View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1031_high_2 (Length: 309)
Name: NF1031_high_2
Description: NF1031
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1031_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 285; Significance: 1e-160; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 12 - 300
Target Start/End: Complemental strand, 10545083 - 10544795
Alignment:
| Q |
12 |
cagcagttctatgtggagctctttcaccccatttttgaaaccaaccaatccaattttcagtgaacatttttggactttttgggttattaggtttaaaatt |
111 |
Q |
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| T |
10545083 |
cagcagttctatgtggagctctttcaccccatttttgaaaccatccaatccaattttcagtgaacatttttggactttttgggttattaggtttaaaatt |
10544984 |
T |
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| Q |
112 |
gtgacaataatacccattgcaagtattgatgataggttgaggagcatcattttgttgacacatgaaccatggaacaccgatattttgtgctaaagccatt |
211 |
Q |
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| T |
10544983 |
gtgacaataatacccattgcaagtattgatgataggttgaggagcatcattttgttgacacatgaaccatggaacaccgatattttgtgctaaagccatt |
10544884 |
T |
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| Q |
212 |
tgagcagcccatttaatatatgctttccctggttctttgaaattccacatgatatctccatattcattctcaatttgagctagaataat |
300 |
Q |
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| T |
10544883 |
tgagcagcccatttaatatatgctttccctggttctttgaaattccacatgatatctccatattcattctcaatttgagctagaataat |
10544795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 12 - 300
Target Start/End: Complemental strand, 9643137 - 9642849
Alignment:
| Q |
12 |
cagcagttctatgtggagctctttcaccccatttttgaaaccaaccaatccaattttcagtgaacatttttggactttttgggttattaggtttaaaatt |
111 |
Q |
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||||| ||||||||||| | ||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||| || ||||||| |||||| |
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| T |
9643137 |
cagcacttctatgtggaaccctttcaccccatttttggaaccaaccaatccaattttcagtgaaaattttaggactttttggattgttaggttgaaaatt |
9643038 |
T |
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| Q |
112 |
gtgacaataatacccattgcaagtattgatgataggttgaggagcatcattttgttgacacatgaaccatggaacaccgatattttgtgctaaagccatt |
211 |
Q |
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| T |
9643037 |
gtgacaataatatccattgcaagtattgatgataggttgaggagcatcttgttgttgacacatgatccatggaacaccaatgttttgtgctagagccatc |
9642938 |
T |
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| Q |
212 |
tgagcagcccatttaatatatgctttccctggttctttgaaattccacatgatatctccatattcattctcaatttgagctagaataat |
300 |
Q |
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||||||||||||| || |||||| ||||| | |||||| ||||||||||||| || |||||||||||||||||||||||||||||||| |
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| T |
9642937 |
tgagcagcccattgaacatatgccttcccagcatctttgtaattccacatgatgtccccatattcattctcaatttgagctagaataat |
9642849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 32 - 300
Target Start/End: Complemental strand, 278900 - 278632
Alignment:
| Q |
32 |
ctttcaccccatttttgaaaccaaccaatccaattttcagtgaacatttttggactttttgggttattaggtttaaaattgtgacaataatacccattgc |
131 |
Q |
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||||||||||||||||| ||||| |||| |||||| || || || ||||| || ||||| || || || || || ||| ||| ||||||||| ||||||| |
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| T |
278900 |
ctttcaccccatttttggaaccagccaacccaattctctgtaaatattttagggcttttaggattgtttggcttgaaagtgtcacaataatagccattgc |
278801 |
T |
|
| Q |
132 |
aagtattgatgataggttgaggagcatcattttgttgacacatgaaccatggaacaccgatattttgtgctaaagccatttgagcagcccatttaatata |
231 |
Q |
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| T |
278800 |
atgtatcgataatagtggctggagcatttttttgcttgcacatgatccatgggacaccaatattttgagctaaagccatttcggcacaccatttaatgta |
278701 |
T |
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| Q |
232 |
tgctttccctggttctttgaaattccacatgatatctccatattcattctcaatttgagctagaataat |
300 |
Q |
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|| ||||| | |||| ||| | |||| ||||||||||||||||||||||||||| | |||||| |
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| T |
278700 |
tgaattcccagcttctccataatgacttatgacatctccatattcattctcaatttgagccaaaataat |
278632 |
T |
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