766 |
T |
|
| Q |
305 |
caccacaaaccacactctccaaagtagaattccatccactatgtgtcaaaaaggcaccaattgctttgtgtgataaaacttcctcttgtggaacccaccc |
404 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
13658765 |
caccacaaaccacactctccaaagtagaattccatccactatgtgtcaaaaaggcaccaattgctttgtgtgacaaaacttcctcttgtggaacccaccc |
13658666 |
T |
|
| Q |
405 |
cacaatcatccctttctctttagtagtcccttcctcaagctccttcaatagtcctttttcttgtaccatgtttggcctaatcacccacaaaaatgatttt |
504 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
13658665 |
cacaatcatccctttctctttagtagtcccttcctcaagctccttcaatagtcctttttcttgtaccatgtttggcctaatcacccacaaaaatggtttt |
13658566 |
T |
|
| Q |
505 |
ttgctattcaataaaccgtgccaaatctcaatgatttcttctc |
547 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
13658565 |
ttgctattcaataaaccgtgccaaatctcaatgatttcttctc |
13658523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 41 - 547
Target Start/End: Complemental strand, 13648501 - 13647995
Alignment:
| Q |
41 |
tagtagaccttatatactcaagcaaatcttgaaagctgttgtaggaggaaccaccaggactcacactcttggatgccaacttagccatatccattgctga |
140 |
Q |
| |
|
|||||||||||||||| | || |||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
13648501 |
tagtagaccttatatattgaattaaatcttggaagttgttgtaggaggaaccaccaggactcacactcttggatgccaacttagctatatccattgctga |
13648402 |
T |
|
| Q |
141 |
tctaacaaactcctccttcctattcaccataacatcattcaccatattctccacaacctttctatcacaaacatccttcatatccaatccaagcttccaa |
240 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||| |||||| |
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| T |
13648401 |
tctaacaaactcctccttcctattcaccataacatcattcaccatattctccacaaccttcctatcacaaacatctttcatatccaacccaagtttccaa |
13648302 |
T |
|
| Q |
241 |
acctcactcacaaatctactattaatttgttgatcagcaaaataaggccaacaaatcataggcacaccacaaaccacactctccaaagtagaattccatc |
340 |
Q |
| |
|
|| ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |||||||| | |
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| T |
13648301 |
acatcactcacaaacctactattaatttgttgatcagcaaaataaggccaacatatcataggcacaccacaaaccacactttccaaagttgaattccacc |
13648202 |
T |
|
| Q |
341 |
cactatgtgtcaaaaaggcaccaattgctttgtgtgataaaacttcctcttgtggaacccaccccacaatcatccctttctctttagtagtcccttcctc |
440 |
Q |
| |
|
|| ||||||||||||| ||||||||||| || ||||| ||||||||||||||||| |||||||| ||||||| ||||| || ||| |||||||||||| |
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|
| T |
13648201 |
cattatgtgtcaaaaaagcaccaattgccttatgtgacaaaacttcctcttgtgggacccacccaacaatcaaacctttttccttacgagtcccttcctc |
13648102 |
T |
|
| Q |
441 |
aagctccttcaatagtcctttttcttgtaccatgtttggcctaatcacccacaaaaatgattttttgctattcaataaaccgtgccaaatctcaatgatt |
540 |
Q |
| |
|
|||||| | |||| |||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| |||||||||||||| ||| |
|
|
| T |
13648101 |
aagctcacttaataatcctttttcttgtaccatgtttggcctaatcacccataaaaactgttttttgctattcaataaaccatgccaaatctcaattatt |
13648002 |
T |
|
| Q |
541 |
tcttctc |
547 |
Q |
| |
|
||||||| |
|
|
| T |
13648001 |
tcttctc |
13647995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 33 - 547
Target Start/End: Complemental strand, 13653564 - 13653050
Alignment:
| Q |
33 |
ttatggggtagtagaccttatatactcaagcaaatcttgaaagctgttgtaggaggaaccaccaggactcacactcttggatgccaacttagccatatcc |
132 |
Q |
| |
|
