View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10319_low_9 (Length: 534)
Name: NF10319_low_9
Description: NF10319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10319_low_9 |
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| [»] scaffold0008 (1 HSPs) |
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| [»] scaffold0368 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 287; Significance: 1e-161; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 173 - 516
Target Start/End: Original strand, 38296918 - 38297268
Alignment:
| Q |
173 |
gcattatcttttaagacagttttagattccaactccattcgtaaaaaagacaagacgggatataagtcctatccagcatccacctccaagacaacatctt |
272 |
Q |
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| T |
38296918 |
gcattatctttcaagacagttttggattccaactccattcgtaaaaaagacaagacggggtatgagtcctatccagcatccacctccaagacaacacctt |
38297017 |
T |
|
| Q |
273 |
tatctcttcaaccattcatccacgtcaaaattaatctccttaaaaatcttatcatttctcttcttccacatcacccaaatggtagtatgccaaattaacc |
372 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38297018 |
tatctcttcaaccattcatccacgtcaaaattaatccccttaaaaatcttatcatttctcttcttccacatcacccaaatggtagtatgccaaattaacc |
38297117 |
T |
|
| Q |
373 |
aaaaacctttggtaacctttttaggtctccca--------ccaacactcccgaacaaagaagtatgcacaccttgattttatggagagtgaacccaacca |
464 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
38297118 |
aaaaacctttggtaacctttttaggtctcccaccaacactccaacactcccgaacaaagaagtatgcacaccttgattttgtggagagtgaacccaacca |
38297217 |
T |
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| Q |
465 |
ccgtgatctcctcaaaagccacatgtcatgcattacatgtacctgttgacca |
516 |
Q |
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| T |
38297218 |
ccgtgatctcctc-aaagccacatgtcatgcattacatgtacctgttgacca |
38297268 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 11 - 81
Target Start/End: Original strand, 38296756 - 38296826
Alignment:
| Q |
11 |
cacagagaagtctgtcnnnnnnnggcagcactacaagtagttaaaagccatgacaacaacacaccctattg |
81 |
Q |
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| T |
38296756 |
cacagagaagtctgtcaaaaaaaggcagcactacaagtagttaaaagccatgacagcaacacaccctattg |
38296826 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 427 - 516
Target Start/End: Original strand, 38296287 - 38296376
Alignment:
| Q |
427 |
tatgcacaccttgatttta-tggagagtgaacccaaccaccgtgatctcctcaaaagccacatgtcatgcattacatgtacctgttgacca |
516 |
Q |
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| T |
38296287 |
tatgcacaccttgatttttgtggtgagtgaacctaaccaccgtggtctcctcgaa-gccacaggttatgcattacacgtacctgttgacca |
38296376 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 302 - 382
Target Start/End: Complemental strand, 38553167 - 38553087
Alignment:
| Q |
302 |
attaatctccttaaaaatcttatcatttctcttcttccacatcacccaaatggtagtatgccaaattaaccaaaaaccttt |
382 |
Q |
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||||||| |||| |||||||||||||| || ||||||| ||||||||| ||||| |||||||| ||||| |||||||| |
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| T |
38553167 |
attaatccccttgaaaatcttatcattcctagctttccacaacacccaaatcgtagtgtgccaaatcaaccacaaaccttt |
38553087 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 197 - 284
Target Start/End: Complemental strand, 19359222 - 19359135
Alignment:
| Q |
197 |
gattccaactccattcgtaaaaaagacaagacgggatataagtcctatccagcatccacctccaagacaacatctttatctcttcaac |
284 |
Q |
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| T |
19359222 |
gattccaacaccattggtagaaaaggcacgatggggtaaaagtcctctccaacatccacctccacaacaacaccttaatctcttcaac |
19359135 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 197 - 284
Target Start/End: Original strand, 19450351 - 19450438
Alignment:
| Q |
197 |
