View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1031_low_1 (Length: 607)

Name: NF1031_low_1
Description: NF1031
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1031_low_1
NF1031_low_1
[»] chr5 (4 HSPs)
chr5 (86-607)||(38816155-38816676)
chr5 (299-448)||(38821782-38821928)
chr5 (519-557)||(35665559-35665597)
chr5 (578-607)||(24906250-24906279)
[»] chr6 (1 HSPs)
chr6 (578-607)||(34073276-34073305)
[»] chr3 (1 HSPs)
chr3 (578-607)||(5440965-5440994)
[»] chr7 (1 HSPs)
chr7 (579-607)||(17852092-17852120)


Alignment Details
Target: chr5 (Bit Score: 514; Significance: 0; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 514; E-Value: 0
Query Start/End: Original strand, 86 - 607
Target Start/End: Original strand, 38816155 - 38816676
Alignment:
Q  86 atcacatgcacaattatcataactcagtgaaagaaaatgcaagaaaaggtatattgtatcctttgaacctcaatttctcacctacccaaagaaacctcat 185  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38816155 atcacatgcacaattatcataactcagtgaaagaaaatgcaagaaaaggtatattgtatcctttgaacctcaatttctcacctacccaaagaaacctcat 38816254  T
Q  186 acaactatatacccttctctaacagacaaagtcagtttaatttacataaggccgtgatgtataccaactgtaaccacaaaaagtagccaactgcaaaatc 285  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38816255 acaactatatacccttctctaacagacaaagtcagtttaatttacataaggccgtgatgtataccaactgtaaccacaaaaagtagccaactgcaaaatc 38816354  T
Q  286 tagacaaaatgtaaaaccctaagaacaaggtttaattaaacctaaacaacagcataccatttgtccctttctcacccacccaagcattcctccttcatct 385  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38816355 tagacaaaatgtaaaaccctaagaacaaggtttaattaaacctaaacaacagcataccatttgtccctttctcacccacccaagcattcctccttcatct 38816454  T
Q  386 ttagaagggcaaattgaatgttccacagcaagatcactcaaatcttcacctgaacacacaacaagaaagccttagaaagaaacttcacaaataaatatct 485  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38816455 ttagaagggcaaattgaatgttccacagcaagatcactcaaatcttcacctgaacacacaacaagaaagccttagaaagaaacttcacaaataaatatct 38816554  T
Q  486 cccataaatatctagcaccgagacttcatattaaaggtgtgtccagtgtccaacagatgtcagtctccaacactatcacgattcacgaatataactatga 585  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38816555 cccataaatatctagcaccgagacttcatattaaaggtgtgtgcagtgtccaacagatgtcagtctccaacactatcacgattcacgaatataactatga 38816654  T
Q  586 agcacggacactcctcgaatta 607  Q
    | ||||||||||||||||||||    
T  38816655 atcacggacactcctcgaatta 38816676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 299 - 448
Target Start/End: Original strand, 38821782 - 38821928
Alignment:
Q  299 aaaccctaagaacaaggtttaattaaacctaaacaacagcataccatttgtccctttctcacccacccaagcattcctccttcatctttagaagggcaaa 398  Q
    |||||||||||||||| |||||  ||| ||||||| ||   ||||||||||||||||||||||||||||||| |||||||||| |||||||| ||||| |    
T  38821782 aaaccctaagaacaagatttaagcaaatctaaacatca---taccatttgtccctttctcacccacccaagccttcctccttcttctttagatgggcaca 38821878  T
Q  399 ttgaatgttccacagcaagatcactcaaatcttcacctgaacacacaaca 448  Q
      ||||  |||||||||||||| |||||||||||||||| ||||||||||    
T  38821879 ccgaatagtccacagcaagatcgctcaaatcttcacctggacacacaaca 38821928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 519 - 557
Target Start/End: Original strand, 35665559 - 35665597
Alignment:
Q  519 aaggtgtgtccagtgtccaacagatgtcagtctccaaca 557  Q
    |||||||||||||||||||||| |||||||| |||||||    
T  35665559 aaggtgtgtccagtgtccaacacatgtcagtttccaaca 35665597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 578 - 607
Target Start/End: Original strand, 24906250 - 24906279
Alignment:
Q  578 aactatgaagcacggacactcctcgaatta 607  Q
    ||||||||||||||||||||||||||||||    
T  24906250 aactatgaagcacggacactcctcgaatta 24906279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 578 - 607
Target Start/End: Original strand, 34073276 - 34073305
Alignment:
Q  578 aactatgaagcacggacactcctcgaatta 607  Q
    ||||||||||||||||||||||||||||||    
T  34073276 aactatgaagcacggacactcctcgaatta 34073305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 578 - 607
Target Start/End: Original strand, 5440965 - 5440994
Alignment:
Q  578 aactatgaagcacggacactcctcgaatta 607  Q
    ||||||||||||||||||||||||||||||    
T  5440965 aactatgaagcacggacactcctcgaatta 5440994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 579 - 607
Target Start/End: Complemental strand, 17852120 - 17852092
Alignment:
Q  579 actatgaagcacggacactcctcgaatta 607  Q
    |||||||||||||||||||||||||||||    
T  17852120 actatgaagcacggacactcctcgaatta 17852092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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