||||||| |||||||||||||||||| || ||||||||| | | ||||||||||||||||| ||||| | ||||||||||| ||||| | ||||| | |
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|
| T |
13653564 |
ttatgggctagtagaccttatatactgaatcaaatcttggaggttgttgtaggaggaaccatcaggatttacactcttggaagccaaatccgccatttta |
13653465 |
T |
|
| Q |
133 |
attgctgatctaacaaactcctccttcctattcaccataacatcattcaccatattctccacaacctttctatcacaaacatccttcatatccaatccaa |
232 |
Q |
| |
|
| || ||| | ||||||||||||| | |||||||||| |||||||||||||||||| ||||| || |||||||||||||| |||||||||||||||| |
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|
| T |
13653464 |
gtagcagattttgaaaactcctccttcttgttcaccataatatcattcaccatattctcaacaacattcctatcacaaacatctttcatatccaatccaa |
13653365 |
T |
|
| Q |
233 |
gcttccaaacctcactcacaaatctactattaatttgttgatcagcaaaataaggccaacaaatcataggcacaccacaaaccacactctccaaagtaga |
332 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
13653364 |
gcttccaaacctcactcacaaacctactattaagcggttgatcagaaaaataaggccaacaaatcataggcacaccacaaaccacactctccaaagtaga |
13653265 |
T |
|
| Q |
333 |
attccatccactatgtgtcaaaaaggcaccaattgctttgtgtgataaaacttcctcttgtggaacccaccccacaatcatccctttctctttagtagtc |
432 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| || ||||| |||||||||||||||||| ||||| ||||||||| |||||||| ||| ||||| |
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|
| T |
13653264 |
attccatccactatgtgtcaaaaaagcaccaattgccttatgtgacaaaacttcctcttgtggagcccactccacaatcaaacctttctccttactagtc |
13653165 |
T |
|
| Q |
433 |
ccttcctcaagctccttcaatagtcctttttcttgtaccatgtttggcctaatcacccacaaaaatgattttttgctattcaataaaccgtgccaaatct |
532 |
Q |
| |
|
||||||||||| || || | ||||| ||||||||||||||||||||| |||||||||||||| |||| ||||||||| ||||| ||||||||||||| || |
|
|
| T |
13653164 |
ccttcctcaagttcttttattagtcttttttcttgtaccatgtttggtctaatcacccacaagaatgcttttttgctgttcaacaaaccgtgccaaaact |
13653065 |
T |
|
| Q |
533 |
caatgatttcttctc |
547 |
Q |
| |
|
||| |||||||||| |
|
|
| T |
13653064 |
caagtatttcttctc |
13653050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 252 - 356
Target Start/End: Original strand, 26672098 - 26672202
Alignment:
| Q |
252 |
aaatctactattaatttgttgatcagcaaaataaggccaacaaatcataggcacaccacaaaccacactctccaaagtagaattccatccactatgtgtc |
351 |
Q |
| |
|
|||||||| |||| ||||||| ||||||||| |||||||||| ||||| || ||||||| | ||||| ||||| || |||||||| ||| |||||||| |
|
|
| T |
26672098 |
aaatctacaattagtttgttgttcagcaaaaaaaggccaacatatcattggaacaccaccacaaacactttccaacgttgaattccaaccattatgtgtc |
26672197 |
T |
|
| Q |
352 |
aaaaa |
356 |
Q |
| |
|
||||| |
|
|
| T |
26672198 |
aaaaa |
26672202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 252 - 356
Target Start/End: Original strand, 26901384 - 26901488
Alignment:
| Q |
252 |
aaatctactattaatttgttgatcagcaaaataaggccaacaaatcataggcacaccacaaaccacactctccaaagtagaattccatccactatgtgtc |
351 |
Q |
| |
|
|||||||| |||| ||||||| ||||||||| |||||||||| ||||| || ||||||| | ||||| || || || |||||||| |||||||||||| |
|
|
| T |
26901384 |
aaatctacaattagtttgttgttcagcaaaaaaaggccaacatatcattggaacaccaccacaaacactttctaacgttgaattccaaccactatgtgtc |
26901483 |
T |
|
| Q |
352 |
aaaaa |
356 |
Q |
| |
|
||||| |
|
|
| T |
26901484 |
aaaaa |
26901488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 252 - 356
Target Start/End: Original strand, 26943696 - 26943800