gattccaactccattcgtaaaaaagacaagacgggatataagtcctatccagcatccacctccaagacaacatctttatctcttcaac |
284 |
Q |
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||||| ||| ||||||||| ||||| || || | | || ||||||| |||| |||||||||||| ||||||| ||| ||||||||||| |
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| T |
19450351 |
gattctaacaccattcgtagaaaaggcacgatgaggtaaaagtcctctccaacatccacctccacgacaacaccttaatctcttcaac |
19450438 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 197 - 284
Target Start/End: Complemental strand, 19530725 - 19530638
Alignment:
| Q |
197 |
gattccaactccattcgtaaaaaagacaagacgggatataagtcctatccagcatccacctccaagacaacatctttatctcttcaac |
284 |
Q |
| |
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||||| ||| ||||||||| ||||| || || | | || ||||||| |||| |||||||||||| ||||||| ||| ||||||||||| |
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| T |
19530725 |
gattctaacaccattcgtagaaaaggcacgatgaggtaaaagtcctctccaacatccacctccacgacaacaccttaatctcttcaac |
19530638 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 127; Significance: 2e-65; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 197 - 414
Target Start/End: Complemental strand, 24018451 - 24018233
Alignment:
| Q |
197 |
gattccaactccattcgtaaaaaagacaagacgggatataagtcctatccagcatccacctccaagacaacatctttatctcttcaacca-ttcatccac |
295 |
Q |
| |
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||||||||| |||||||||||||||||| ||||||| || ||| ||||||| |||||||||||||||| ||| ||||||||| ||||||| ||||||||| |
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| T |
24018451 |
gattccaacaccattcgtaaaaaagacaggacgggaaatgagttctatccaacatccacctccaagacgacacctttatctcctcaaccaattcatccac |
24018352 |
T |
|
| Q |
296 |
gtcaaaattaatctccttaaaaatcttatcatttctcttcttccacatcacccaaatggtagtatgccaaattaaccaaaaacctttggtaaccttttta |
395 |
Q |
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|||||||||||| ||||||||||||| | |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| | ||||||||| |
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| T |
24018351 |
atcaaaattaatccccttaaaaatcttgccgtttctcttcttccacatcacccaaatggtagtgtgccatattaaccaaaaacctttgatgaccttttta |
24018252 |
T |
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| Q |
396 |
ggtctcccaccaacactcc |
414 |
Q |
| |
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| |||||| ||||| |||| |
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| T |
24018251 |
gctctccccccaacgctcc |
24018233 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 244 - 396
Target Start/End: Original strand, 31034966 - 31035119
Alignment:
| Q |
244 |
tccagcatccacctccaagacaacatctttatctcttcaacca-ttcatccacgtcaaaattaatctccttaaaaatcttatcatttctcttcttccaca |
342 |
Q |
| |
|
|||| |||| ||||||||||||||| ||| |||||| |||||| ||| ||||| ||||| || || |||| |||||| | ||||||||| | ||||||| |
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| T |
31034966 |
tccaacatctacctccaagacaacaccttaatctctacaaccaattcctccacctcaaagtttattcccttgaaaatcatgtcatttctcgttttccaca |
31035065 |
T |
|
| Q |
343 |
tcacccaaatggtagtatgccaaattaaccaaaaacctttggtaacctttttag |
396 |
Q |
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|||||||| || || ||| ||||||||||||||||||| || |||||||||| |
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| T |
31035066 |
aaacccaaatagttgtgtgctaaattaaccaaaaacctttagttacctttttag |
31035119 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0008 (Bit Score: 87; Significance: 2e-41; HSPs: 1)
Name: scaffold0008
Description:
Target: scaffold0008; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 197 - 414
Target Start/End: Complemental strand, 59715 - 59497
Alignment:
| Q |
197 |
gattccaactccattcgtaaaaaagacaagacgggatataagtcctatccagcatccacctccaagacaacatctttatctcttcaacca-ttcatccac |
295 |
Q |
| |
