View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1031_high_1 (Length: 407)
Name: NF1031_high_1
Description: NF1031
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1031_high_1 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 358; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 30 - 407
Target Start/End: Complemental strand, 10545513 - 10545136
Alignment:
| Q |
30 |
aaaacttctttgttgcatccatcaagaacggtgacggaccaagcaggaacaatgtatttaccatcattttgcaagtcaacatttccatcagtgttatctt |
129 |
Q |
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| T |
10545513 |
aaaacttctttgttgcatccatcaagaatggtgacggaccaagcaggaacaaagtatttaccatcattttgcaagtcaacatttccatcagtgttatctt |
10545414 |
T |
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| Q |
130 |
tatcattgctcaagaaacaaaatcttgctccaacagaattagtgtatgttgttagtgtgattccattaccaagatccttgtcattccttgaagtataatt |
229 |
Q |
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| T |
10545413 |
tatcattgctcaagaaacaaaatcttgctccaacagaattagtgtatgttgttagtgtgattccattaccaagatccttgtcattccttgaagtataatt |
10545314 |
T |
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| Q |
230 |
cgtaagaaccttttcacctaatttaattgcttcatgaaggaacttaagatgcccgtatttcggttgattcaaattcccatactcgttgatcggtgcatca |
329 |
Q |
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|||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10545313 |
cgtaagtaccttttcgcctaatttaattgcttcatgaaggaacttaagatgcccgtatttcggttgattcaaattcccatactcgttgatcggtgcatca |
10545214 |
T |
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| Q |
330 |
tagtcataagatgtaataatatatggtccaccagatgtgcgaccaaaattggttcctccatggtacatgtagtaattg |
407 |
Q |
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| T |
10545213 |
tagtcataagatgttataatatatggtccaccagatgtgcgaccaaaattggttcctccatggtacatgtagtaattg |
10545136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 134 - 407
Target Start/End: Complemental strand, 9643463 - 9643190
Alignment:
| Q |
134 |
attgctcaagaaacaaaatcttgctccaacagaattagtgtatgttgttagtgtgattccattaccaagatccttgtcattccttgaagtataattcgta |
233 |
Q |
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| T |
9643463 |
attgctcaagaaacaaaatcttgctccactggaattagtgtatgttgttagtgtgagtccattgccgagatcctcgtctttccttgcactataatttgta |
9643364 |
T |
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| Q |
234 |
agaaccttttcacctaatttaattgcttcatgaaggaacttaagatgcccgtatttcggttgattcaaattcccatactcgttgatcggtgcatcatagt |
333 |
Q |
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| T |
9643363 |
agtacattttcacctaatttgattgctgcatgaagattcttcagatgtccccatttaggttgattcaaattcccatactcatcaattggtgcatcatagt |
9643264 |
T |
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| Q |
334 |
cataagatgtaataatatatggtccaccagatgtgcgaccaaaattggttcctccatggtacatgtagtaattg |
407 |
Q |
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| T |
9643263 |
catatgatgttgttatatacggcccacctgcggtgcgaccaaagtttgttcctccatggtacatgtagtaattg |
9643190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 321 - 406
Target Start/End: Complemental strand, 279059 - 278974
Alignment:
| Q |
321 |
ggtgcatcatagtcataagatgtaataatatatggtccaccagatgtgcgaccaaaattggttcctccatggtacatgtagtaatt |
406 |
Q |
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||||||||||||||||| | |||||| ||| | || ||||| | || || |||||||| ||||||||||| |||| ||||||||| |
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| T |
279059 |
ggtgcatcatagtcatatgttgtaatgataaacgggccacccgcggttcgtccaaaatttgttcctccatgatacaagtagtaatt |
278974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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