View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10319_low_8 (Length: 539)
Name: NF10319_low_8
Description: NF10319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10319_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 351; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 1 - 414
Target Start/End: Complemental strand, 1357241 - 1356842
Alignment:
| Q |
1 |
ccccttcttttgtacttctctgcaactttagtattttaatcaaattatcttgtaatgcttcattgcaatcaataaatgatacaaaatattcaattcttaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1357241 |
ccccttcttttgtacttctctgcaactttagtattttaatcaaattatcttgtaatgcttcattgcaatcaataaatgatacaaaatattcaattcttaa |
1357142 |
T |
|
| Q |
101 |
tcatttagctgagaaattgttactcttaaagggtcaaacccttacagattcctttgaaacgaaagcagatatttcatcctttctcatcataatcactgaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||| |
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| T |
1357141 |
tcatttagctgagaaattgttactcttaaagggtcaaacccttacagattcctttgaaacaaaagcagatatttcatcccttctcatcataatcactgaa |
1357042 |
T |
|
| Q |
201 |
ttcacaaaagtgaactgaaaacaaggaacagtaaatatgtggatactgactttgcaaatattcttctcttttttgctgcaaccctaatgtaggctttgtt |
300 |
Q |
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| T |
1357041 |
ttcacaaaagtgaactga--------------aaatatgtggatactgactttgcaaatattcttctcttttttgctgcaaccctaatgtaggctttgtt |
1356956 |
T |
|
| Q |
301 |
ttttggtagtgccctaatcaatggaggctttcattttttatatatagtatcaaatatgtttgattttcaaagaaataagattcaatttatttttaaaaca |
400 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1356955 |
ttttggtagtgccctaatcaatggaggctttcattttatatatatagtatcaaatatgtttgattttcaaagaaataagattcaatttatttttaaaaca |
1356856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 165 - 297
Target Start/End: Complemental strand, 1352279 - 1352142
Alignment:
| Q |
165 |
gcagatatttcatcctttctcatcataatcactgaattcacaaaagtgaactgaaaacaaggaacagtaaatat-----gtggatactgactttgcaaat |
259 |
Q |
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| T |
1352279 |
gcagatatttcatctcttctcatcataataactgaattcacaaaagtgaactgaaaacaaggaacagtaaatattagtagtagatactgactttacaaat |
1352180 |
T |
|
| Q |
260 |
attcttctcttttttgctgcaaccctaatgtaggcttt |
297 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||||| |
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| T |
1352179 |
attcttctcttttttgctgcaaccctaatggaggcttt |
1352142 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 479 - 527
Target Start/End: Complemental strand, 1356764 - 1356716
Alignment:
| Q |
479 |
tatcttctaggtgtaacaaaaaagattgtaattatcgtccgtgatgtcc |
527 |
Q |
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| T |
1356764 |
tatcttctaggtgtatcaaaaaagattgtaattatcgtccgtcatgtcc |
1356716 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 479 - 516
Target Start/End: Complemental strand, 1351960 - 1351923
Alignment:
| Q |
479 |
tatcttctaggtgtaacaaaaaagattgtaattatcgt |
516 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||| |
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|
| T |
1351960 |
tatcttccaggtgtaacaaaaaagattgtaattatcgt |
1351923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 320 - 367
Target Start/End: Complemental strand, 1352153 - 1352108
Alignment:
| Q |
320 |
aatggaggctttcattttttatatatagtatcaaatatgtttgatttt |
367 |
Q |
| |
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|||||||||||||||| | ||||||| |||||||||||||||||||| |
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|
| T |
1352153 |
aatggaggctttcattct--atatatactatcaaatatgtttgatttt |
1352108 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 78; Significance: 4e-36; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 165 - 296
Target Start/End: Complemental strand, 36717324 - 36717187
Alignment:
| Q |
165 |
gcagatatttcatcctttctcatcataatcactga----attcacaaaagtgaactgaaaacaaggaacagtaaatat--gtggatactgactttgcaaa |
258 |
Q |
| |
|
||||||||||||||| ||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||| || ||||||||||||||||| |
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| T |
36717324 |
gcagatatttcatcccttctcatcataataactgactgaattcacaaaagtgaactgaaaacaaggaacagcgaatattagtagatactgactttgcaaa |
36717225 |
T |
|
| Q |
259 |
tattcttctcttttttgctgcaaccctaatgtaggctt |
296 |
Q |
| |
|
||||||||||||||||| ||||||||||| | |||||| |
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|
| T |
36717224 |
tattcttctcttttttggtgcaaccctaacggaggctt |
36717187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 348 - 403
Target Start/End: Complemental strand, 36717164 - 36717109
Alignment:
| Q |
348 |
tatcaaatatgtttgattttcaaagaaataagattcaatttatttttaaaacaaat |
403 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
36717164 |
tatcaaatatgtttgattttcaaagaaataagattcgatttatttttaaaacaaat |
36717109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 344 - 403
Target Start/End: Complemental strand, 48104353 - 48104294
Alignment:
| Q |
344 |
atagtatcaaatatgtttgattttcaaagaaataagattcaatttatttttaaaacaaat |
403 |
Q |
| |
|
||||||| || ||||||||||||||||||||||||| ||| |||||||||||||||||| |
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|
| T |
48104353 |
atagtataaattatgtttgattttcaaagaaataagtttcggtttatttttaaaacaaat |
48104294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 37 - 84
Target Start/End: Complemental strand, 28034725 - 28034679
Alignment:
| Q |
37 |
taatcaaattatcttgtaatgcttcattgcaatcaataaatgatacaa |
84 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
28034725 |
taatcaaattatcttgtaatgctt-attgcaatcaataaatgatacaa |
28034679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 39 - 79
Target Start/End: Complemental strand, 44146681 - 44146641
Alignment:
| Q |
39 |
atcaaattatcttgtaatgcttcattgcaatcaataaatga |
79 |
Q |
| |
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||||| ||||||||||||| |||| |||||||||||||||| |
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| T |
44146681 |
atcaacttatcttgtaatgtttcaatgcaatcaataaatga |
44146641 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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