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||||||||| ||||||| |||||||||||| ||| | | ||||| |||| |||||||||||||||||||| ||| || ||||| |||| ||||||||| |
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| T |
59715 |
gattccaacaccattcgctaaaaagacaagatggggtgtgagtccattccaacatccacctccaagacaacaccttaatttcttcgaccaattcatccac |
59616 |
T |
|
| Q |
296 |
gtcaaaattaatctccttaaaaatcttatcatttctcttcttccacatcacccaaatggtagtatgccaaattaaccaaaaacctttggtaaccttttta |
395 |
Q |
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| |||||| ||| ||||||||||||| ||||||||||| |||||||| ||||||||||| || ||| ||||||||||| |||||| || ||||||||| |
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| T |
59615 |
cttaaaatttatccccttaaaaatcttgtcatttctctttttccacataacccaaatggttgtgtgctgaattaaccaaagacctttagttaccttttta |
59516 |
T |
|
| Q |
396 |
ggtctcccaccaacactcc |
414 |
Q |
| |
|
||||||||| ||||||| |
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| T |
59515 |
actctcccacctacactcc |
59497 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 244 - 396
Target Start/End: Complemental strand, 47476593 - 47476440
Alignment:
| Q |
244 |
tccagcatccacctccaagacaacatctttatctcttcaacca-ttcatccacgtcaaaattaatctccttaaaaatcttatcatttctcttcttccaca |
342 |
Q |
| |
|
|||| |||||| |||||||| |||| || || || ||||||| ||| ||||| |||||||| || |||| || ||||||||||||||| | ||||||| |
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| T |
47476593 |
tccaacatccatctccaagataacactttgatttcctcaaccaattcctccacctcaaaattcctccccttgaagatcttatcatttctcctattccaca |
47476494 |
T |
|
| Q |
343 |
tcacccaaatggtagtatgccaaattaaccaaaaacctttggtaacctttttag |
396 |
Q |
| |
|
|||||||| || || ||||||||||||||||| ||||||||||| ||||||| |
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|
| T |
47476493 |
aaacccaaatcgttgtgtgccaaattaaccaaaatcctttggtaacttttttag |
47476440 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0368 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0368
Description:
Target: scaffold0368; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 427 - 516
Target Start/End: Original strand, 1650 - 1739
Alignment:
| Q |
427 |
tatgcacaccttgatttta-tggagagtgaacccaaccaccgtgatctcctcaaaagccacatgtcatgcattacatgtacctgttgacca |
516 |
Q |
| |
|
|||||||||||||||||| ||| ||||||||| |||||||||| ||||||| || |||||| || |||||||||| |||||||||||||| |
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| T |
1650 |
tatgcacaccttgatttttgtggtgagtgaacctaaccaccgtggtctcctcgaa-gccacaggttatgcattacacgtacctgttgacca |
1739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 197 - 406
Target Start/End: Complemental strand, 34760199 - 34759989
Alignment:
| Q |
197 |
gattccaactccattcgtaaaaaagacaagacgggatataagtcctatccagcatccacctccaagacaacatctttatctcttcaaccat-tcatccac |
295 |
Q |
| |
|
|||||||||||||||| || || | |||||||| || || ||| |||| || ||| ||||||||| ||| ||| |||||||||| || || ||||| |
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|
| T |
34760199 |
gattccaactccattcatagaagaagcaagacggagtactagacctttccaacaaccatctccaagaccacaccttaatctcttcaatcacatcctccac |
34760100 |
T |
|
| Q |
296 |
gtcaaaattaatctccttaaaaatcttatcatttctcttcttccacatcacccaaatggtagtatgccaaattaaccaaaaacctttggtaaccttttta |
395 |
Q |
| |
|
|| |||||||| |||| |||||| ||||| ||||| |||||| |||||||| ||||||||||||| |||||||| ||||| |||||||| ||| |
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| T |
34760099 |
cacacaattaatccccttgaaaatcaagtcattcctcttggtccacaaaacccaaatagtagtatgccaaaccaaccaaaagcctttagtaaccttatta |
34760000 |
T |
|
| Q |
396 |
ggtctcccacc |
406 |
Q |
| |
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| ||||||||| |
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|
| T |
34759999 |
gctctcccacc |
34759989 |
T |
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