Alignment:
| Q |
252 |
aaatctactattaatttgttgatcagcaaaataaggccaacaaatcataggcacaccacaaaccacactctccaaagtagaattccatccactatgtgtc |
351 |
Q |
| |
|
|||||||| |||| ||||||| ||||||||| |||||||||| ||||| || ||||||| | ||||| ||||| || |||||||| ||| |||||||| |
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|
| T |
26943696 |
aaatctacaattagtttgttgttcagcaaaaaaaggccaacatatcattggaacaccaccacaaacactttccaacgttgaattccaaccattatgtgtc |
26943795 |
T |
|
| Q |
352 |
aaaaa |
356 |
Q |
| |
|
||||| |
|
|
| T |
26943796 |
aaaaa |
26943800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 331 - 377
Target Start/End: Original strand, 20156862 - 20156908
Alignment:
| Q |
331 |
gaattccatccactatgtgtcaaaaaggcaccaattgctttgtgtga |
377 |
Q |
| |
|
||||||||||||| |||||||||||| ||||| |||||||| ||||| |
|
|
| T |
20156862 |
gaattccatccacaatgtgtcaaaaatgcacctattgctttatgtga |
20156908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0184 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0184
Description:
Target: scaffold0184; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 261 - 367
Target Start/End: Original strand, 11580 - 11686
Alignment:
| Q |
261 |
attaatttgttgatcagcaaaataaggccaacaaatcataggcacaccacaaaccacactctccaaagtagaattccatccactatgtgtcaaaaaggca |
360 |
Q |
| |
|
|||||||| ||| |||||||| |||||||| ||||||||||||||| | || |||||||| | | |||||||| |||| ||| |||||||| ||| |
|
|
| T |
11580 |
attaattttttgctcagcaaacaaaggccaagcaatcataggcacacccaacactacactctcaagaactgaattccaaccacaatgagtcaaaaatgca |
11679 |
T |
|
| Q |
361 |
ccaattg |
367 |
Q |
| |
|
||||||| |
|
|
| T |
11680 |
ccaattg |
11686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 318 - 375
Target Start/End: Original strand, 560446 - 560503
Alignment:
| Q |
318 |
actctccaaagtagaattccatccactatgtgtcaaaaaggcaccaattgctttgtgt |
375 |
Q |
| |
|
|||||||||| | |||||||| |||| ||| || ||||| |||||||||||||||||| |
|
|
| T |
560446 |
actctccaaaattgaattccaaccacaatgagttaaaaatgcaccaattgctttgtgt |
560503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 294 - 367
Target Start/End: Original strand, 894461 - 894534
Alignment:
| Q |
294 |
aatcataggcacaccacaaaccacactctccaaagtagaattccatccactatgtgtcaaaaaggcaccaattg |
367 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||| ||| ||| |||| ||| ||||||| ||||||||| |
|
|
| T |
894461 |
aatcataggcacaccattaaccacactctccaaagttgaaccccaaccacaatgactcaaaaaaccaccaattg |
894534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 331 - 387
Target Start/End: Complemental strand, 36742492 - 36742436
Alignment:
| Q |
331 |
gaattccatccactatgtgtcaaaaaggcaccaattgctttgtgtgataaaacttcc |
387 |
Q |
| |
|
|||||||||||||||||||| | |||| |||||| ||||||| ||||| ||||||| |
|
|
| T |
36742492 |
gaattccatccactatgtgttagaaagcaaccaatagctttgtttgatagaacttcc |
36742436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 322 - 379
Target Start/End: Complemental strand, 41545717 - 41545660
Alignment:
| Q |
322 |
tccaaagtagaattccatccactatgtgtcaaaaaggcaccaattgctttgtgtgata |
379 |
Q |
| |
|
||||| || ||||||||||||| |||||||||||| ||| |||||||||||||||| |
|
|
| T |
41545717 |
tccaatgttgaattccatccacaatgtgtcaaaaaaatacctattgctttgtgtgata |
41545660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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